Wall clock time and date at job start Tue Mar 31 2020 06:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 110.64134 * 2 1 4 4 C 1.54335 * 110.84904 * 236.83681 * 2 1 3 5 5 N 1.47028 * 107.26121 * 219.67199 * 4 2 1 6 6 C 1.34777 * 125.64479 * 178.84760 * 5 4 2 7 7 O 1.21587 * 120.00071 * 359.72168 * 6 5 4 8 8 N 1.34780 * 119.99718 * 179.97438 * 6 5 4 9 9 C 1.39955 * 119.99570 * 174.53889 * 8 6 5 10 10 C 1.39291 * 119.94438 * 146.38488 * 9 8 6 11 11 C 1.38490 * 120.43242 * 179.97438 * 10 9 8 12 12 C 1.37682 * 120.31677 * 359.97438 * 11 10 9 13 13 C 1.40736 * 119.88492 * 0.02562 * 12 11 10 14 14 C 1.41412 * 120.21028 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00149 * 151.79874 * 14 13 12 16 16 C 1.39927 * 119.99926 * 331.79389 * 14 13 12 17 17 N 1.30835 * 120.00133 * 348.99323 * 16 14 13 18 18 Si 1.86798 * 120.00078 * 168.99007 * 16 14 13 19 19 H 1.48497 * 109.47259 * 90.00237 * 18 16 14 20 20 H 1.48497 * 109.47254 * 210.00252 * 18 16 14 21 21 H 1.48500 * 109.47279 * 330.00307 * 18 16 14 22 22 C 1.38234 * 119.94952 * 326.10724 * 9 8 6 23 23 C 1.47418 * 108.70460 * 358.58638 * 5 4 2 24 24 C 1.54911 * 104.83130 * 24.35516 * 23 5 4 25 25 H 1.09004 * 111.00219 * 81.06682 * 24 23 5 26 26 O 1.42900 * 111.00446 * 204.91531 * 24 23 5 27 27 H 1.08993 * 109.47167 * 296.85625 * 1 2 3 28 28 H 1.09000 * 109.47195 * 56.86198 * 1 2 3 29 29 H 1.09003 * 109.47044 * 176.85550 * 1 2 3 30 30 H 1.08993 * 109.99460 * 100.20201 * 4 2 1 31 31 H 1.09005 * 109.77878 * 339.02435 * 4 2 1 32 32 H 0.96992 * 119.99747 * 354.54057 * 8 6 5 33 33 H 1.08003 * 119.78521 * 359.95117 * 10 9 8 34 34 H 1.07995 * 119.84262 * 180.02562 * 11 10 9 35 35 H 1.08003 * 120.05611 * 180.02562 * 12 11 10 36 36 H 0.96993 * 119.99867 * 179.97438 * 17 16 14 37 37 H 1.07991 * 120.15890 * 0.02562 * 22 9 8 38 38 H 1.09003 * 110.36660 * 143.19187 * 23 5 4 39 39 H 1.08999 * 110.36874 * 265.51905 * 23 5 4 40 40 H 0.96705 * 114.00258 * 298.54486 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0793 -0.7890 -1.2074 5 7 3.2446 -1.5519 -0.7364 6 6 3.9923 -2.3861 -1.4857 7 8 3.7186 -2.5612 -2.6574 8 7 5.0405 -3.0300 -0.9350 9 6 5.7468 -3.9816 -1.6795 10 6 7.1179 -4.1360 -1.4883 11 6 7.8267 -5.0748 -2.2192 12 6 7.1829 -5.8668 -3.1432 13 6 5.7979 -5.7220 -3.3472 14 6 5.1298 -6.5314 -4.2949 15 1 4.0850 -6.7700 -4.1604 16 6 5.8222 -7.0232 -5.4069 17 7 7.0156 -6.5671 -5.6887 18 14 5.0426 -8.3310 -6.4892 19 1 4.2657 -7.6780 -7.5732 20 1 6.1062 -9.1794 -7.0844 21 1 4.1362 -9.1755 -5.6703 22 6 5.0818 -4.7706 -2.5993 23 6 3.4633 -1.2486 0.6896 24 6 2.0789 -0.7934 1.2151 25 1 1.4452 -1.6512 1.4402 26 8 2.2179 0.0523 2.3585 27 1 -0.3633 0.4642 0.9168 28 1 -0.3633 0.5618 -0.8605 29 1 -0.3633 -1.0261 -0.0564 30 1 2.3815 -0.1003 -1.9963 31 1 1.3156 -1.4714 -1.5804 32 1 5.3051 -2.8340 -0.0227 33 1 7.6316 -3.5193 -0.7657 34 1 8.8894 -5.1868 -2.0630 35 1 7.7397 -6.5979 -3.7106 36 1 7.4957 -6.9082 -6.4594 37 1 4.0181 -4.6544 -2.7453 38 1 3.7960 -2.1406 1.2205 39 1 4.1931 -0.4465 0.7992 40 1 2.6474 -0.3737 3.1130 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001310752329.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:27 Heat of formation + Delta-G solvation = -75.759038 kcal Electronic energy + Delta-G solvation = -22698.939342 eV Core-core repulsion = 19284.383791 eV Total energy + Delta-G solvation = -3414.555551 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.74424 -39.97942 -38.80551 -36.57830 -36.20285 -34.92568 -33.64532 -31.74675 -30.08202 -29.58478 -27.40324 -27.11576 -24.31027 -23.04419 -22.71234 -21.37851 -20.92931 -19.71453 -19.01598 -18.43909 -17.48837 -17.26960 -16.67219 -16.40836 -16.21916 -15.90954 -15.22647 -15.06893 -14.70795 -14.55657 -14.39582 -14.17982 -13.94242 -13.57345 -13.41342 -13.13197 -13.08724 -12.83284 -12.59306 -12.50054 -12.21996 -12.11507 -12.02635 -11.60017 -11.48366 -11.36813 -11.15586 -11.01397 -10.74270 -9.80963 -9.36333 -8.69268 -8.56845 -6.38438 0.91112 1.00506 1.35949 1.44011 1.48635 1.51809 2.08814 2.22230 2.76349 2.82975 3.21626 3.42580 3.51069 3.73610 3.93747 4.15968 4.27015 4.40193 4.46376 4.56833 4.60954 4.63144 4.76427 4.85813 4.97326 4.99149 5.05623 5.10314 5.12403 5.18047 5.29088 5.34630 5.35528 5.72059 5.81154 6.02364 6.09948 6.12708 6.37319 6.69194 6.84249 6.88734 6.95010 7.01111 7.49581 8.37824 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024381 B = 0.003558 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.140584 B = 7866.638721 C = 8725.810277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 H 0.097 0.903 4 C 0.125 3.875 5 N -0.632 5.632 6 C 0.710 3.290 7 O -0.616 6.616 8 N -0.666 5.666 9 C 0.172 3.828 10 C -0.247 4.247 11 C -0.091 4.091 12 C -0.194 4.194 13 C 0.089 3.911 14 C -0.503 4.503 15 H 0.064 0.936 16 C 0.032 3.968 17 N -0.832 5.832 18 Si 0.986 3.014 19 H -0.267 1.267 20 H -0.259 1.259 21 H -0.259 1.259 22 C -0.234 4.234 23 C 0.062 3.938 24 C 0.108 3.892 25 H 0.085 0.915 26 O -0.561 6.561 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.416 0.584 33 H 0.133 0.867 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.287 0.713 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 10.568 15.748 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.106 4.106 3 H 0.115 0.885 4 C 0.002 3.998 5 N -0.371 5.371 6 C 0.412 3.588 7 O -0.495 6.495 8 N -0.314 5.314 9 C 0.078 3.922 10 C -0.268 4.268 11 C -0.109 4.109 12 C -0.214 4.214 13 C 0.086 3.914 14 C -0.533 4.533 15 H 0.083 0.917 16 C -0.181 4.181 17 N -0.459 5.459 18 Si 0.806 3.194 19 H -0.192 1.192 20 H -0.183 1.183 21 H -0.183 1.183 22 C -0.256 4.256 23 C -0.061 4.061 24 C 0.048 3.952 25 H 0.103 0.897 26 O -0.369 6.369 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.254 0.746 33 H 0.150 0.850 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -7.766 10.840 14.348 19.588 hybrid contribution 0.219 -0.835 -0.228 0.892 sum -7.547 10.006 14.120 18.880 Atomic orbital electron populations 1.21735 0.91931 1.02615 1.03229 1.22191 0.97705 0.99642 0.91091 0.88464 1.22039 0.86290 0.93901 0.97559 1.47373 1.31519 1.46390 1.11825 1.15687 0.80194 0.78916 0.83991 1.90977 1.72871 1.68621 1.17047 1.42314 1.31120 1.40896 1.17089 1.17311 0.90920 0.89313 0.94607 1.20446 0.91013 1.06850 1.08498 1.20848 0.99000 0.95650 0.95435 1.21370 0.95240 1.03493 1.01253 1.17835 0.93023 0.89856 0.90646 1.19761 0.97677 1.29032 1.06816 0.91733 1.26736 0.95020 0.97641 0.98713 1.69855 1.13149 1.37193 1.25659 0.85163 0.78918 0.77612 0.77697 1.19203 1.18308 1.18277 1.20941 0.98598 1.00444 1.05624 1.23302 1.00262 1.02390 0.80112 1.22843 0.93299 0.92863 0.86183 0.89699 1.86493 1.83489 1.42209 1.24702 0.90747 0.91421 0.92302 0.92131 0.91969 0.74625 0.84964 0.85628 0.87482 0.90201 0.89949 0.88860 0.89511 0.74767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.16 71.98 0.66 -1.19 16 2 C -0.09 -1.43 3.27 -9.60 -0.03 -1.46 16 3 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 4 C 0.13 3.04 6.48 86.73 0.56 3.60 16 5 N -0.63 -17.55 3.33 -829.73 -2.76 -20.31 16 6 C 0.71 27.92 8.22 179.05 1.47 29.39 16 7 O -0.62 -31.64 14.38 -3.99 -0.06 -31.70 16 8 N -0.67 -24.35 5.29 -317.32 -1.68 -26.02 16 9 C 0.17 8.01 6.26 38.10 0.24 8.25 16 10 C -0.25 -10.51 9.97 22.58 0.23 -10.28 16 11 C -0.09 -4.18 10.02 22.20 0.22 -3.96 16 12 C -0.19 -10.60 8.66 22.75 0.20 -10.40 16 13 C 0.09 5.25 5.55 -21.31 -0.12 5.13 16 14 C -0.50 -29.84 9.06 23.46 0.21 -29.63 16 15 H 0.06 3.79 7.87 -2.91 -0.02 3.76 16 16 C 0.03 1.75 5.25 85.25 0.45 2.20 16 17 N -0.83 -46.14 10.81 21.82 0.24 -45.90 16 18 Si 0.99 41.12 29.57 68.60 2.03 43.15 16 19 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 20 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 22 C -0.23 -13.07 8.39 22.85 0.19 -12.87 16 23 C 0.06 1.05 6.27 86.86 0.54 1.59 16 24 C 0.11 1.51 3.88 31.98 0.12 1.63 16 25 H 0.09 1.11 8.05 -2.38 -0.02 1.09 16 26 O -0.56 -6.50 13.47 -148.98 -2.01 -8.51 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.81 8.07 -2.39 -0.02 0.79 16 30 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.63 7.77 -2.38 -0.02 1.61 16 32 H 0.42 11.05 7.36 -92.71 -0.68 10.37 16 33 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 34 H 0.13 4.88 8.06 -2.91 -0.02 4.85 16 35 H 0.11 6.07 6.18 -2.91 -0.02 6.05 16 36 H 0.29 14.32 8.30 -92.71 -0.77 13.55 16 37 H 0.08 4.91 6.44 -2.91 -0.02 4.89 16 38 H 0.09 1.27 7.38 -2.39 -0.02 1.25 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.40 1.14 9.11 -74.05 -0.67 0.47 16 Total: -1.00 -77.79 331.97 0.43 -77.36 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.28 Total: 29.92 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: 4.95 Total: -17.99 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -4.20 Total: -92.23 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -2.06 Total: -40.21 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.15 kcal Total: -77.79 0.43 -77.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001310752329.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.602 kcal (2) G-P(sol) polarization free energy of solvation -77.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds