Wall clock time and date at job start Tue Mar 31 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99873 * 2 1 4 4 O 1.20820 * 119.99962 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99828 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.28625 * 60.67853 * 5 3 2 7 7 C 1.54262 * 110.32497 * 298.54827 * 5 3 2 8 8 C 1.54377 * 105.05620 * 241.10690 * 7 5 3 9 9 N 1.48554 * 104.59768 * 336.14379 * 8 7 5 10 10 C 1.38824 * 110.99898 * 159.04565 * 9 8 7 11 11 C 1.39789 * 119.58630 * 59.87190 * 10 9 8 12 12 C 1.38603 * 119.49210 * 180.02562 * 11 10 9 13 13 C 1.38385 * 118.67892 * 0.02562 * 12 11 10 14 14 C 1.40563 * 119.15088 * 359.97438 * 13 12 11 15 15 C 1.41319 * 119.78183 * 179.97438 * 14 13 12 16 16 H 1.07991 * 120.00177 * 17.31860 * 15 14 13 17 17 C 1.40021 * 119.99245 * 197.31866 * 15 14 13 18 18 N 1.30745 * 120.00763 * 22.76936 * 17 15 14 19 19 Si 1.86804 * 119.99620 * 202.76590 * 17 15 14 20 20 H 1.48497 * 109.47448 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47090 * 239.99988 * 19 17 15 22 22 H 1.48504 * 109.47220 * 120.00435 * 19 17 15 23 23 N 1.31961 * 119.58278 * 240.15350 * 10 9 8 24 24 C 1.48555 * 104.22264 * 39.48728 * 9 8 7 25 25 H 1.08998 * 110.41141 * 79.29411 * 24 9 8 26 26 C 1.53003 * 110.41440 * 201.73527 * 24 9 8 27 27 H 1.09001 * 109.46491 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47611 * 59.99355 * 1 2 3 29 29 H 1.09000 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.08999 * 110.32444 * 122.20852 * 7 5 3 31 31 H 1.09001 * 110.31990 * 0.02562 * 7 5 3 32 32 H 1.09011 * 110.40672 * 217.36689 * 8 7 5 33 33 H 1.09001 * 110.51445 * 94.98311 * 8 7 5 34 34 H 1.07993 * 120.25538 * 0.02562 * 11 10 9 35 35 H 1.07994 * 120.66025 * 179.97438 * 12 11 10 36 36 H 1.08003 * 120.42915 * 180.02562 * 13 12 11 37 37 H 0.96997 * 119.99472 * 5.39928 * 18 17 15 38 38 H 1.09003 * 109.46573 * 58.54494 * 26 24 9 39 39 H 1.08996 * 109.47282 * 178.54276 * 26 24 9 40 40 H 1.08995 * 109.46791 * 298.54641 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9696 0.7949 -0.8922 7 6 4.1381 0.6123 1.2697 8 6 4.8952 1.7397 2.0040 9 7 5.2327 2.7191 0.9393 10 6 5.4866 3.9728 1.4789 11 6 6.5246 4.1295 2.4019 12 6 6.7761 5.3819 2.9399 13 6 5.9850 6.4459 2.5436 14 6 4.9562 6.2245 1.6117 15 6 4.1399 7.3014 1.1981 16 1 4.4626 8.3184 1.3644 17 6 2.9127 7.0495 0.5727 18 7 2.3089 5.9042 0.7548 19 14 2.1380 8.3501 -0.5218 20 1 3.0147 9.5480 -0.5638 21 1 0.8090 8.7276 0.0227 22 1 1.9747 7.8084 -1.8948 23 7 4.7413 5.0003 1.1183 24 6 4.0262 2.7468 0.0730 25 1 3.2496 3.3656 0.5225 26 6 4.3824 3.2650 -1.3218 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 4.8234 -0.1918 1.0016 31 1 3.3302 0.2297 1.8934 32 1 5.8035 1.3504 2.4643 33 1 4.2563 2.2014 2.7568 34 1 7.1261 3.2813 2.6936 35 1 7.5730 5.5243 3.6547 36 1 6.1563 7.4340 2.9445 37 1 2.6704 5.2600 1.3834 38 1 5.1471 2.6254 -1.7626 39 1 3.4928 3.2546 -1.9514 40 1 4.7612 4.2841 -1.2449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326143134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:30 Heat of formation + Delta-G solvation = -46.668811 kcal Electronic energy + Delta-G solvation = -24106.217770 eV Core-core repulsion = 20692.923665 eV Total energy + Delta-G solvation = -3413.294105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65710 -39.29304 -37.41857 -36.16042 -33.86702 -32.27504 -31.15407 -30.14940 -28.81168 -27.57727 -25.65377 -25.21075 -22.35397 -22.10105 -21.29658 -20.17062 -19.27360 -18.21005 -17.26247 -16.68788 -16.21201 -15.48327 -14.96069 -14.86057 -14.52015 -14.07571 -13.84981 -13.54856 -13.37818 -13.06598 -12.69363 -12.44598 -12.19998 -12.01218 -11.81148 -11.53347 -11.42593 -11.27767 -10.99983 -10.92357 -10.75641 -10.68487 -10.64309 -10.37652 -10.23963 -10.05665 -9.82346 -9.09524 -8.84572 -8.30289 -7.94992 -7.18330 -6.90735 -4.54487 2.43092 2.66689 2.80005 2.86954 3.21693 3.32102 3.39601 4.09900 4.37587 4.65304 4.70859 4.79788 5.02706 5.13123 5.20345 5.26157 5.51698 5.53895 5.57702 5.66190 5.82999 5.90379 5.97769 6.12965 6.17011 6.21118 6.25330 6.46815 6.48610 6.60063 6.68950 6.74443 6.98252 7.03583 7.16847 7.51535 7.61045 7.67362 7.86104 7.96740 8.02418 8.21066 8.72616 8.86946 9.81785 10.23276 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.007075 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.035377 B = 3956.556269 C = 5528.237207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.458 3.542 4 O -0.478 6.478 5 C -0.090 4.090 6 H 0.114 0.886 7 C -0.110 4.110 8 C 0.045 3.955 9 N -0.456 5.456 10 C 0.327 3.673 11 C -0.324 4.324 12 C -0.038 4.038 13 C -0.291 4.291 14 C 0.263 3.737 15 C -0.489 4.489 16 H 0.080 0.920 17 C 0.037 3.963 18 N -0.745 5.745 19 Si 1.070 2.930 20 H -0.278 1.278 21 H -0.279 1.279 22 H -0.275 1.275 23 N -0.571 5.571 24 C 0.084 3.916 25 H 0.109 0.891 26 C -0.123 4.123 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.308 0.692 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.470 -10.946 -1.154 11.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.299 3.701 4 O -0.362 6.362 5 C -0.109 4.109 6 H 0.132 0.868 7 C -0.148 4.148 8 C -0.082 4.082 9 N -0.175 5.175 10 C 0.090 3.910 11 C -0.349 4.349 12 C -0.063 4.063 13 C -0.314 4.314 14 C 0.140 3.860 15 C -0.520 4.520 16 H 0.099 0.901 17 C -0.191 4.191 18 N -0.367 5.367 19 Si 0.894 3.106 20 H -0.203 1.203 21 H -0.205 1.205 22 H -0.200 1.200 23 N -0.291 5.291 24 C -0.023 4.023 25 H 0.127 0.873 26 C -0.181 4.181 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.068 0.932 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.210 -10.635 -2.993 11.505 hybrid contribution 1.339 0.042 2.045 2.445 sum -1.871 -10.593 -0.948 10.798 Atomic orbital electron populations 1.23213 0.76839 1.03167 1.02667 1.86490 1.23033 1.33898 1.84744 1.23723 0.92007 0.81369 0.73027 1.90797 1.66574 1.35779 1.43093 1.21978 0.86868 1.00324 1.01779 0.86790 1.22294 0.99819 0.98071 0.94639 1.23044 0.99604 0.92094 0.93420 1.62530 1.34374 1.05708 1.14921 1.19674 0.91531 0.89365 0.90446 1.20566 1.06385 0.97626 1.10291 1.20749 0.96284 0.92896 0.96333 1.21607 1.04627 0.98157 1.07019 1.18331 0.90558 0.89309 0.87850 1.20557 1.03556 0.93730 1.34129 0.90142 1.26914 0.94748 1.00099 0.97365 1.70219 1.37090 1.05589 1.23796 0.83582 0.75963 0.74487 0.76569 1.20318 1.20528 1.20017 1.68120 1.29951 0.99943 1.31085 1.22517 0.92654 0.91236 0.95930 0.87338 1.21544 1.00106 1.02570 0.93852 0.91986 0.91972 0.88444 0.89593 0.90691 0.89476 0.93225 0.88452 0.88423 0.88369 0.87594 0.93536 0.93010 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.11 10.52 -39.27 -0.41 -5.52 16 3 C 0.46 7.75 7.05 36.01 0.25 8.00 16 4 O -0.48 -10.01 15.21 -18.75 -0.29 -10.29 16 5 C -0.09 -1.42 3.11 -90.39 -0.28 -1.71 16 6 H 0.11 1.56 7.85 -51.93 -0.41 1.16 16 7 C -0.11 -1.51 6.62 -25.35 -0.17 -1.67 16 8 C 0.05 0.76 5.89 -2.19 -0.01 0.74 16 9 N -0.46 -9.22 5.10 -161.34 -0.82 -10.05 16 10 C 0.33 7.79 6.09 -155.32 -0.95 6.85 16 11 C -0.32 -7.32 9.41 -38.87 -0.37 -7.68 16 12 C -0.04 -0.87 10.15 -39.39 -0.40 -1.27 16 13 C -0.29 -7.28 9.83 -38.65 -0.38 -7.66 16 14 C 0.26 7.18 6.18 -85.00 -0.53 6.66 16 15 C -0.49 -13.24 9.05 -37.74 -0.34 -13.58 16 16 H 0.08 2.09 7.94 -52.49 -0.42 1.67 16 17 C 0.04 0.98 5.28 -17.35 -0.09 0.89 16 18 N -0.74 -20.70 13.08 55.55 0.73 -19.97 16 19 Si 1.07 22.51 29.99 -169.99 -5.10 17.42 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 N -0.57 -15.07 4.87 -10.33 -0.05 -15.12 16 24 C 0.08 1.70 1.76 -66.07 -0.12 1.58 16 25 H 0.11 2.65 5.19 -51.93 -0.27 2.38 16 26 C -0.12 -2.47 9.27 37.16 0.34 -2.13 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 0.95 7.69 -51.93 -0.40 0.55 16 32 H 0.09 1.28 7.99 -51.92 -0.41 0.87 16 33 H 0.05 0.91 7.97 -51.93 -0.41 0.50 16 34 H 0.10 1.97 7.85 -52.49 -0.41 1.56 16 35 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.10 2.30 8.06 -52.48 -0.42 1.88 16 37 H 0.31 8.92 5.70 -40.82 -0.23 8.69 16 38 H 0.05 0.81 8.12 -51.93 -0.42 0.39 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.07 1.75 7.18 -51.93 -0.37 1.38 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -30.93 330.58 -8.44 -39.37 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.51 Total: 8.69 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -1.96 Total: -9.51 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: -0.15 Total: -45.13 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.70 Total: -15.81 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.10 Total: 17.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.93 -8.44 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.298 kcal (2) G-P(sol) polarization free energy of solvation -30.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds