Wall clock time and date at job start Tue Mar 31 2020 06:40:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00132 * 2 1 4 4 O 1.21284 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00390 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47144 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47558 * 55.00309 * 6 5 3 8 8 C 1.53006 * 109.46658 * 175.00039 * 6 5 3 9 9 N 1.46493 * 109.47119 * 294.99797 * 6 5 3 10 10 C 1.34781 * 119.99834 * 155.00342 * 9 6 5 11 11 O 1.21583 * 119.99913 * 359.97438 * 10 9 6 12 12 C 1.47640 * 120.00069 * 180.02562 * 10 9 6 13 13 C 1.40019 * 119.89413 * 359.72729 * 12 10 9 14 14 C 1.36319 * 120.10527 * 179.71955 * 13 12 10 15 15 C 1.40888 * 119.89082 * 0.57240 * 14 13 12 16 16 C 1.41110 * 120.10271 * 179.67521 * 15 14 13 17 17 H 1.07997 * 119.99952 * 204.64364 * 16 15 14 18 18 C 1.40229 * 120.00059 * 24.64952 * 16 15 14 19 19 N 1.30653 * 119.99596 * 17.87506 * 18 16 15 20 20 Si 1.86798 * 120.00142 * 197.87297 * 18 16 15 21 21 H 1.48497 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46853 * 120.00314 * 20 18 16 23 23 H 1.48507 * 109.47066 * 239.99916 * 20 18 16 24 24 C 1.40884 * 119.79409 * 359.70086 * 15 14 13 25 25 C 1.36324 * 119.89439 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47186 * 300.00549 * 1 2 3 27 27 H 1.08999 * 109.46804 * 60.00379 * 1 2 3 28 28 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99870 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46884 * 59.99436 * 5 3 2 31 31 H 1.08999 * 109.46884 * 299.99881 * 5 3 2 32 32 H 1.09001 * 109.47403 * 60.00083 * 8 6 5 33 33 H 1.09001 * 109.47266 * 299.99753 * 8 6 5 34 34 H 1.09003 * 109.46786 * 179.97438 * 8 6 5 35 35 H 0.97003 * 120.00142 * 335.00012 * 9 6 5 36 36 H 1.07996 * 119.94850 * 359.97438 * 13 12 10 37 37 H 1.08002 * 120.05259 * 180.24949 * 14 13 12 38 38 H 0.97000 * 119.99550 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.05480 * 179.97438 * 24 15 14 40 40 H 1.07991 * 119.94579 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1558 2.6097 -0.0002 7 1 3.7209 3.1494 0.8411 8 6 5.6807 2.6116 0.1261 9 7 3.7688 3.2638 -1.2525 10 6 3.6420 4.6047 -1.3013 11 8 3.8484 5.2714 -0.3057 12 6 3.2514 5.2639 -2.5633 13 6 3.0187 4.4944 -3.7096 14 6 2.6523 5.0981 -4.8757 15 6 2.5195 6.4997 -4.9291 16 6 2.1471 7.1298 -6.1356 17 1 2.4179 8.1602 -6.3126 18 6 1.4254 6.4181 -7.1046 19 7 0.7996 5.3191 -6.7766 20 14 1.3587 7.0413 -8.8643 21 1 2.1436 8.2970 -8.9748 22 1 1.9315 6.0171 -9.7742 23 1 -0.0529 7.3056 -9.2426 24 6 2.7603 7.2702 -3.7745 25 6 3.1198 6.6570 -2.6113 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9499 -0.8400 0.0004 30 1 4.0096 0.6531 -0.8891 31 1 4.0089 0.6536 0.8908 32 1 6.1156 2.0720 -0.7152 33 1 5.9687 2.1249 1.0580 34 1 6.0440 3.6392 0.1251 35 1 3.6038 2.7318 -2.0467 36 1 3.1257 3.4205 -3.6690 37 1 2.4691 4.5033 -5.7584 38 1 0.3001 4.8270 -7.4468 39 1 2.6601 8.3449 -3.8109 40 1 3.3041 7.2468 -1.7256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001460150532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:12 Heat of formation + Delta-G solvation = -67.575880 kcal Electronic energy + Delta-G solvation = -22615.299373 eV Core-core repulsion = 19201.098670 eV Total energy + Delta-G solvation = -3414.200703 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.93836 -38.78611 -37.10318 -35.30785 -34.53117 -33.78463 -31.51884 -29.77538 -29.34458 -28.68513 -26.09841 -25.74928 -22.48071 -21.22005 -20.81958 -20.22083 -19.54167 -17.47618 -17.42287 -16.69194 -16.12911 -15.73368 -15.36308 -14.99730 -14.22314 -14.04325 -13.85964 -13.64850 -13.27441 -13.09952 -12.86203 -12.72385 -12.41096 -12.26564 -12.03078 -11.98515 -11.78537 -11.71665 -11.28829 -11.20816 -10.95845 -10.81940 -10.56232 -9.95810 -9.83262 -9.49041 -9.28078 -9.21312 -8.80194 -8.43308 -7.63097 -7.45018 -6.96456 -4.52565 2.34125 2.66585 2.95321 2.98471 3.04404 3.11708 3.12081 3.79148 3.89169 4.01167 4.60035 4.69991 4.72336 5.07077 5.13528 5.34581 5.40529 5.51479 5.57497 5.67587 5.70550 5.77336 6.01182 6.13036 6.27738 6.31335 6.39929 6.41786 6.84236 6.89969 7.07824 7.19370 7.22132 7.36374 7.51854 7.74600 7.88466 7.94083 8.15116 8.23144 8.39488 8.47741 8.70932 8.83663 9.26274 9.95784 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.003890 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.770963 B = 7195.826320 C = 8192.272021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.743 5.743 3 C 0.502 3.498 4 O -0.511 6.511 5 C -0.149 4.149 6 C 0.160 3.840 7 H 0.091 0.909 8 C -0.162 4.162 9 N -0.727 5.727 10 C 0.580 3.420 11 O -0.576 6.576 12 C -0.278 4.278 13 C -0.061 4.061 14 C -0.179 4.179 15 C 0.128 3.872 16 C -0.446 4.446 17 H 0.084 0.916 18 C 0.075 3.925 19 N -0.774 5.774 20 Si 0.912 3.088 21 H -0.257 1.257 22 H -0.270 1.270 23 H -0.272 1.272 24 C -0.238 4.238 25 C -0.023 4.023 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.072 0.928 29 H 0.399 0.601 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.392 0.608 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.285 0.715 39 H 0.097 0.903 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.145 -14.325 6.770 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.396 5.396 3 C 0.287 3.713 4 O -0.384 6.384 5 C -0.190 4.190 6 C 0.054 3.946 7 H 0.109 0.891 8 C -0.220 4.220 9 N -0.379 5.379 10 C 0.374 3.626 11 O -0.458 6.458 12 C -0.282 4.282 13 C -0.081 4.081 14 C -0.198 4.198 15 C 0.125 3.875 16 C -0.474 4.474 17 H 0.102 0.898 18 C -0.146 4.146 19 N -0.398 5.398 20 Si 0.736 3.264 21 H -0.181 1.181 22 H -0.195 1.195 23 H -0.197 1.197 24 C -0.258 4.258 25 C -0.043 4.043 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.227 0.773 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.657 -13.249 7.392 15.402 hybrid contribution -0.153 -0.739 -1.216 1.431 sum 2.503 -13.988 6.175 15.494 Atomic orbital electron populations 1.21505 0.79795 1.01832 1.02549 1.45840 1.07712 1.08652 1.77433 1.20764 0.90350 0.83720 0.76427 1.90843 1.70069 1.30843 1.46662 1.22057 0.92296 0.99709 1.04929 1.20483 0.94017 0.90231 0.89915 0.89104 1.22201 0.95485 1.03124 1.01228 1.45758 1.72717 1.07586 1.11857 1.18440 0.74731 0.80843 0.88575 1.90607 1.53496 1.64370 1.37322 1.18949 1.22152 0.94049 0.93044 1.20450 0.97877 0.96469 0.93267 1.20957 1.06226 0.95330 0.97289 1.17774 0.86049 0.92045 0.91638 1.19848 1.28862 0.99259 0.99406 0.89770 1.26085 0.93007 0.94089 1.01413 1.69772 1.20292 1.13767 1.35951 0.86194 0.79020 0.80284 0.80949 1.18084 1.19456 1.19733 1.20711 1.13554 0.98342 0.93195 1.20366 0.94300 0.92910 0.96691 0.92395 0.92064 0.90962 0.76839 0.88506 0.87795 0.92602 0.92175 0.91470 0.77322 0.89590 0.86305 0.90428 0.88455 0.88141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 10.70 59.85 0.64 1.44 16 2 N -0.74 -6.86 5.71 -67.08 -0.38 -7.25 16 3 C 0.50 6.53 7.69 -10.99 -0.08 6.44 16 4 O -0.51 -9.65 15.35 5.55 0.09 -9.57 16 5 C -0.15 -1.48 5.24 -27.88 -0.15 -1.63 16 6 C 0.16 2.30 2.13 -67.93 -0.15 2.16 16 7 H 0.09 1.60 7.39 -51.93 -0.38 1.21 16 8 C -0.16 -1.97 9.48 37.16 0.35 -1.62 16 9 N -0.73 -13.01 4.17 -54.82 -0.23 -13.24 16 10 C 0.58 13.23 7.73 -12.42 -0.10 13.13 16 11 O -0.58 -14.57 15.98 5.29 0.08 -14.48 16 12 C -0.28 -6.76 5.89 -104.73 -0.62 -7.38 16 13 C -0.06 -1.44 9.47 -39.61 -0.38 -1.82 16 14 C -0.18 -4.56 8.63 -39.27 -0.34 -4.90 16 15 C 0.13 3.39 5.58 -106.80 -0.60 2.80 16 16 C -0.45 -11.47 9.04 -37.75 -0.34 -11.81 16 17 H 0.08 2.07 7.91 -52.49 -0.42 1.66 16 18 C 0.07 1.80 5.14 -17.31 -0.09 1.71 16 19 N -0.77 -19.18 10.95 55.56 0.61 -18.57 16 20 Si 0.91 17.72 29.60 -169.99 -5.03 12.69 16 21 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 24 C -0.24 -6.05 9.73 -39.27 -0.38 -6.43 16 25 C -0.02 -0.59 9.52 -39.61 -0.38 -0.96 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.40 2.17 8.83 -40.82 -0.36 1.81 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.39 6.43 6.60 -40.82 -0.27 6.16 16 36 H 0.09 1.73 6.37 -52.49 -0.33 1.40 16 37 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 38 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 39 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.10 2.43 7.63 -52.49 -0.40 2.03 16 LS Contribution 341.46 15.07 5.15 5.15 Total: -1.00 -33.75 341.46 -7.74 -41.49 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -5.43 Total: 12.65 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -2.60 Total: -8.87 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.00 Total: -39.06 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.17 Total: -24.05 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.75 -7.74 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460150532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.087 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds