Wall clock time and date at job start Tue Mar 31 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 112.74258 * 2 1 4 4 C 1.53619 * 113.41406 * 229.17384 * 2 1 3 5 5 C 1.53504 * 83.30299 * 271.24345 * 4 2 1 6 6 N 1.47067 * 113.46943 * 130.74122 * 2 1 3 7 7 C 1.34779 * 136.05898 * 267.69664 * 6 2 1 8 8 O 1.21577 * 119.99836 * 359.94537 * 7 6 2 9 9 N 1.34770 * 119.99877 * 179.97438 * 7 6 2 10 10 C 1.46507 * 119.99906 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47133 * 180.02562 * 10 9 7 12 12 C 1.38325 * 119.96960 * 89.99608 * 11 10 9 13 13 C 1.38277 * 120.14200 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.06490 * 0.02728 * 13 12 11 15 15 C 1.38857 * 119.93407 * 359.97438 * 14 13 12 16 16 O 1.35749 * 120.06718 * 180.02562 * 15 14 13 17 17 C 1.34826 * 117.00388 * 354.46008 * 16 15 14 18 18 H 1.08003 * 119.99700 * 5.06143 * 17 16 15 19 19 C 1.38650 * 120.00542 * 185.05649 * 17 16 15 20 20 N 1.31562 * 119.99350 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00418 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47351 * 60.00380 * 21 19 17 23 23 H 1.48500 * 109.47232 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47346 * 300.00527 * 21 19 17 25 25 C 1.38077 * 119.96530 * 269.72620 * 11 10 9 26 26 H 1.09013 * 109.46887 * 308.76529 * 1 2 3 27 27 H 1.09000 * 109.47078 * 68.76051 * 1 2 3 28 28 H 1.08996 * 109.47210 * 188.76441 * 1 2 3 29 29 H 1.08993 * 114.20547 * 157.67251 * 4 2 1 30 30 H 1.08997 * 114.23322 * 24.81164 * 4 2 1 31 31 H 1.08995 * 113.46546 * 219.17100 * 5 4 2 32 32 H 1.08999 * 113.47033 * 88.78921 * 5 4 2 33 33 H 0.97003 * 120.00357 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.46696 * 299.99824 * 10 9 7 35 35 H 1.08992 * 109.46963 * 59.99730 * 10 9 7 36 36 H 1.08005 * 119.92505 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.96617 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.03158 * 179.97438 * 14 13 12 39 39 H 0.97008 * 119.99702 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.03135 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9513 1.0052 0.0000 4 6 2.1404 -0.9216 -1.0667 5 6 2.0389 -1.9762 0.0441 6 7 2.1157 -0.8804 1.0221 7 6 2.5367 -0.7436 2.2951 8 8 2.4644 0.3376 2.8464 9 7 3.0382 -1.8052 2.9568 10 6 3.4953 -1.6566 4.3407 11 6 4.0073 -2.9810 4.8456 12 6 5.3404 -3.3133 4.6848 13 6 5.8140 -4.5273 5.1471 14 6 4.9566 -5.4125 5.7708 15 6 3.6178 -5.0819 5.9339 16 8 2.7728 -5.9496 6.5469 17 6 3.2684 -7.1608 6.8714 18 1 4.3157 -7.3747 6.7169 19 6 2.4337 -8.1316 7.4035 20 7 1.1579 -7.8711 7.5913 21 14 3.1205 -9.8093 7.8537 22 1 4.1841 -9.6503 8.8778 23 1 2.0319 -10.6601 8.3980 24 1 3.6916 -10.4517 6.6427 25 6 3.1463 -3.8593 5.4733 26 1 -0.3633 0.6435 0.8014 27 1 -0.3633 0.3723 -0.9579 28 1 -0.3633 -1.0156 0.1566 29 1 3.1618 -0.6650 -1.3474 30 1 1.4903 -1.1088 -1.9213 31 1 2.8937 -2.6514 0.0809 32 1 1.0849 -2.5031 0.0566 33 1 3.0959 -2.6678 2.5169 34 1 4.2963 -0.9184 4.3815 35 1 2.6646 -1.3261 4.9642 36 1 6.0126 -2.6229 4.1969 37 1 6.8553 -4.7840 5.0196 38 1 5.3270 -6.3607 6.1314 39 1 0.5738 -8.5504 7.9632 40 1 2.1066 -3.5972 5.6029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331897109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:12 Heat of formation + Delta-G solvation = 6.791260 kcal Electronic energy + Delta-G solvation = -22114.121576 eV Core-core repulsion = 18703.145675 eV Total energy + Delta-G solvation = -3410.975902 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.69425 -39.23095 -38.29973 -36.73366 -34.37922 -32.34878 -31.37877 -30.08147 -29.20232 -28.83092 -25.84793 -25.03748 -24.43531 -22.02882 -21.67684 -20.78495 -19.30697 -17.96828 -17.52836 -16.97374 -16.53841 -16.04042 -15.29972 -14.95466 -14.68693 -14.42629 -14.34859 -14.06310 -13.69000 -13.50823 -12.98118 -12.82109 -12.70806 -12.65987 -12.38310 -12.14756 -12.10546 -11.69211 -11.55651 -11.38511 -10.93678 -10.82683 -10.70902 -10.67393 -10.49474 -10.08991 -9.42207 -9.08783 -8.89856 -8.59186 -8.25498 -7.33501 -6.49915 -4.09596 1.84247 2.25989 2.57972 3.09803 3.10511 3.13700 3.27881 3.89865 3.92984 4.10619 4.52447 4.63818 4.83098 4.92156 4.93669 4.99113 5.06753 5.21192 5.27364 5.32685 5.42186 5.53171 5.63042 5.70709 5.72261 5.77659 5.85376 5.96694 6.01493 6.07528 6.25155 6.55384 6.60618 6.81565 6.98362 7.19283 7.22623 7.27887 7.35202 7.70467 7.94089 8.07905 8.67251 8.95233 9.64105 10.67775 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.003073 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.613408 B = 9108.638678 C = 9651.948187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.149 3.851 3 H 0.085 0.915 4 C -0.151 4.151 5 C 0.098 3.902 6 N -0.665 5.665 7 C 0.733 3.267 8 O -0.593 6.593 9 N -0.733 5.733 10 C 0.187 3.813 11 C -0.072 4.072 12 C -0.194 4.194 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.150 3.850 16 O -0.176 6.176 17 C -0.394 4.394 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.278 1.278 24 H -0.270 1.270 25 C -0.170 4.170 26 H 0.064 0.936 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.398 0.602 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.128 0.872 39 H 0.271 0.729 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 9.282 -15.859 18.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.189 4.189 5 C -0.026 4.026 6 N -0.406 5.406 7 C 0.437 3.563 8 O -0.472 6.472 9 N -0.388 5.388 10 C 0.064 3.936 11 C -0.073 4.073 12 C -0.214 4.214 13 C -0.095 4.095 14 C -0.245 4.245 15 C 0.097 3.903 16 O -0.080 6.080 17 C -0.470 4.470 18 H 0.109 0.891 19 C -0.164 4.164 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.195 1.195 23 H -0.202 1.202 24 H -0.195 1.195 25 C -0.190 4.190 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.232 0.768 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.262 10.003 -14.992 18.165 hybrid contribution 0.407 -1.447 0.175 1.514 sum 2.669 8.556 -14.818 17.317 Atomic orbital electron populations 1.22019 0.93991 1.02949 1.02672 1.22286 0.93922 0.96219 0.83139 0.89708 1.23457 1.02435 0.96723 0.96284 1.22951 1.02189 0.92007 0.85434 1.48863 1.66239 1.14551 1.10924 1.15300 0.78063 0.84367 0.78620 1.90905 1.63338 1.26300 1.66637 1.45203 1.67583 1.11321 1.14656 1.20010 0.99006 0.94380 0.80206 1.19282 0.93767 0.94557 0.99708 1.20484 0.94820 0.98257 1.07801 1.20743 0.98344 0.93567 0.96806 1.21238 0.93767 1.02049 1.07488 1.19320 0.89595 0.90610 0.90822 1.83982 1.36217 1.23170 1.64586 1.21277 0.95575 0.86925 1.43235 0.89093 1.25295 0.95124 0.99400 0.96629 1.70034 1.03797 1.34835 1.40920 0.85777 0.78441 0.80067 0.79130 1.19463 1.20238 1.19484 1.20095 0.99721 0.93704 1.05455 0.91734 0.90889 0.91887 0.88757 0.89175 0.90608 0.89855 0.76804 0.91137 0.91053 0.87505 0.87277 0.85462 0.91897 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.79 37.16 0.36 -0.89 16 2 C 0.15 1.37 4.95 -72.33 -0.36 1.01 16 3 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.15 -0.95 8.09 -26.15 -0.21 -1.17 16 5 C 0.10 0.80 7.91 -8.49 -0.07 0.73 16 6 N -0.67 -8.03 3.50 -182.98 -0.64 -8.67 16 7 C 0.73 11.61 8.79 -86.92 -0.76 10.85 16 8 O -0.59 -11.62 17.12 5.30 0.09 -11.53 16 9 N -0.73 -10.80 5.55 -66.41 -0.37 -11.17 16 10 C 0.19 2.95 5.80 -5.19 -0.03 2.92 16 11 C -0.07 -1.26 5.25 -104.65 -0.55 -1.81 16 12 C -0.19 -3.23 9.70 -39.54 -0.38 -3.62 16 13 C -0.08 -1.34 10.04 -39.61 -0.40 -1.74 16 14 C -0.23 -4.74 9.17 -39.39 -0.36 -5.10 16 15 C 0.15 3.53 6.65 -39.11 -0.26 3.27 16 16 O -0.18 -4.94 9.76 0.06 0.00 -4.94 16 17 C -0.39 -10.80 9.49 30.88 0.29 -10.51 16 18 H 0.09 2.29 5.20 -52.48 -0.27 2.02 16 19 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 20 N -0.86 -24.95 13.67 55.48 0.76 -24.19 16 21 Si 0.94 20.14 29.55 -169.99 -5.02 15.11 16 22 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.17 -3.50 9.64 -39.40 -0.38 -3.88 16 26 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.50 7.04 -51.93 -0.37 0.14 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.38 8.11 -51.93 -0.42 -0.04 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.61 7.30 -51.93 -0.38 0.23 16 33 H 0.40 5.33 8.18 -40.82 -0.33 5.00 16 34 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 35 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 36 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 37 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.13 2.67 5.64 -52.48 -0.30 2.37 16 39 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.12 2.42 8.06 -52.48 -0.42 1.99 16 LS Contribution 342.05 15.07 5.15 5.15 Total: -1.00 -33.09 342.05 -8.65 -41.75 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.43 Total: 7.42 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -3.20 Total: -8.93 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.25 Total: -44.03 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: 0.09 Total: -16.47 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.09 -8.65 -41.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331897109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.539 kcal (2) G-P(sol) polarization free energy of solvation -33.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds