Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.87231 * 2 1 4 4 C 1.54328 * 110.01027 * 121.09883 * 2 1 3 5 5 C 1.55160 * 102.94081 * 141.68103 * 4 2 1 6 6 C 1.55130 * 101.48821 * 324.33378 * 5 4 2 7 7 N 1.47028 * 109.88169 * 238.98272 * 2 1 3 8 8 C 1.34777 * 125.64506 * 61.45259 * 7 2 1 9 9 O 1.21590 * 120.00110 * 359.97438 * 8 7 2 10 10 N 1.34772 * 119.99830 * 179.97438 * 8 7 2 11 11 C 1.40030 * 120.00228 * 175.49339 * 10 8 7 12 12 C 1.38912 * 120.00330 * 215.13066 * 11 10 8 13 13 C 1.38008 * 119.99799 * 180.02562 * 12 11 10 14 14 C 1.38905 * 120.00277 * 0.02562 * 13 12 11 15 15 O 1.35781 * 119.99871 * 179.97438 * 14 13 12 16 16 C 1.34812 * 116.99780 * 5.34826 * 15 14 13 17 17 H 1.07998 * 120.00234 * 354.95476 * 16 15 14 18 18 C 1.38636 * 119.99435 * 174.68653 * 16 15 14 19 19 N 1.31580 * 119.99826 * 180.26846 * 18 16 15 20 20 Si 1.86801 * 120.00243 * 0.27247 * 18 16 15 21 21 H 1.48503 * 109.46906 * 89.99886 * 20 18 16 22 22 H 1.48499 * 109.46912 * 209.99824 * 20 18 16 23 23 H 1.48500 * 109.46771 * 329.99889 * 20 18 16 24 24 C 1.38903 * 120.00074 * 0.23462 * 14 13 12 25 25 C 1.38016 * 119.99980 * 359.49000 * 24 14 13 26 26 H 1.08999 * 109.47236 * 179.56442 * 1 2 3 27 27 H 1.09005 * 109.46787 * 299.56211 * 1 2 3 28 28 H 1.09002 * 109.46982 * 59.56178 * 1 2 3 29 29 H 1.08996 * 110.71842 * 260.04656 * 4 2 1 30 30 H 1.08994 * 110.71859 * 23.32168 * 4 2 1 31 31 H 1.09005 * 111.00246 * 82.56772 * 5 4 2 32 32 H 1.08993 * 111.00279 * 206.38686 * 5 4 2 33 33 H 1.09002 * 110.49771 * 278.45827 * 6 5 4 34 34 H 1.08998 * 110.34845 * 156.05914 * 6 5 4 35 35 H 0.97003 * 120.00233 * 355.49563 * 10 8 7 36 36 H 1.07999 * 119.99597 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.99940 * 179.97438 * 13 12 11 38 38 H 0.96988 * 120.00031 * 180.02562 * 19 18 16 39 39 H 1.07992 * 119.99911 * 179.74467 * 24 14 13 40 40 H 1.08001 * 119.99697 * 180.22722 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 1.2417 5 6 3.2918 -1.5108 0.6893 6 6 2.8130 -1.8794 -0.7395 7 7 2.0300 -0.7125 -1.1849 8 6 1.8049 -0.3603 -2.4663 9 8 1.1362 0.6236 -2.7179 10 7 2.3210 -1.0986 -3.4687 11 6 2.0101 -0.7888 -4.7984 12 6 1.8697 -1.8059 -5.7340 13 6 1.5637 -1.5004 -7.0446 14 6 1.3967 -0.1759 -7.4283 15 8 1.0962 0.1246 -8.7179 16 6 0.8648 -0.9109 -9.5496 17 1 1.0020 -1.9240 -9.2018 18 6 0.4454 -0.6751 -10.8498 19 7 0.2144 -1.6858 -11.6600 20 14 0.2082 1.0774 -11.4515 21 1 1.4793 1.5767 -12.0349 22 1 -0.8562 1.1055 -12.4866 23 1 -0.1869 1.9429 -10.3114 24 6 1.5424 0.8415 -6.4939 25 6 1.8428 0.5357 -5.1820 26 1 -0.3634 -1.0276 -0.0078 27 1 -0.3633 0.5070 0.8939 28 1 -0.3633 0.5206 -0.8860 29 1 2.3556 -0.0452 2.0190 30 1 1.3104 -1.4472 1.6178 31 1 4.1681 -0.8634 0.6564 32 1 3.4924 -2.4071 1.2762 33 1 2.1851 -2.7700 -0.7137 34 1 3.6681 -2.0359 -1.3971 35 1 2.9079 -1.8447 -3.2691 36 1 2.0007 -2.8357 -5.4359 37 1 1.4550 -2.2911 -7.7721 38 1 -0.0786 -1.5209 -12.5698 39 1 1.4166 1.8715 -6.7932 40 1 1.9525 1.3266 -4.4548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319146984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = -19.227037 kcal Electronic energy + Delta-G solvation = -22519.755406 eV Core-core repulsion = 19107.651266 eV Total energy + Delta-G solvation = -3412.104140 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.66162 -39.15858 -38.02570 -36.40376 -34.10975 -32.34359 -31.69148 -31.48880 -30.24468 -27.89212 -26.11212 -25.20270 -23.26243 -22.27174 -21.80723 -20.75515 -19.57032 -18.30471 -17.79057 -17.32717 -16.78741 -16.22569 -15.28069 -14.88128 -14.62110 -14.14275 -13.88590 -13.83818 -13.74621 -13.58031 -13.31354 -13.04382 -12.72073 -12.51367 -12.25951 -12.24298 -11.91641 -11.76584 -11.58923 -11.52320 -11.14480 -11.03292 -10.91595 -10.70770 -10.16735 -9.89875 -9.61871 -9.24864 -8.82639 -8.68925 -8.23885 -6.98980 -6.38243 -4.03961 2.10344 2.18863 2.55390 3.24437 3.28671 3.31504 3.44946 3.89834 4.17001 4.27703 4.30359 4.52199 4.55862 4.85666 4.92525 4.97799 5.11904 5.15694 5.23302 5.32248 5.42174 5.45898 5.52931 5.54977 5.72047 5.76325 5.88490 6.02703 6.10041 6.15334 6.26094 6.32009 6.74985 6.76399 6.86896 7.15981 7.22682 7.27812 7.64629 7.82218 7.99374 8.06964 8.67018 8.97454 9.60783 10.69533 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040936 B = 0.002998 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.834056 B = 9335.906850 C = 9681.534915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.153 3.847 3 H 0.074 0.926 4 C -0.129 4.129 5 C -0.131 4.131 6 C 0.097 3.903 7 N -0.636 5.636 8 C 0.719 3.281 9 O -0.571 6.571 10 N -0.675 5.675 11 C 0.064 3.936 12 C -0.094 4.094 13 C -0.206 4.206 14 C 0.151 3.849 15 O -0.218 6.218 16 C -0.388 4.388 17 H 0.106 0.894 18 C 0.063 3.937 19 N -0.882 5.882 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.177 4.177 25 C -0.070 4.070 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.397 0.603 36 H 0.112 0.888 37 H 0.137 0.863 38 H 0.279 0.721 39 H 0.120 0.880 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 -1.182 24.874 25.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.092 0.908 4 C -0.167 4.167 5 C -0.170 4.170 6 C -0.026 4.026 7 N -0.375 5.375 8 C 0.422 3.578 9 O -0.448 6.448 10 N -0.322 5.322 11 C -0.029 4.029 12 C -0.115 4.115 13 C -0.225 4.225 14 C 0.099 3.901 15 O -0.123 6.123 16 C -0.464 4.464 17 H 0.123 0.877 18 C -0.140 4.140 19 N -0.520 5.520 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.197 4.197 25 C -0.090 4.090 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.232 0.768 36 H 0.130 0.870 37 H 0.155 0.845 38 H 0.089 0.911 39 H 0.138 0.862 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.501 -0.285 24.278 24.895 hybrid contribution 0.158 -0.075 -0.297 0.345 sum 5.659 -0.361 23.980 24.642 Atomic orbital electron populations 1.22172 0.94781 1.02229 1.03071 1.21368 0.94560 0.96014 0.83119 0.90822 1.22743 0.97677 0.99678 0.96581 1.22784 0.98120 1.01006 0.95045 1.22329 0.95091 0.89224 0.95996 1.47702 1.56281 1.29724 1.03841 1.15436 0.80060 0.83183 0.79158 1.90911 1.44094 1.27814 1.81972 1.42360 1.51096 1.34878 1.03904 1.17112 1.10441 0.93541 0.81839 1.20505 1.01090 0.96978 0.92926 1.21068 1.08362 0.96938 0.96161 1.19148 0.93675 0.92693 0.84627 1.83585 1.77440 1.35918 1.15368 1.20757 1.46217 0.87038 0.92359 0.87665 1.24463 0.95445 0.99335 0.94797 1.69654 1.44408 1.30795 1.07150 0.86180 0.78272 0.83562 0.78919 1.19906 1.20879 1.18262 1.20151 1.09685 0.98178 0.91682 1.20783 0.98446 0.95014 0.94783 0.92714 0.91923 0.90741 0.89962 0.90352 0.90457 0.89823 0.91411 0.90968 0.76814 0.87011 0.84516 0.91112 0.86176 0.85000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.11 37.16 0.34 -1.33 16 2 C 0.15 1.46 3.45 -66.95 -0.23 1.23 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.13 -0.76 6.48 -24.89 -0.16 -0.92 16 5 C -0.13 -0.69 7.10 -24.46 -0.17 -0.86 16 6 C 0.10 0.70 6.63 -2.41 -0.02 0.69 16 7 N -0.64 -7.08 3.06 -168.55 -0.52 -7.60 16 8 C 0.72 10.94 8.12 -86.92 -0.71 10.24 16 9 O -0.57 -10.84 12.80 5.29 0.07 -10.78 16 10 N -0.67 -9.72 5.30 -14.18 -0.08 -9.79 16 11 C 0.06 1.14 6.30 -83.61 -0.53 0.62 16 12 C -0.09 -1.72 9.96 -39.42 -0.39 -2.11 16 13 C -0.21 -4.45 9.16 -39.42 -0.36 -4.81 16 14 C 0.15 3.57 6.65 -39.09 -0.26 3.31 16 15 O -0.22 -5.85 8.58 0.01 0.00 -5.85 16 16 C -0.39 -11.03 9.94 30.88 0.31 -10.72 16 17 H 0.11 3.03 5.43 -52.49 -0.28 2.74 16 18 C 0.06 1.77 5.49 -17.51 -0.10 1.68 16 19 N -0.88 -25.68 13.96 55.48 0.77 -24.91 16 20 Si 0.91 22.03 28.62 -169.99 -4.86 17.16 16 21 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.26 -6.35 7.11 56.52 0.40 -5.95 16 24 C -0.18 -3.77 9.99 -39.42 -0.39 -4.16 16 25 C -0.07 -1.38 8.69 -39.41 -0.34 -1.72 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 1.01 6.87 -51.93 -0.36 0.65 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.42 7.86 -51.93 -0.41 0.01 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.45 7.22 -51.93 -0.37 0.08 16 35 H 0.40 4.35 7.27 -40.82 -0.30 4.05 16 36 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 37 H 0.14 3.06 5.63 -52.49 -0.30 2.77 16 38 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 39 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 40 H 0.13 2.57 6.23 -52.49 -0.33 2.24 16 LS Contribution 328.63 15.07 4.95 4.95 Total: -1.00 -32.71 328.63 -7.96 -40.67 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.28 Total: 5.02 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -3.02 Total: -8.89 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.18 Total: -42.30 kcal Atomic # 8 Polarization: -16.70 SS G_CDS: 0.07 Total: -16.63 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.86 Total: 17.16 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.71 -7.96 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319146984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.445 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds