Wall clock time and date at job start Tue Mar 31 2020 06:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 5 5 C 1.50703 * 109.46967 * 294.99707 * 4 2 1 6 6 O 1.21279 * 119.99679 * 0.02562 * 5 4 2 7 7 N 1.34770 * 119.99899 * 179.97438 * 5 4 2 8 8 C 1.47063 * 136.06124 * 359.63519 * 7 5 4 9 9 C 1.53747 * 87.89212 * 152.95997 * 8 7 5 10 10 O 1.42902 * 114.39524 * 272.67433 * 9 8 7 11 11 C 1.50704 * 114.27074 * 139.79210 * 9 8 7 12 12 H 1.08004 * 119.99707 * 266.48094 * 11 9 8 13 13 C 1.37871 * 120.00113 * 86.47316 * 11 9 8 14 14 N 1.31518 * 120.00007 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00033 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47367 * 89.99876 * 15 13 11 17 17 H 1.48502 * 109.46951 * 210.00204 * 15 13 11 18 18 H 1.48500 * 109.47032 * 330.00045 * 15 13 11 19 19 C 1.47070 * 136.05505 * 180.02562 * 7 5 4 20 20 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 21 21 C 1.38652 * 120.78996 * 299.72352 * 20 2 1 22 22 C 1.38200 * 119.15696 * 179.75432 * 21 20 2 23 23 N 1.31871 * 120.77015 * 0.53017 * 22 21 20 24 24 C 1.31863 * 121.72121 * 359.74055 * 23 22 21 25 25 C 1.38213 * 120.76788 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 27 27 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 28 28 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47326 * 54.99931 * 4 2 1 30 30 H 1.09000 * 109.46904 * 175.00284 * 4 2 1 31 31 H 1.09001 * 113.46612 * 267.69192 * 8 7 5 32 32 H 1.09003 * 113.46811 * 38.12538 * 8 7 5 33 33 H 0.96702 * 114.00304 * 273.58659 * 10 9 8 34 34 H 0.96996 * 120.00167 * 179.97438 * 14 13 11 35 35 H 1.09005 * 113.46708 * 321.86614 * 19 7 5 36 36 H 1.08990 * 113.46857 * 92.30869 * 19 7 5 37 37 H 1.08003 * 120.41510 * 359.97438 * 21 20 2 38 38 H 1.08005 * 119.61248 * 180.24591 * 22 21 20 39 39 H 1.08003 * 119.61973 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.42154 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6414 0.0570 2.4766 6 8 1.0110 1.0869 2.3633 7 7 1.9845 -0.3919 3.7002 8 6 2.7102 -1.5529 4.2371 9 6 3.0826 -0.6867 5.4516 10 8 4.2738 0.0845 5.2835 11 6 3.0241 -1.4123 6.7712 12 1 2.1247 -1.3758 7.3681 13 6 4.1185 -2.1229 7.2163 14 7 5.2138 -2.1671 6.4896 15 14 4.0458 -3.0228 8.8516 16 1 3.5485 -4.4051 8.6343 17 1 5.4042 -3.0736 9.4495 18 1 3.1268 -2.3050 9.7711 19 6 1.7919 0.0600 5.0864 20 6 2.0323 -0.7105 -1.2305 21 6 1.7121 -2.0393 -1.4632 22 6 2.1868 -2.6563 -2.6052 23 7 2.9438 -1.9992 -3.4620 24 6 3.2727 -0.7367 -3.2702 25 6 2.8303 -0.0525 -2.1538 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.6054 -1.7199 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 2.0618 -2.3931 4.4857 32 1 3.5680 -1.8464 3.6320 33 1 5.0848 -0.3889 5.5144 34 1 5.9839 -2.6666 6.8029 35 1 1.8673 1.1410 5.2050 36 1 0.9018 -0.3553 5.5586 37 1 1.0966 -2.5842 -0.7627 38 1 1.9386 -3.6900 -2.7958 39 1 3.8951 -0.2314 -3.9939 40 1 3.1027 0.9816 -2.0026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328924279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:23 Heat of formation + Delta-G solvation = -39.045103 kcal Electronic energy + Delta-G solvation = -22717.481273 eV Core-core repulsion = 19304.517758 eV Total energy + Delta-G solvation = -3412.963516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.53335 -41.00489 -39.35687 -36.61442 -35.86621 -34.12407 -32.25677 -31.96454 -30.81908 -28.69959 -26.91525 -26.73365 -25.14890 -24.31513 -22.24361 -21.27963 -19.86030 -19.25476 -18.24133 -17.49293 -17.19194 -17.10034 -16.64195 -16.43179 -16.39810 -15.94731 -15.24673 -15.10530 -14.81802 -14.54866 -14.33969 -14.28365 -13.89535 -13.84502 -13.41684 -13.36710 -12.77493 -12.75577 -12.73967 -12.46545 -12.34035 -12.23720 -12.14550 -11.80979 -11.34559 -10.89681 -10.64769 -10.48572 -10.39776 -10.19880 -10.05440 -9.56238 -8.27633 -6.44684 0.23345 0.28674 1.47133 1.51033 1.59736 1.64319 1.97814 2.40913 2.88780 2.94756 3.34173 3.62182 3.64860 3.71038 3.88590 3.96885 4.12311 4.16630 4.22112 4.25005 4.37487 4.48031 4.60081 4.62232 4.69059 4.75933 4.79651 4.88782 4.92380 4.93101 4.96227 5.05671 5.13701 5.24961 5.35166 5.49358 5.72919 5.80467 5.91216 6.61378 6.90881 7.05052 7.16198 7.29830 7.48546 8.78393 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023173 B = 0.003440 C = 0.003214 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.014072 B = 8138.025669 C = 8710.601921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.029 4.029 3 H 0.076 0.924 4 C -0.115 4.115 5 C 0.530 3.470 6 O -0.587 6.587 7 N -0.638 5.638 8 C 0.086 3.914 9 C 0.217 3.783 10 O -0.587 6.587 11 C -0.553 4.553 12 H 0.074 0.926 13 C 0.033 3.967 14 N -0.918 5.918 15 Si 0.970 3.030 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.271 1.271 19 C 0.106 3.894 20 C -0.037 4.037 21 C -0.169 4.169 22 C 0.091 3.909 23 N -0.516 5.516 24 C 0.091 3.909 25 C -0.176 4.176 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.389 0.611 34 H 0.276 0.724 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.177 0.823 39 H 0.176 0.824 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.040 -2.623 -13.434 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.048 4.048 3 H 0.095 0.905 4 C -0.155 4.155 5 C 0.322 3.678 6 O -0.469 6.469 7 N -0.371 5.371 8 C -0.037 4.037 9 C 0.175 3.825 10 O -0.400 6.400 11 C -0.591 4.591 12 H 0.092 0.908 13 C -0.168 4.168 14 N -0.559 5.559 15 Si 0.795 3.205 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.017 4.017 20 C -0.045 4.045 21 C -0.188 4.188 22 C -0.065 4.065 23 N -0.225 5.225 24 C -0.065 4.065 25 C -0.195 4.195 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.081 0.919 33 H 0.245 0.755 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.121 0.879 37 H 0.168 0.832 38 H 0.194 0.806 39 H 0.193 0.807 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.347 -2.068 -14.658 15.739 hybrid contribution 0.347 -0.214 1.870 1.914 sum -5.000 -2.283 -12.787 13.918 Atomic orbital electron populations 1.21877 0.93012 1.02561 1.02490 1.19808 0.97194 0.98592 0.89224 0.90535 1.21622 1.03187 1.00384 0.90276 1.20729 0.78127 0.85402 0.83561 1.90594 1.43122 1.26759 1.86440 1.49816 1.55155 1.27331 1.04838 1.24036 0.94527 0.90158 0.94962 1.19884 0.82745 0.87817 0.92023 1.86028 1.18587 1.44995 1.90391 1.21676 1.00968 1.31211 1.05204 0.90754 1.25757 0.94513 0.95904 1.00580 1.69321 1.04377 1.42749 1.39427 0.85365 0.77405 0.78782 0.78947 1.19542 1.21002 1.19515 1.23307 0.99134 0.99505 0.79713 1.20336 0.94648 0.94474 0.95069 1.22228 1.02017 0.94932 0.99648 1.23157 0.92613 1.00923 0.89837 1.67703 1.13284 1.09945 1.31583 1.23124 0.96926 0.90209 0.96232 1.22319 0.99158 1.02431 0.95636 0.91946 0.92426 0.91446 0.86965 0.88931 0.88597 0.91929 0.75500 0.91361 0.93090 0.87930 0.83180 0.80573 0.80669 0.83580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 8.76 71.98 0.63 -2.74 16 2 C -0.03 -0.72 2.24 -11.54 -0.03 -0.74 16 3 H 0.08 2.08 7.76 -2.39 -0.02 2.07 16 4 C -0.12 -3.17 4.75 29.85 0.14 -3.03 16 5 C 0.53 19.77 7.79 87.66 0.68 20.45 16 6 O -0.59 -24.89 14.74 -3.03 -0.04 -24.94 16 7 N -0.64 -25.55 3.69 -858.24 -3.16 -28.71 16 8 C 0.09 3.48 7.86 83.26 0.65 4.13 16 9 C 0.22 10.13 1.58 -11.11 -0.02 10.12 16 10 O -0.59 -30.27 13.55 -148.98 -2.02 -32.29 16 11 C -0.55 -26.78 8.70 25.60 0.22 -26.56 16 12 H 0.07 3.48 7.81 -2.91 -0.02 3.46 16 13 C 0.03 1.57 5.39 84.65 0.46 2.03 16 14 N -0.92 -45.28 11.01 21.45 0.24 -45.05 16 15 Si 0.97 38.27 29.54 68.60 2.03 40.29 16 16 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 17 H -0.28 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 19 C 0.11 4.52 8.02 83.18 0.67 5.19 16 20 C -0.04 -0.79 4.80 -19.67 -0.09 -0.89 16 21 C -0.17 -3.20 8.89 22.36 0.20 -3.00 16 22 C 0.09 1.74 11.18 84.68 0.95 2.69 16 23 N -0.52 -11.53 10.36 -195.84 -2.03 -13.56 16 24 C 0.09 1.80 11.18 84.68 0.95 2.74 16 25 C -0.18 -3.52 9.76 22.36 0.22 -3.30 16 26 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.71 5.95 -2.39 -0.01 1.69 16 28 H 0.07 1.35 7.50 -2.38 -0.02 1.33 16 29 H 0.11 2.60 7.65 -2.39 -0.02 2.58 16 30 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.10 3.57 8.10 -2.39 -0.02 3.55 16 32 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 33 H 0.39 20.34 6.32 -74.06 -0.47 19.87 16 34 H 0.28 12.93 8.31 -92.71 -0.77 12.16 16 35 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 36 H 0.10 3.92 8.10 -2.39 -0.02 3.90 16 37 H 0.15 2.28 7.35 -2.91 -0.02 2.25 16 38 H 0.18 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.15 2.47 8.01 -2.91 -0.02 2.45 16 Total: -1.00 -59.64 336.66 1.22 -58.42 By element: Atomic # 1 Polarization: 38.17 SS G_CDS: 0.58 Total: 38.76 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.63 Total: 7.08 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -4.96 Total: -87.32 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -2.06 Total: -57.23 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.29 kcal Total: -59.64 1.22 -58.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328924279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.380 kcal (2) G-P(sol) polarization free energy of solvation -59.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds