Wall clock time and date at job start Tue Mar 31 2020 06:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34233 * 116.99873 * 2 1 4 4 O 1.20820 * 119.99962 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99828 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.28625 * 60.67853 * 5 3 2 7 7 C 1.54262 * 110.32497 * 298.54827 * 5 3 2 8 8 C 1.54377 * 105.05620 * 241.10690 * 7 5 3 9 9 N 1.48554 * 104.59768 * 336.14379 * 8 7 5 10 10 C 1.38824 * 110.99898 * 159.04565 * 9 8 7 11 11 C 1.39789 * 119.58630 * 59.87190 * 10 9 8 12 12 C 1.38603 * 119.49210 * 180.02562 * 11 10 9 13 13 C 1.38385 * 118.67892 * 0.02562 * 12 11 10 14 14 C 1.40563 * 119.15088 * 359.97438 * 13 12 11 15 15 C 1.41319 * 119.78183 * 179.97438 * 14 13 12 16 16 H 1.07991 * 120.00177 * 17.31860 * 15 14 13 17 17 C 1.40021 * 119.99245 * 197.31866 * 15 14 13 18 18 N 1.30745 * 120.00763 * 22.76936 * 17 15 14 19 19 Si 1.86804 * 119.99620 * 202.76590 * 17 15 14 20 20 H 1.48497 * 109.47448 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47090 * 239.99988 * 19 17 15 22 22 H 1.48504 * 109.47220 * 120.00435 * 19 17 15 23 23 N 1.31961 * 119.58278 * 240.15350 * 10 9 8 24 24 C 1.48555 * 104.22264 * 39.48728 * 9 8 7 25 25 H 1.08998 * 110.41141 * 79.29411 * 24 9 8 26 26 C 1.53003 * 110.41440 * 201.73527 * 24 9 8 27 27 H 1.09001 * 109.46491 * 299.99087 * 1 2 3 28 28 H 1.08994 * 109.47611 * 59.99355 * 1 2 3 29 29 H 1.09000 * 109.47056 * 179.97438 * 1 2 3 30 30 H 1.08999 * 110.32444 * 122.20852 * 7 5 3 31 31 H 1.09001 * 110.31990 * 0.02562 * 7 5 3 32 32 H 1.09011 * 110.40672 * 217.36689 * 8 7 5 33 33 H 1.09001 * 110.51445 * 94.98311 * 8 7 5 34 34 H 1.07993 * 120.25538 * 0.02562 * 11 10 9 35 35 H 1.07994 * 120.66025 * 179.97438 * 12 11 10 36 36 H 1.08003 * 120.42915 * 180.02562 * 13 12 11 37 37 H 0.96997 * 119.99472 * 5.39928 * 18 17 15 38 38 H 1.09003 * 109.46573 * 58.54494 * 26 24 9 39 39 H 1.08996 * 109.47282 * 178.54276 * 26 24 9 40 40 H 1.08995 * 109.46791 * 298.54641 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9696 0.7949 -0.8922 7 6 4.1381 0.6123 1.2697 8 6 4.8952 1.7397 2.0040 9 7 5.2327 2.7191 0.9393 10 6 5.4866 3.9728 1.4789 11 6 6.5246 4.1295 2.4019 12 6 6.7761 5.3819 2.9399 13 6 5.9850 6.4459 2.5436 14 6 4.9562 6.2245 1.6117 15 6 4.1399 7.3014 1.1981 16 1 4.4626 8.3184 1.3644 17 6 2.9127 7.0495 0.5727 18 7 2.3089 5.9042 0.7548 19 14 2.1380 8.3501 -0.5218 20 1 3.0147 9.5480 -0.5638 21 1 0.8090 8.7276 0.0227 22 1 1.9747 7.8084 -1.8948 23 7 4.7413 5.0003 1.1183 24 6 4.0262 2.7468 0.0730 25 1 3.2496 3.3656 0.5225 26 6 4.3824 3.2650 -1.3218 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 4.8234 -0.1918 1.0016 31 1 3.3302 0.2297 1.8934 32 1 5.8035 1.3504 2.4643 33 1 4.2563 2.2014 2.7568 34 1 7.1261 3.2813 2.6936 35 1 7.5730 5.5243 3.6547 36 1 6.1563 7.4340 2.9445 37 1 2.6704 5.2600 1.3834 38 1 5.1471 2.6254 -1.7626 39 1 3.4928 3.2546 -1.9514 40 1 4.7612 4.2841 -1.2449 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326143134.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:30 Heat of formation + Delta-G solvation = -64.840237 kcal Electronic energy + Delta-G solvation = -24107.005742 eV Core-core repulsion = 20692.923665 eV Total energy + Delta-G solvation = -3414.082077 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.03468 -40.88786 -39.05119 -37.48629 -35.76196 -33.85829 -32.76593 -31.91129 -30.48797 -28.76698 -27.20419 -26.94304 -23.97495 -23.63575 -22.94723 -21.72441 -20.78476 -20.00219 -18.67089 -17.99466 -17.54854 -17.02569 -16.76571 -16.30260 -16.15674 -15.78060 -15.41944 -15.17867 -14.77198 -14.33598 -14.27704 -14.09802 -13.81667 -13.55229 -13.19995 -13.08425 -12.90710 -12.81759 -12.64295 -12.51343 -12.36856 -12.14447 -11.99660 -11.83014 -11.76479 -11.60211 -11.38339 -10.96863 -10.62392 -10.21102 -9.88183 -9.06120 -8.86498 -6.58526 0.78243 0.99613 1.12833 1.47629 1.61332 1.63263 1.75610 2.33714 2.68900 2.98131 3.26848 3.49358 3.66673 3.88043 4.05879 4.15257 4.21767 4.29348 4.31019 4.31392 4.43594 4.54648 4.64885 4.66427 4.67692 4.75596 4.81116 4.84237 4.88636 5.02954 5.04661 5.24327 5.31680 5.37591 5.46567 5.65850 5.72539 5.78480 5.85881 6.08156 6.32888 6.70751 6.77232 6.90441 7.90010 8.16246 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.007075 C = 0.005064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.035377 B = 3956.556269 C = 5528.237207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.462 3.538 4 O -0.529 6.529 5 C -0.084 4.084 6 H 0.146 0.854 7 C -0.096 4.096 8 C 0.041 3.959 9 N -0.451 5.451 10 C 0.309 3.691 11 C -0.316 4.316 12 C -0.034 4.034 13 C -0.318 4.318 14 C 0.235 3.765 15 C -0.528 4.528 16 H 0.080 0.920 17 C 0.003 3.997 18 N -0.772 5.772 19 Si 1.119 2.881 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.275 1.275 23 N -0.588 5.588 24 C 0.080 3.920 25 H 0.063 0.937 26 C -0.114 4.114 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.023 0.977 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.104 0.896 37 H 0.290 0.710 38 H 0.075 0.925 39 H 0.049 0.951 40 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.414 -13.608 -1.221 13.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.305 3.695 4 O -0.417 6.417 5 C -0.104 4.104 6 H 0.164 0.836 7 C -0.134 4.134 8 C -0.085 4.085 9 N -0.170 5.170 10 C 0.072 3.928 11 C -0.341 4.341 12 C -0.058 4.058 13 C -0.340 4.340 14 C 0.111 3.889 15 C -0.559 4.559 16 H 0.098 0.902 17 C -0.219 4.219 18 N -0.394 5.394 19 Si 0.937 3.063 20 H -0.183 1.183 21 H -0.191 1.191 22 H -0.200 1.200 23 N -0.309 5.309 24 C -0.028 4.028 25 H 0.081 0.919 26 C -0.172 4.172 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.146 0.854 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.042 0.958 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.122 0.878 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.068 0.932 40 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.134 -13.345 -3.037 13.851 hybrid contribution 1.114 0.703 2.147 2.519 sum -1.020 -12.641 -0.891 12.714 Atomic orbital electron populations 1.23545 0.75079 1.05813 1.02108 1.86475 1.24654 1.31934 1.83915 1.23941 0.92464 0.81391 0.71654 1.90800 1.67689 1.37621 1.45597 1.21951 0.86416 0.97512 1.04509 0.83647 1.22346 1.00497 0.97556 0.92974 1.23243 1.00889 0.91946 0.92450 1.62581 1.34147 1.04473 1.15789 1.20246 0.91612 0.90306 0.90648 1.21016 1.05566 0.98679 1.08818 1.21182 0.96364 0.92079 0.96211 1.21785 1.05274 0.99482 1.07493 1.18766 0.91550 0.90014 0.88585 1.20765 1.04674 0.93895 1.36574 0.90205 1.28315 0.94909 1.01067 0.97647 1.70336 1.37706 1.06457 1.24940 0.83001 0.76006 0.72666 0.74648 1.18332 1.19121 1.20041 1.68151 1.30729 1.00299 1.31672 1.22358 0.91518 0.93727 0.95228 0.91868 1.21434 1.00616 1.00618 0.94502 0.92837 0.92415 0.84096 0.85421 0.89525 0.86638 0.95845 0.85248 0.84453 0.87824 0.89569 0.90620 0.93218 0.94984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 10.56 113.37 1.20 1.76 16 2 O -0.35 -9.10 10.52 -51.44 -0.54 -9.64 16 3 C 0.46 15.26 7.05 71.24 0.50 15.77 16 4 O -0.53 -22.87 15.21 21.98 0.33 -22.54 16 5 C -0.08 -2.50 3.11 -10.64 -0.03 -2.53 16 6 H 0.15 3.42 7.85 -2.39 -0.02 3.40 16 7 C -0.10 -2.27 6.62 31.49 0.21 -2.06 16 8 C 0.04 1.27 5.89 86.45 0.51 1.78 16 9 N -0.45 -17.76 5.10 -664.37 -3.39 -21.15 16 10 C 0.31 14.78 6.09 133.41 0.81 15.59 16 11 C -0.32 -13.76 9.41 22.73 0.21 -13.55 16 12 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 13 C -0.32 -16.16 9.83 22.87 0.22 -15.94 16 14 C 0.24 13.41 6.18 40.18 0.25 13.66 16 15 C -0.53 -30.11 9.05 23.46 0.21 -29.89 16 16 H 0.08 4.36 7.94 -2.91 -0.02 4.34 16 17 C 0.00 0.17 5.28 85.29 0.45 0.62 16 18 N -0.77 -45.54 13.08 21.84 0.29 -45.25 16 19 Si 1.12 46.95 29.99 68.60 2.06 49.01 16 20 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 22 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 23 N -0.59 -32.35 4.87 -186.58 -0.91 -33.26 16 24 C 0.08 3.23 1.76 45.07 0.08 3.31 16 25 H 0.06 3.24 5.19 -2.39 -0.01 3.23 16 26 C -0.11 -4.65 9.27 71.98 0.67 -3.98 16 27 H 0.05 1.20 8.13 -2.39 -0.02 1.18 16 28 H 0.06 1.25 8.13 -2.39 -0.02 1.23 16 29 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.09 1.89 7.69 -2.39 -0.02 1.87 16 32 H 0.12 2.92 7.99 -2.38 -0.02 2.90 16 33 H 0.02 0.84 7.97 -2.39 -0.02 0.82 16 34 H 0.13 4.75 7.85 -2.91 -0.02 4.73 16 35 H 0.14 4.86 8.06 -2.91 -0.02 4.84 16 36 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 37 H 0.29 18.03 5.70 -92.71 -0.53 17.50 16 38 H 0.07 2.55 8.12 -2.39 -0.02 2.53 16 39 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.03 1.55 7.18 -2.39 -0.02 1.53 16 Total: -1.00 -73.33 330.58 4.64 -68.69 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: 1.28 Total: 30.87 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 5.52 Total: -16.74 kcal Atomic # 7 Polarization: -95.64 SS G_CDS: -4.01 Total: -99.65 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -0.21 Total: -32.18 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.06 Total: 49.01 kcal Total: -73.33 4.64 -68.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326143134.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.848 kcal (2) G-P(sol) polarization free energy of solvation -73.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds