Wall clock time and date at job start Tue Mar 31 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 O 1.21279 * 119.99679 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.47063 * 136.06124 * 359.63519 * 7 5 4 9 9 C 1.53747 * 87.89212 * 152.95997 * 8 7 5 10 10 O 1.42902 * 114.39524 * 272.67433 * 9 8 7 11 11 C 1.50704 * 114.27074 * 139.79210 * 9 8 7 12 12 H 1.08004 * 119.99707 * 266.48094 * 11 9 8 13 13 C 1.37871 * 120.00113 * 86.47316 * 11 9 8 14 14 N 1.31518 * 120.00007 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00033 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47367 * 89.99876 * 15 13 11 17 17 H 1.48502 * 109.46951 * 210.00204 * 15 13 11 18 18 H 1.48500 * 109.47032 * 330.00045 * 15 13 11 19 19 C 1.47070 * 136.05505 * 180.02562 * 7 5 4 20 20 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 21 21 C 1.38652 * 120.78996 * 299.72352 * 20 2 1 22 22 C 1.38200 * 119.15696 * 179.75432 * 21 20 2 23 23 N 1.31871 * 120.77015 * 0.53017 * 22 21 20 24 24 C 1.31863 * 121.72121 * 359.74055 * 23 22 21 25 25 C 1.38213 * 120.76788 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 30 30 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 31 31 H 1.09001 * 113.46612 * 267.69192 * 8 7 5 32 32 H 1.09003 * 113.46811 * 38.12538 * 8 7 5 33 33 H 0.96702 * 114.00304 * 273.58659 * 10 9 8 34 34 H 0.96996 * 120.00167 * 179.97438 * 14 13 11 35 35 H 1.09005 * 113.46708 * 321.86614 * 19 7 5 36 36 H 1.08990 * 113.46857 * 92.30869 * 19 7 5 37 37 H 1.08003 * 120.41510 * 359.97438 * 21 20 2 38 38 H 1.08005 * 119.61248 * 180.24591 * 22 21 20 39 39 H 1.08003 * 119.61973 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.42154 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0869 2.3633 7 7 1.9845 -0.3919 3.7002 8 6 2.7102 -1.5529 4.2371 9 6 3.0826 -0.6867 5.4516 10 8 4.2738 0.0845 5.2835 11 6 3.0241 -1.4123 6.7712 12 1 2.1247 -1.3758 7.3681 13 6 4.1185 -2.1229 7.2163 14 7 5.2138 -2.1671 6.4896 15 14 4.0458 -3.0228 8.8516 16 1 3.5485 -4.4051 8.6343 17 1 5.4042 -3.0736 9.4495 18 1 3.1268 -2.3050 9.7711 19 6 1.7919 0.0600 5.0864 20 6 2.0323 -0.7105 -1.2305 21 6 1.7121 -2.0393 -1.4632 22 6 2.1868 -2.6563 -2.6052 23 7 2.9438 -1.9992 -3.4620 24 6 3.2727 -0.7367 -3.2702 25 6 2.8303 -0.0525 -2.1538 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -1.7199 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 2.0618 -2.3931 4.4857 32 1 3.5680 -1.8464 3.6320 33 1 5.0848 -0.3889 5.5144 34 1 5.9839 -2.6666 6.8029 35 1 1.8673 1.1410 5.2050 36 1 0.9018 -0.3553 5.5586 37 1 1.0966 -2.5842 -0.7627 38 1 1.9386 -3.6900 -2.7958 39 1 3.8951 -0.2314 -3.9939 40 1 3.1027 0.9816 -2.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328924279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:24 Heat of formation + Delta-G solvation = -20.998803 kcal Electronic energy + Delta-G solvation = -22716.698727 eV Core-core repulsion = 19304.517758 eV Total energy + Delta-G solvation = -3412.180969 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.46859 -39.61404 -37.80898 -35.48609 -34.04814 -32.23469 -31.39513 -31.00767 -29.34675 -27.28509 -25.24972 -25.12222 -24.15784 -23.48704 -20.91584 -19.91079 -18.24508 -17.55757 -16.99259 -16.38702 -16.04288 -15.61256 -15.41715 -15.15161 -14.95071 -14.26271 -14.14913 -13.83798 -13.67192 -13.45627 -13.11917 -12.80774 -12.48760 -12.30342 -11.99743 -11.87052 -11.60531 -11.33494 -11.26857 -11.09686 -11.02381 -10.80956 -10.52813 -10.30834 -9.68915 -9.60316 -9.56118 -9.26878 -9.17704 -8.81749 -8.43005 -7.89035 -6.44724 -4.55262 1.02179 1.14222 3.11047 3.14141 3.19778 3.22923 3.48548 3.72284 4.14256 4.33945 4.47420 4.58866 4.78452 4.93965 5.01959 5.04571 5.10602 5.10668 5.37464 5.53967 5.57688 5.64215 5.65766 5.74397 5.87286 5.89316 5.98477 6.04100 6.15007 6.34902 6.36209 6.40371 6.48963 6.58734 6.59603 6.63436 7.06280 7.58548 7.75961 7.85005 8.46102 8.49965 8.71500 9.16428 9.44235 10.61961 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023173 B = 0.003440 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.014072 B = 8138.025669 C = 8710.601921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 H 0.090 0.910 4 C -0.125 4.125 5 C 0.536 3.464 6 O -0.562 6.562 7 N -0.634 5.634 8 C 0.070 3.930 9 C 0.240 3.760 10 O -0.571 6.571 11 C -0.534 4.534 12 H 0.073 0.927 13 C 0.072 3.928 14 N -0.898 5.898 15 Si 0.909 3.091 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.106 3.894 20 C -0.027 4.027 21 C -0.168 4.168 22 C 0.097 3.903 23 N -0.493 5.493 24 C 0.097 3.903 25 C -0.170 4.170 26 H 0.052 0.948 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.394 0.606 34 H 0.274 0.726 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.134 0.866 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.581 -1.230 -12.783 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.056 4.056 3 H 0.109 0.891 4 C -0.165 4.165 5 C 0.326 3.674 6 O -0.443 6.443 7 N -0.367 5.367 8 C -0.053 4.053 9 C 0.198 3.802 10 O -0.384 6.384 11 C -0.572 4.572 12 H 0.091 0.909 13 C -0.130 4.130 14 N -0.539 5.539 15 Si 0.736 3.264 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.195 1.195 19 C -0.016 4.016 20 C -0.035 4.035 21 C -0.187 4.187 22 C -0.059 4.059 23 N -0.202 5.202 24 C -0.059 4.059 25 C -0.190 4.190 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.250 0.750 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.171 0.829 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.877 -0.678 -13.989 14.830 hybrid contribution 0.207 -0.709 1.692 1.846 sum -4.670 -1.387 -12.297 13.227 Atomic orbital electron populations 1.21950 0.93290 1.01773 1.03421 1.19943 0.97026 0.99370 0.89293 0.89123 1.21608 1.03042 0.99892 0.91955 1.19915 0.78934 0.85519 0.83035 1.90601 1.42080 1.25534 1.86114 1.49754 1.54799 1.27451 1.04718 1.24272 0.94387 0.90224 0.96426 1.19581 0.82904 0.86723 0.90970 1.86044 1.18031 1.44128 1.90233 1.21441 1.00576 1.30793 1.04438 0.90926 1.25080 0.94846 0.95296 0.97816 1.69258 1.03988 1.42375 1.38271 0.86306 0.77739 0.79743 0.82602 1.20270 1.20855 1.19498 1.23323 0.99276 1.00486 0.78518 1.20414 0.93782 0.93899 0.95395 1.22046 1.02084 0.95300 0.99314 1.22736 0.93158 0.99877 0.90150 1.67660 1.12548 1.09233 1.30791 1.22736 0.96925 0.90413 0.95850 1.22126 0.99410 1.01732 0.95691 0.92923 0.89694 0.93098 0.89191 0.89056 0.90062 0.91789 0.74953 0.91541 0.91583 0.89750 0.84813 0.82877 0.82878 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.76 37.16 0.33 -1.52 16 2 C -0.04 -0.48 2.24 -91.77 -0.21 -0.69 16 3 H 0.09 1.25 7.76 -51.93 -0.40 0.85 16 4 C -0.12 -1.82 4.75 -27.88 -0.13 -1.95 16 5 C 0.54 10.16 7.79 -10.99 -0.09 10.08 16 6 O -0.56 -11.90 14.74 5.56 0.08 -11.82 16 7 N -0.63 -12.88 3.69 -185.05 -0.68 -13.56 16 8 C 0.07 1.45 7.86 -8.38 -0.07 1.38 16 9 C 0.24 5.62 1.58 -91.11 -0.14 5.48 16 10 O -0.57 -14.52 13.55 -35.23 -0.48 -14.99 16 11 C -0.53 -13.06 8.70 -34.44 -0.30 -13.36 16 12 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 13 C 0.07 1.75 5.39 -17.82 -0.10 1.66 16 14 N -0.90 -22.30 11.01 55.43 0.61 -21.69 16 15 Si 0.91 18.99 29.54 -169.99 -5.02 13.97 16 16 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 18 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 19 C 0.11 2.26 8.02 -8.50 -0.07 2.20 16 20 C -0.03 -0.31 4.80 -104.31 -0.50 -0.81 16 21 C -0.17 -1.80 8.89 -39.44 -0.35 -2.15 16 22 C 0.10 1.04 11.18 -17.55 -0.20 0.85 16 23 N -0.49 -5.98 10.36 -13.25 -0.14 -6.12 16 24 C 0.10 1.04 11.18 -17.55 -0.20 0.85 16 25 C -0.17 -1.84 9.76 -39.44 -0.39 -2.22 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.28 5.95 -51.93 -0.31 0.97 16 28 H 0.05 0.57 7.50 -51.93 -0.39 0.18 16 29 H 0.09 1.16 7.65 -51.93 -0.40 0.77 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.08 1.58 8.10 -51.93 -0.42 1.16 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.39 10.11 6.32 45.56 0.29 10.40 16 34 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 35 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 37 H 0.13 1.23 7.35 -52.48 -0.39 0.84 16 38 H 0.15 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.15 1.22 8.06 -52.48 -0.42 0.80 16 40 H 0.13 1.23 8.01 -52.49 -0.42 0.81 16 LS Contribution 336.66 15.07 5.07 5.07 Total: -1.00 -28.30 336.66 -7.89 -36.19 By element: Atomic # 1 Polarization: 18.11 SS G_CDS: -4.94 Total: 13.17 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -2.40 Total: -0.22 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: -0.21 Total: -41.37 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.40 Total: -26.82 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.30 -7.89 -36.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328924279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.195 kcal (2) G-P(sol) polarization free energy of solvation -28.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds