Wall clock time and date at job start Tue Mar 31 2020 06:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.87231 * 2 1 4 4 C 1.54328 * 110.01027 * 121.09883 * 2 1 3 5 5 C 1.55160 * 102.94081 * 141.68103 * 4 2 1 6 6 C 1.55130 * 101.48821 * 324.33378 * 5 4 2 7 7 N 1.47028 * 109.88169 * 238.98272 * 2 1 3 8 8 C 1.34777 * 125.64506 * 61.45259 * 7 2 1 9 9 O 1.21590 * 120.00110 * 359.97438 * 8 7 2 10 10 N 1.34772 * 119.99830 * 179.97438 * 8 7 2 11 11 C 1.40030 * 120.00228 * 175.49339 * 10 8 7 12 12 C 1.38912 * 120.00330 * 215.13066 * 11 10 8 13 13 C 1.38008 * 119.99799 * 180.02562 * 12 11 10 14 14 C 1.38905 * 120.00277 * 0.02562 * 13 12 11 15 15 O 1.35781 * 119.99871 * 179.97438 * 14 13 12 16 16 C 1.34812 * 116.99780 * 5.34826 * 15 14 13 17 17 H 1.07998 * 120.00234 * 354.95476 * 16 15 14 18 18 C 1.38636 * 119.99435 * 174.68653 * 16 15 14 19 19 N 1.31580 * 119.99826 * 180.26846 * 18 16 15 20 20 Si 1.86801 * 120.00243 * 0.27247 * 18 16 15 21 21 H 1.48503 * 109.46906 * 89.99886 * 20 18 16 22 22 H 1.48499 * 109.46912 * 209.99824 * 20 18 16 23 23 H 1.48500 * 109.46771 * 329.99889 * 20 18 16 24 24 C 1.38903 * 120.00074 * 0.23462 * 14 13 12 25 25 C 1.38016 * 119.99980 * 359.49000 * 24 14 13 26 26 H 1.08999 * 109.47236 * 179.56442 * 1 2 3 27 27 H 1.09005 * 109.46787 * 299.56211 * 1 2 3 28 28 H 1.09002 * 109.46982 * 59.56178 * 1 2 3 29 29 H 1.08996 * 110.71842 * 260.04656 * 4 2 1 30 30 H 1.08994 * 110.71859 * 23.32168 * 4 2 1 31 31 H 1.09005 * 111.00246 * 82.56772 * 5 4 2 32 32 H 1.08993 * 111.00279 * 206.38686 * 5 4 2 33 33 H 1.09002 * 110.49771 * 278.45827 * 6 5 4 34 34 H 1.08998 * 110.34845 * 156.05914 * 6 5 4 35 35 H 0.97003 * 120.00233 * 355.49563 * 10 8 7 36 36 H 1.07999 * 119.99597 * 359.97438 * 12 11 10 37 37 H 1.07996 * 119.99940 * 179.97438 * 13 12 11 38 38 H 0.96988 * 120.00031 * 180.02562 * 19 18 16 39 39 H 1.07992 * 119.99911 * 179.74467 * 24 14 13 40 40 H 1.08001 * 119.99697 * 180.22722 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0581 -0.7490 1.2417 5 6 3.2918 -1.5108 0.6893 6 6 2.8130 -1.8794 -0.7395 7 7 2.0300 -0.7125 -1.1849 8 6 1.8049 -0.3603 -2.4663 9 8 1.1362 0.6236 -2.7179 10 7 2.3210 -1.0986 -3.4687 11 6 2.0101 -0.7888 -4.7984 12 6 1.8697 -1.8059 -5.7340 13 6 1.5637 -1.5004 -7.0446 14 6 1.3967 -0.1759 -7.4283 15 8 1.0962 0.1246 -8.7179 16 6 0.8648 -0.9109 -9.5496 17 1 1.0020 -1.9240 -9.2018 18 6 0.4454 -0.6751 -10.8498 19 7 0.2144 -1.6858 -11.6600 20 14 0.2082 1.0774 -11.4515 21 1 1.4793 1.5767 -12.0349 22 1 -0.8562 1.1055 -12.4866 23 1 -0.1869 1.9429 -10.3114 24 6 1.5424 0.8415 -6.4939 25 6 1.8428 0.5357 -5.1820 26 1 -0.3634 -1.0276 -0.0078 27 1 -0.3633 0.5070 0.8939 28 1 -0.3633 0.5206 -0.8860 29 1 2.3556 -0.0452 2.0190 30 1 1.3104 -1.4472 1.6178 31 1 4.1681 -0.8634 0.6564 32 1 3.4924 -2.4071 1.2762 33 1 2.1851 -2.7700 -0.7137 34 1 3.6681 -2.0359 -1.3971 35 1 2.9079 -1.8447 -3.2691 36 1 2.0007 -2.8357 -5.4359 37 1 1.4550 -2.2911 -7.7721 38 1 -0.0786 -1.5209 -12.5698 39 1 1.4166 1.8715 -6.7932 40 1 1.9525 1.3266 -4.4548 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319146984.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:05 Heat of formation + Delta-G solvation = -39.931242 kcal Electronic energy + Delta-G solvation = -22520.653207 eV Core-core repulsion = 19107.651266 eV Total energy + Delta-G solvation = -3413.001942 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.81685 -40.73943 -39.22790 -37.90545 -35.51566 -34.37465 -32.66113 -32.17644 -31.88382 -29.46526 -27.17780 -26.76276 -24.33980 -23.90740 -22.80198 -21.84763 -20.78845 -19.74163 -19.27896 -19.05707 -17.98313 -17.31618 -16.61340 -16.38574 -15.98419 -15.66893 -15.56925 -15.24302 -14.85443 -14.46585 -14.39797 -14.19507 -14.17364 -13.98663 -13.67299 -13.44408 -13.35769 -13.10592 -12.74871 -12.56918 -12.50403 -12.07503 -12.00263 -11.72398 -11.60042 -11.44940 -11.26539 -10.98816 -10.64169 -9.87383 -9.70277 -8.63849 -8.48628 -6.19562 0.48358 0.53135 1.32401 1.35920 1.49537 1.53000 2.06446 2.29452 2.77478 2.92146 3.03307 3.18622 3.64230 3.69255 4.01100 4.03673 4.11821 4.25619 4.36684 4.46674 4.47587 4.53548 4.66137 4.68771 4.73428 4.86789 4.96551 5.07136 5.10683 5.14009 5.15415 5.22380 5.36777 5.39882 5.47103 5.52627 5.56147 5.77034 5.91207 6.03845 6.21025 6.86142 6.89875 7.49261 7.60835 8.62765 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040936 B = 0.002998 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.834056 B = 9335.906850 C = 9681.534915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.143 3.857 3 H 0.061 0.939 4 C -0.118 4.118 5 C -0.123 4.123 6 C 0.086 3.914 7 N -0.631 5.631 8 C 0.712 3.288 9 O -0.615 6.615 10 N -0.665 5.665 11 C 0.090 3.910 12 C -0.086 4.086 13 C -0.211 4.211 14 C 0.113 3.887 15 O -0.245 6.245 16 C -0.397 4.397 17 H 0.087 0.913 18 C 0.012 3.988 19 N -0.922 5.922 20 Si 0.966 3.034 21 H -0.265 1.265 22 H -0.268 1.268 23 H -0.266 1.266 24 C -0.176 4.176 25 C -0.076 4.076 26 H 0.056 0.944 27 H 0.084 0.916 28 H 0.033 0.967 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.418 0.582 36 H 0.153 0.847 37 H 0.123 0.877 38 H 0.284 0.716 39 H 0.127 0.873 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.293 -1.754 28.244 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.079 0.921 4 C -0.156 4.156 5 C -0.161 4.161 6 C -0.036 4.036 7 N -0.369 5.369 8 C 0.414 3.586 9 O -0.495 6.495 10 N -0.314 5.314 11 C -0.004 4.004 12 C -0.106 4.106 13 C -0.231 4.231 14 C 0.064 3.936 15 O -0.152 6.152 16 C -0.474 4.474 17 H 0.104 0.896 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.789 3.211 21 H -0.190 1.190 22 H -0.193 1.193 23 H -0.191 1.191 24 C -0.195 4.195 25 C -0.097 4.097 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.052 0.948 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.103 0.897 35 H 0.256 0.744 36 H 0.170 0.830 37 H 0.141 0.859 38 H 0.094 0.906 39 H 0.145 0.855 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.719 -0.905 27.746 28.562 hybrid contribution -0.131 0.044 -0.931 0.941 sum 6.588 -0.861 26.814 27.625 Atomic orbital electron populations 1.22116 0.95472 1.02006 1.02172 1.21618 0.94122 0.96134 0.84187 0.92109 1.22732 0.98114 0.99892 0.94883 1.22802 0.97586 1.01998 0.93671 1.22695 0.95290 0.87997 0.97607 1.47791 1.55713 1.30715 1.02663 1.15645 0.79825 0.82683 0.80433 1.90889 1.45927 1.29732 1.82978 1.42186 1.51407 1.35493 1.02330 1.17205 1.06977 0.92817 0.83425 1.20761 0.99532 0.99050 0.91248 1.21125 1.08583 0.95864 0.97540 1.19565 0.95590 0.94267 0.84200 1.83531 1.79852 1.35254 1.16604 1.20749 1.46524 0.86946 0.93147 0.89561 1.25222 0.95413 1.03158 0.94899 1.69726 1.46252 1.32567 1.07781 0.85272 0.78835 0.78710 0.78276 1.18955 1.19279 1.19068 1.20308 1.09091 0.98182 0.91944 1.20909 0.98578 0.96172 0.94008 0.92447 0.89754 0.94758 0.88241 0.89213 0.90331 0.87201 0.90165 0.89696 0.74385 0.82962 0.85887 0.90608 0.85545 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.04 9.11 71.98 0.66 -2.39 16 2 C 0.14 2.42 3.45 45.34 0.16 2.58 16 3 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 4 C -0.12 -0.93 6.48 31.79 0.21 -0.72 16 5 C -0.12 -0.74 7.10 32.06 0.23 -0.51 16 6 C 0.09 0.90 6.63 86.93 0.58 1.48 16 7 N -0.63 -12.52 3.06 -805.42 -2.47 -14.99 16 8 C 0.71 20.48 8.12 179.06 1.45 21.93 16 9 O -0.62 -23.19 12.80 -4.00 -0.05 -23.24 16 10 N -0.66 -17.39 5.30 -317.04 -1.68 -19.07 16 11 C 0.09 3.08 6.30 38.15 0.24 3.32 16 12 C -0.09 -2.95 9.96 22.38 0.22 -2.73 16 13 C -0.21 -9.26 9.16 22.37 0.20 -9.06 16 14 C 0.11 5.50 6.65 22.59 0.15 5.65 16 15 O -0.24 -13.63 8.58 -22.90 -0.20 -13.83 16 16 C -0.40 -23.56 9.94 67.92 0.68 -22.89 16 17 H 0.09 5.26 5.43 -2.91 -0.02 5.24 16 18 C 0.01 0.67 5.49 84.83 0.47 1.14 16 19 N -0.92 -55.35 13.96 21.61 0.30 -55.04 16 20 Si 0.97 46.39 28.62 68.60 1.96 48.35 16 21 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 24 C -0.18 -7.55 9.99 22.38 0.22 -7.33 16 25 C -0.08 -2.95 8.69 22.38 0.19 -2.76 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.03 0.93 6.87 -2.39 -0.02 0.91 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.55 7.86 -2.39 -0.02 0.54 16 31 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 32 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.70 7.22 -2.39 -0.02 0.68 16 35 H 0.42 7.56 7.27 -92.71 -0.67 6.89 16 36 H 0.15 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.12 5.73 5.63 -2.91 -0.02 5.71 16 38 H 0.28 15.67 8.31 -92.72 -0.77 14.90 16 39 H 0.13 5.15 8.06 -2.91 -0.02 5.13 16 40 H 0.14 5.22 6.23 -2.91 -0.02 5.20 16 Total: -1.00 -74.68 328.63 3.91 -70.77 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: 0.39 Total: 19.33 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 5.65 Total: -12.29 kcal Atomic # 7 Polarization: -85.25 SS G_CDS: -3.85 Total: -89.10 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.25 Total: -37.07 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 1.96 Total: 48.35 kcal Total: -74.68 3.91 -70.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319146984.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.834 kcal (2) G-P(sol) polarization free energy of solvation -74.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds