Wall clock time and date at job start Tue Mar 31 2020 06:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 112.74258 * 2 1 4 4 C 1.53619 * 113.41406 * 229.17384 * 2 1 3 5 5 C 1.53504 * 83.30299 * 271.24345 * 4 2 1 6 6 N 1.47067 * 113.46943 * 130.74122 * 2 1 3 7 7 C 1.34779 * 136.05898 * 267.69664 * 6 2 1 8 8 O 1.21577 * 119.99836 * 359.94537 * 7 6 2 9 9 N 1.34770 * 119.99877 * 179.97438 * 7 6 2 10 10 C 1.46507 * 119.99906 * 180.02562 * 9 7 6 11 11 C 1.50701 * 109.47133 * 180.02562 * 10 9 7 12 12 C 1.38325 * 119.96960 * 89.99608 * 11 10 9 13 13 C 1.38277 * 120.14200 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.06490 * 0.02728 * 13 12 11 15 15 C 1.38857 * 119.93407 * 359.97438 * 14 13 12 16 16 O 1.35749 * 120.06718 * 180.02562 * 15 14 13 17 17 C 1.34826 * 117.00388 * 354.46008 * 16 15 14 18 18 H 1.08003 * 119.99700 * 5.06143 * 17 16 15 19 19 C 1.38650 * 120.00542 * 185.05649 * 17 16 15 20 20 N 1.31562 * 119.99350 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 120.00418 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47351 * 60.00380 * 21 19 17 23 23 H 1.48500 * 109.47232 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47346 * 300.00527 * 21 19 17 25 25 C 1.38077 * 119.96530 * 269.72620 * 11 10 9 26 26 H 1.09013 * 109.46887 * 308.76529 * 1 2 3 27 27 H 1.09000 * 109.47078 * 68.76051 * 1 2 3 28 28 H 1.08996 * 109.47210 * 188.76441 * 1 2 3 29 29 H 1.08993 * 114.20547 * 157.67251 * 4 2 1 30 30 H 1.08997 * 114.23322 * 24.81164 * 4 2 1 31 31 H 1.08995 * 113.46546 * 219.17100 * 5 4 2 32 32 H 1.08999 * 113.47033 * 88.78921 * 5 4 2 33 33 H 0.97003 * 120.00357 * 359.97438 * 9 7 6 34 34 H 1.09003 * 109.46696 * 299.99824 * 10 9 7 35 35 H 1.08992 * 109.46963 * 59.99730 * 10 9 7 36 36 H 1.08005 * 119.92505 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.96617 * 179.97438 * 13 12 11 38 38 H 1.08003 * 120.03158 * 179.97438 * 14 13 12 39 39 H 0.97008 * 119.99702 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.03135 * 359.97438 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9513 1.0052 0.0000 4 6 2.1404 -0.9216 -1.0667 5 6 2.0389 -1.9762 0.0441 6 7 2.1157 -0.8804 1.0221 7 6 2.5367 -0.7436 2.2951 8 8 2.4644 0.3376 2.8464 9 7 3.0382 -1.8052 2.9568 10 6 3.4953 -1.6566 4.3407 11 6 4.0073 -2.9810 4.8456 12 6 5.3404 -3.3133 4.6848 13 6 5.8140 -4.5273 5.1471 14 6 4.9566 -5.4125 5.7708 15 6 3.6178 -5.0819 5.9339 16 8 2.7728 -5.9496 6.5469 17 6 3.2684 -7.1608 6.8714 18 1 4.3157 -7.3747 6.7169 19 6 2.4337 -8.1316 7.4035 20 7 1.1579 -7.8711 7.5913 21 14 3.1205 -9.8093 7.8537 22 1 4.1841 -9.6503 8.8778 23 1 2.0319 -10.6601 8.3980 24 1 3.6916 -10.4517 6.6427 25 6 3.1463 -3.8593 5.4733 26 1 -0.3633 0.6435 0.8014 27 1 -0.3633 0.3723 -0.9579 28 1 -0.3633 -1.0156 0.1566 29 1 3.1618 -0.6650 -1.3474 30 1 1.4903 -1.1088 -1.9213 31 1 2.8937 -2.6514 0.0809 32 1 1.0849 -2.5031 0.0566 33 1 3.0959 -2.6678 2.5169 34 1 4.2963 -0.9184 4.3815 35 1 2.6646 -1.3261 4.9642 36 1 6.0126 -2.6229 4.1969 37 1 6.8553 -4.7840 5.0196 38 1 5.3270 -6.3607 6.1314 39 1 0.5738 -8.5504 7.9632 40 1 2.1066 -3.5972 5.6029 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331897109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:12 Heat of formation + Delta-G solvation = -15.360904 kcal Electronic energy + Delta-G solvation = -22115.082166 eV Core-core repulsion = 18703.145675 eV Total energy + Delta-G solvation = -3411.936492 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63785 -40.85082 -39.48144 -38.38267 -35.75059 -34.29629 -32.64438 -31.25116 -30.62492 -29.71001 -27.53925 -26.63884 -25.11073 -23.31868 -22.99517 -22.33790 -20.45969 -19.48806 -18.87481 -18.46234 -17.52288 -17.10911 -16.80296 -16.47267 -16.15668 -15.91424 -15.60969 -15.43497 -15.04788 -14.96625 -14.34801 -14.01883 -13.81801 -13.64665 -13.45206 -13.36491 -13.26544 -13.03380 -12.84521 -12.54688 -12.37822 -12.29233 -12.18355 -12.14137 -11.37673 -11.32603 -11.21400 -10.80876 -10.32426 -9.79729 -9.55486 -9.05506 -8.47492 -6.16474 0.33262 0.68479 1.35641 1.45160 1.51822 1.54014 2.09092 2.17482 2.74415 2.98272 3.20137 3.36301 3.43849 3.79034 4.00097 4.07344 4.17851 4.23921 4.28184 4.33151 4.39127 4.50641 4.57860 4.59408 4.69693 4.72435 4.92367 4.97066 4.99862 5.06593 5.10538 5.14268 5.23180 5.37197 5.40061 5.60311 5.68569 5.69825 6.00455 6.14018 6.21511 6.96959 6.99152 7.49740 7.76916 8.75423 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021540 B = 0.003073 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.613408 B = 9108.638678 C = 9651.948187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.134 3.866 3 H 0.074 0.926 4 C -0.125 4.125 5 C 0.091 3.909 6 N -0.674 5.674 7 C 0.725 3.275 8 O -0.640 6.640 9 N -0.728 5.728 10 C 0.194 3.806 11 C -0.059 4.059 12 C -0.168 4.168 13 C -0.068 4.068 14 C -0.233 4.233 15 C 0.114 3.886 16 O -0.232 6.232 17 C -0.414 4.414 18 H 0.105 0.895 19 C -0.023 4.023 20 N -0.921 5.921 21 Si 1.019 2.981 22 H -0.257 1.257 23 H -0.274 1.274 24 H -0.255 1.255 25 C -0.181 4.181 26 H 0.040 0.960 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.405 0.595 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.147 0.853 37 H 0.151 0.849 38 H 0.123 0.877 39 H 0.272 0.728 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.159 9.324 -18.502 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.031 3.969 3 H 0.092 0.908 4 C -0.162 4.162 5 C -0.031 4.031 6 N -0.413 5.413 7 C 0.428 3.572 8 O -0.522 6.522 9 N -0.383 5.383 10 C 0.070 3.930 11 C -0.059 4.059 12 C -0.187 4.187 13 C -0.085 4.085 14 C -0.252 4.252 15 C 0.064 3.936 16 O -0.139 6.139 17 C -0.490 4.490 18 H 0.122 0.878 19 C -0.220 4.220 20 N -0.559 5.559 21 Si 0.838 3.162 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.179 1.179 25 C -0.201 4.201 26 H 0.059 0.941 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.241 0.759 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.165 0.835 37 H 0.169 0.831 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.767 10.062 -17.714 20.923 hybrid contribution -0.245 -1.158 0.789 1.422 sum 4.522 8.904 -16.925 19.652 Atomic orbital electron populations 1.21996 0.93068 1.02581 1.03452 1.22644 0.94749 0.96163 0.83345 0.90815 1.23402 1.03172 0.93797 0.95870 1.23258 1.03186 0.91953 0.84669 1.49120 1.65105 1.17096 1.09971 1.15517 0.78207 0.83739 0.79726 1.90861 1.65238 1.27961 1.68188 1.45022 1.67570 1.11556 1.14115 1.19870 0.98967 0.93393 0.80743 1.19411 0.93944 0.94296 0.98269 1.20982 0.94518 0.98097 1.05055 1.21166 0.99761 0.92780 0.94839 1.21387 0.93147 1.02772 1.07920 1.19822 0.90683 0.91040 0.92104 1.83949 1.38217 1.24215 1.67515 1.21807 0.96427 0.87353 1.43450 0.87815 1.26603 0.95343 1.03746 0.96337 1.70191 1.05642 1.36529 1.43584 0.84646 0.77904 0.74276 0.79403 1.18157 1.19844 1.17940 1.20197 0.99925 0.93699 1.06315 0.94107 0.87896 0.91839 0.88133 0.85991 0.89738 0.88808 0.75949 0.89846 0.92417 0.83536 0.83121 0.85926 0.91860 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.79 71.98 0.70 -1.49 16 2 C 0.13 2.25 4.95 41.83 0.21 2.46 16 3 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.12 -1.14 8.09 30.97 0.25 -0.89 16 5 C 0.09 1.26 7.91 83.18 0.66 1.91 16 6 N -0.67 -15.41 3.50 -851.09 -2.98 -18.39 16 7 C 0.72 22.62 8.79 179.06 1.57 24.19 16 8 O -0.64 -25.37 17.12 -3.96 -0.07 -25.44 16 9 N -0.73 -20.65 5.55 -482.30 -2.68 -23.33 16 10 C 0.19 5.90 5.80 85.63 0.50 6.40 16 11 C -0.06 -1.95 5.25 -19.88 -0.10 -2.05 16 12 C -0.17 -4.91 9.70 22.30 0.22 -4.69 16 13 C -0.07 -2.13 10.04 22.25 0.22 -1.91 16 14 C -0.23 -9.61 9.17 22.39 0.21 -9.40 16 15 C 0.11 5.52 6.65 22.58 0.15 5.67 16 16 O -0.23 -13.81 9.76 -22.69 -0.22 -14.03 16 17 C -0.41 -23.69 9.49 67.92 0.64 -23.04 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 19 C -0.02 -1.28 5.49 84.83 0.47 -0.81 16 20 N -0.92 -56.28 13.67 21.61 0.30 -55.99 16 21 Si 1.02 42.03 29.55 68.60 2.03 44.06 16 22 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 23 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 25 C -0.18 -7.66 9.64 22.39 0.22 -7.44 16 26 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.91 7.04 -2.39 -0.02 0.89 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.12 0.43 8.11 -2.39 -0.02 0.41 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.13 7.30 -2.39 -0.02 1.11 16 33 H 0.41 10.22 8.18 -92.71 -0.76 9.46 16 34 H 0.08 2.37 8.08 -2.39 -0.02 2.35 16 35 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 36 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 37 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 39 H 0.27 15.29 8.31 -92.70 -0.77 14.51 16 40 H 0.10 4.59 8.06 -2.91 -0.02 4.56 16 Total: -1.00 -78.08 342.05 2.59 -75.49 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.30 Total: 28.72 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 5.91 Total: -11.10 kcal Atomic # 7 Polarization: -92.34 SS G_CDS: -5.36 Total: -97.70 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.29 Total: -39.47 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -78.08 2.59 -75.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331897109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.131 kcal (2) G-P(sol) polarization free energy of solvation -78.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds