Wall clock time and date at job start Tue Mar 31 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47139 * 2 1 4 4 N 1.46498 * 109.47207 * 120.00313 * 2 1 3 5 5 C 1.34783 * 119.99434 * 275.00081 * 4 2 1 6 6 O 1.21340 * 120.00486 * 359.97438 * 5 4 2 7 7 C 1.49458 * 119.99195 * 180.02562 * 5 4 2 8 8 O 1.21341 * 120.00594 * 359.97438 * 7 5 4 9 9 N 1.34774 * 119.99258 * 179.97438 * 7 5 4 10 10 C 1.46501 * 119.99834 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.47518 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47403 * 180.02562 * 11 10 9 13 13 H 1.07991 * 119.99755 * 0.02562 * 12 11 10 14 14 C 1.37876 * 119.99850 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00445 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 119.99714 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47041 * 60.00206 * 16 14 12 18 18 H 1.48501 * 109.47192 * 180.02562 * 16 14 12 19 19 H 1.48504 * 109.47124 * 300.00105 * 16 14 12 20 20 C 1.50696 * 109.47129 * 240.00401 * 2 1 3 21 21 C 1.38230 * 120.00346 * 99.99630 * 20 2 1 22 22 C 1.38235 * 120.00326 * 180.02562 * 21 20 2 23 23 C 1.38234 * 119.99814 * 359.97438 * 22 21 20 24 24 C 1.38239 * 120.00062 * 0.02871 * 23 22 21 25 25 C 1.38235 * 120.00123 * 359.97128 * 24 23 22 26 26 H 1.09002 * 109.46941 * 59.99516 * 1 2 3 27 27 H 1.08997 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47087 * 299.99750 * 1 2 3 29 29 H 0.97001 * 120.00226 * 94.99909 * 4 2 1 30 30 H 0.97001 * 120.00277 * 359.97438 * 9 7 5 31 31 H 1.09000 * 109.47497 * 300.00286 * 10 9 7 32 32 H 1.09006 * 109.47055 * 59.99791 * 10 9 7 33 33 H 1.09000 * 109.47086 * 300.00680 * 11 10 9 34 34 H 1.09005 * 109.46908 * 60.00450 * 11 10 9 35 35 H 0.96998 * 120.00371 * 179.97438 * 15 14 12 36 36 H 1.08000 * 120.00356 * 359.97438 * 21 20 2 37 37 H 1.08000 * 120.00616 * 179.70664 * 22 21 20 38 38 H 1.08001 * 120.00299 * 179.97438 * 23 22 21 39 39 H 1.08005 * 120.00087 * 180.02562 * 24 23 22 40 40 H 1.07999 * 120.00181 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1470 -0.0182 2.3571 6 8 1.8589 1.1592 2.4115 7 6 2.6458 -0.7228 3.5772 8 8 2.9344 -1.9001 3.5227 9 7 2.7750 -0.0503 4.7380 10 6 3.2633 -0.7409 5.9342 11 6 3.3160 0.2425 7.1051 12 6 3.8189 -0.4678 8.3355 13 1 4.0758 -1.5156 8.2869 14 6 3.9522 0.2204 9.5227 15 7 3.6399 1.4966 9.5817 16 14 4.5763 -0.6599 11.0475 17 1 5.9372 -1.1947 10.7882 18 1 4.6273 0.2945 12.1841 19 1 3.6600 -1.7794 11.3827 20 6 2.0323 -0.7103 -1.2305 21 6 2.4587 0.0195 -2.3243 22 6 2.9189 -0.6321 -3.4532 23 6 2.9534 -2.0135 -3.4881 24 6 2.5270 -2.7434 -2.3943 25 6 2.0667 -2.0919 -1.2653 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 2.2491 -1.6318 1.1525 30 1 2.5446 0.8910 4.7815 31 1 2.5906 -1.5627 6.1794 32 1 4.2624 -1.1334 5.7447 33 1 3.9889 1.0640 6.8597 34 1 2.3171 0.6353 7.2949 35 1 3.7333 1.9807 10.4171 36 1 2.4314 1.0988 -2.2973 37 1 3.2476 -0.0620 -4.3096 38 1 3.3126 -2.5227 -4.3702 39 1 2.5543 -3.8228 -2.4214 40 1 1.7340 -2.6621 -0.4106 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325316892.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:35 Heat of formation + Delta-G solvation = -79.694218 kcal Electronic energy + Delta-G solvation = -21726.200093 eV Core-core repulsion = 18311.473899 eV Total energy + Delta-G solvation = -3414.726194 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.86421 -40.47209 -39.49154 -37.10296 -36.47994 -34.84570 -32.83885 -31.78263 -31.69652 -30.18300 -27.51828 -25.80603 -24.39063 -23.61091 -22.82444 -21.77693 -21.28630 -19.80893 -18.58889 -17.93686 -17.74465 -17.13164 -16.72460 -16.53679 -16.28536 -15.95129 -15.78994 -15.40785 -14.95168 -14.79990 -14.47587 -14.30498 -14.26225 -14.05511 -13.40805 -13.26936 -13.14430 -12.93070 -12.82604 -12.60152 -12.54604 -12.27581 -11.99547 -11.80023 -11.69039 -11.46069 -10.74358 -10.61253 -10.46714 -10.21578 -9.84045 -9.70479 -8.23434 -6.34857 0.27754 0.35409 0.48024 1.30604 1.43608 1.45599 1.53761 2.09289 2.39636 2.63966 2.87487 3.11368 3.39650 3.50532 3.90837 4.09639 4.22161 4.25297 4.30276 4.38057 4.44436 4.58870 4.61131 4.68676 4.80421 4.83643 5.01784 5.06435 5.09045 5.17066 5.20039 5.41549 5.53671 5.54390 5.61025 5.62024 5.75128 5.90402 6.07839 6.12540 6.32616 6.67147 6.78915 6.90037 7.34648 8.88375 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037262 B = 0.002443 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.258777 B =11458.240434 C =11836.023780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.181 3.819 3 H 0.094 0.906 4 N -0.685 5.685 5 C 0.517 3.483 6 O -0.537 6.537 7 C 0.500 3.500 8 O -0.549 6.549 9 N -0.688 5.688 10 C 0.138 3.862 11 C 0.019 3.981 12 C -0.546 4.546 13 H 0.065 0.935 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.267 1.267 18 H -0.283 1.283 19 H -0.267 1.267 20 C -0.104 4.104 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.124 4.124 25 C -0.124 4.124 26 H 0.087 0.913 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.417 0.583 30 H 0.415 0.585 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.007 0.993 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.140 0.860 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.352 -5.497 -27.672 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.078 3.922 3 H 0.112 0.888 4 N -0.339 5.339 5 C 0.297 3.703 6 O -0.414 6.414 7 C 0.280 3.720 8 O -0.427 6.427 9 N -0.339 5.339 10 C 0.015 3.985 11 C -0.019 4.019 12 C -0.584 4.584 13 H 0.083 0.917 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.792 3.208 17 H -0.192 1.192 18 H -0.209 1.209 19 H -0.192 1.192 20 C -0.105 4.105 21 C -0.135 4.135 22 C -0.140 4.140 23 C -0.141 4.141 24 C -0.141 4.141 25 C -0.143 4.143 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.255 0.745 30 H 0.251 0.749 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.026 0.974 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.161 0.839 39 H 0.158 0.842 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.365 -5.341 -27.545 28.395 hybrid contribution 0.269 -0.077 1.137 1.171 sum -4.096 -5.418 -26.407 27.267 Atomic orbital electron populations 1.22141 0.92772 1.03213 1.03117 1.20007 0.95248 0.96415 0.80506 0.88837 1.45952 1.64552 1.15170 1.08188 1.19960 0.78859 0.86631 0.84809 1.90751 1.49660 1.15949 1.85064 1.20325 0.79677 0.86943 0.85019 1.90713 1.50558 1.16089 1.85382 1.46067 1.63353 1.15276 1.09172 1.21487 0.98494 0.95739 0.82776 1.19174 0.96502 0.94340 0.91859 1.21421 1.44708 0.97130 0.95155 0.91679 1.25927 0.95390 0.95614 1.02502 1.70069 1.49058 1.09684 1.27948 0.85454 0.79213 0.78241 0.77867 1.19177 1.20861 1.19162 1.19829 1.01206 0.94294 0.95132 1.21228 0.98375 1.00748 0.93109 1.21458 0.99075 0.95075 0.98414 1.21547 0.98956 0.94441 0.99149 1.21433 0.98382 1.01150 0.93178 1.21135 1.00246 0.93717 0.99177 0.89418 0.91389 0.92898 0.74490 0.74889 0.91947 0.92034 0.97434 0.97388 0.92555 0.84662 0.83801 0.83889 0.84182 0.85561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.46 71.98 0.68 -1.91 16 2 C 0.18 3.43 2.78 44.24 0.12 3.56 16 3 H 0.09 1.93 7.44 -2.39 -0.02 1.91 16 4 N -0.68 -15.67 5.02 -447.43 -2.25 -17.92 16 5 C 0.52 15.30 7.85 87.27 0.69 15.99 16 6 O -0.54 -17.79 16.14 -3.21 -0.05 -17.84 16 7 C 0.50 17.15 7.89 87.27 0.69 17.84 16 8 O -0.55 -20.48 16.48 -3.22 -0.05 -20.53 16 9 N -0.69 -25.28 5.55 -464.41 -2.58 -27.86 16 10 C 0.14 5.80 5.61 86.38 0.48 6.29 16 11 C 0.02 0.95 5.09 29.85 0.15 1.10 16 12 C -0.55 -30.19 9.11 25.60 0.23 -29.96 16 13 H 0.07 3.45 7.74 -2.92 -0.02 3.42 16 14 C 0.00 0.25 5.46 84.65 0.46 0.71 16 15 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 16 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 18 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 19 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 20 C -0.10 -1.71 4.95 -19.87 -0.10 -1.81 16 21 C -0.12 -1.67 9.67 22.27 0.22 -1.45 16 22 C -0.12 -1.48 10.05 22.27 0.22 -1.26 16 23 C -0.12 -1.44 10.05 22.27 0.22 -1.22 16 24 C -0.12 -1.62 10.05 22.27 0.22 -1.40 16 25 C -0.12 -1.92 9.06 22.27 0.20 -1.71 16 26 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.42 8.76 6.34 -92.71 -0.59 8.18 16 30 H 0.41 14.67 7.94 -92.71 -0.74 13.94 16 31 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 33 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.06 16 36 H 0.14 1.57 8.04 -2.91 -0.02 1.55 16 37 H 0.14 1.09 8.06 -2.91 -0.02 1.06 16 38 H 0.14 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.14 1.30 8.06 -2.91 -0.02 1.28 16 40 H 0.13 1.76 6.92 -2.91 -0.02 1.74 16 Total: -1.00 -66.29 348.30 1.62 -64.68 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.26 Total: 23.99 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: 4.50 Total: 4.75 kcal Atomic # 7 Polarization: -95.94 SS G_CDS: -4.54 Total: -100.47 kcal Atomic # 8 Polarization: -38.27 SS G_CDS: -0.10 Total: -38.37 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -66.29 1.62 -64.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325316892.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.018 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds