Wall clock time and date at job start Tue Mar 31 2020 06:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34774 * 120.00132 * 2 1 4 4 O 1.21284 * 119.99947 * 0.02562 * 3 2 1 5 5 C 1.50703 * 120.00390 * 179.97438 * 3 2 1 6 6 C 1.52996 * 109.47144 * 179.97438 * 5 3 2 7 7 H 1.09001 * 109.47558 * 55.00309 * 6 5 3 8 8 C 1.53006 * 109.46658 * 175.00039 * 6 5 3 9 9 N 1.46493 * 109.47119 * 294.99797 * 6 5 3 10 10 C 1.34781 * 119.99834 * 155.00342 * 9 6 5 11 11 O 1.21583 * 119.99913 * 359.97438 * 10 9 6 12 12 C 1.47640 * 120.00069 * 180.02562 * 10 9 6 13 13 C 1.40019 * 119.89413 * 359.72729 * 12 10 9 14 14 C 1.36319 * 120.10527 * 179.71955 * 13 12 10 15 15 C 1.40888 * 119.89082 * 0.57240 * 14 13 12 16 16 C 1.41110 * 120.10271 * 179.67521 * 15 14 13 17 17 H 1.07997 * 119.99952 * 204.64364 * 16 15 14 18 18 C 1.40229 * 120.00059 * 24.64952 * 16 15 14 19 19 N 1.30653 * 119.99596 * 17.87506 * 18 16 15 20 20 Si 1.86798 * 120.00142 * 197.87297 * 18 16 15 21 21 H 1.48497 * 109.47150 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.46853 * 120.00314 * 20 18 16 23 23 H 1.48507 * 109.47066 * 239.99916 * 20 18 16 24 24 C 1.40884 * 119.79409 * 359.70086 * 15 14 13 25 25 C 1.36324 * 119.89439 * 359.97438 * 24 15 14 26 26 H 1.08994 * 109.47186 * 300.00549 * 1 2 3 27 27 H 1.08999 * 109.46804 * 60.00379 * 1 2 3 28 28 H 1.08998 * 109.47272 * 180.02562 * 1 2 3 29 29 H 0.96998 * 119.99870 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46884 * 59.99436 * 5 3 2 31 31 H 1.08999 * 109.46884 * 299.99881 * 5 3 2 32 32 H 1.09001 * 109.47403 * 60.00083 * 8 6 5 33 33 H 1.09001 * 109.47266 * 299.99753 * 8 6 5 34 34 H 1.09003 * 109.46786 * 179.97438 * 8 6 5 35 35 H 0.97003 * 120.00142 * 335.00012 * 9 6 5 36 36 H 1.07996 * 119.94850 * 359.97438 * 13 12 10 37 37 H 1.08002 * 120.05259 * 180.24949 * 14 13 12 38 38 H 0.97000 * 119.99550 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.05480 * 179.97438 * 24 15 14 40 40 H 1.07991 * 119.94579 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2175 0.0005 5 6 3.6459 1.1672 0.0006 6 6 4.1558 2.6097 -0.0002 7 1 3.7209 3.1494 0.8411 8 6 5.6807 2.6116 0.1261 9 7 3.7688 3.2638 -1.2525 10 6 3.6420 4.6047 -1.3013 11 8 3.8484 5.2714 -0.3057 12 6 3.2514 5.2639 -2.5633 13 6 3.0187 4.4944 -3.7096 14 6 2.6523 5.0981 -4.8757 15 6 2.5195 6.4997 -4.9291 16 6 2.1471 7.1298 -6.1356 17 1 2.4179 8.1602 -6.3126 18 6 1.4254 6.4181 -7.1046 19 7 0.7996 5.3191 -6.7766 20 14 1.3587 7.0413 -8.8643 21 1 2.1436 8.2970 -8.9748 22 1 1.9315 6.0171 -9.7742 23 1 -0.0529 7.3056 -9.2426 24 6 2.7603 7.2702 -3.7745 25 6 3.1198 6.6570 -2.6113 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9499 -0.8400 0.0004 30 1 4.0096 0.6531 -0.8891 31 1 4.0089 0.6536 0.8908 32 1 6.1156 2.0720 -0.7152 33 1 5.9687 2.1249 1.0580 34 1 6.0440 3.6392 0.1251 35 1 3.6038 2.7318 -2.0467 36 1 3.1257 3.4205 -3.6690 37 1 2.4691 4.5033 -5.7584 38 1 0.3001 4.8270 -7.4468 39 1 2.6601 8.3449 -3.8109 40 1 3.3041 7.2468 -1.7256 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001460150532.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:11 Heat of formation + Delta-G solvation = -91.831998 kcal Electronic energy + Delta-G solvation = -22616.351197 eV Core-core repulsion = 19201.098670 eV Total energy + Delta-G solvation = -3415.252527 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.16908 -40.32737 -38.92247 -36.67575 -35.66522 -35.53196 -33.06139 -31.48868 -31.26703 -29.67319 -27.67280 -26.86113 -24.13280 -22.89670 -22.35020 -21.33040 -21.21298 -19.37419 -18.62667 -18.07716 -17.50495 -17.07352 -16.69255 -16.18286 -15.76685 -15.74726 -15.39954 -15.10270 -14.85947 -14.49211 -14.10783 -13.99222 -13.87831 -13.75751 -13.30521 -13.21037 -13.10649 -12.88562 -12.82851 -12.76119 -12.62405 -12.36915 -11.94424 -11.75069 -11.38354 -11.12640 -10.91905 -10.63130 -10.11215 -9.95657 -9.58071 -9.39813 -8.79241 -6.48463 0.46341 1.13374 1.38520 1.42129 1.55579 1.69983 2.15379 2.19675 2.32082 2.48418 2.81466 3.66507 3.70217 3.88152 4.24700 4.29363 4.31186 4.41646 4.43917 4.54526 4.57880 4.66439 4.71041 4.84710 4.90323 4.95101 5.02289 5.12011 5.16528 5.29838 5.35724 5.48565 5.57707 5.74032 5.82335 5.94641 5.98841 6.21846 6.53187 6.61270 6.76301 6.78265 6.89096 7.36895 7.54216 8.16677 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017855 B = 0.003890 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.770963 B = 7195.826320 C = 8192.272021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.493 3.507 4 O -0.583 6.583 5 C -0.136 4.136 6 C 0.151 3.849 7 H 0.052 0.948 8 C -0.153 4.153 9 N -0.710 5.710 10 C 0.575 3.425 11 O -0.610 6.610 12 C -0.293 4.293 13 C -0.053 4.053 14 C -0.197 4.197 15 C 0.101 3.899 16 C -0.475 4.475 17 H 0.085 0.915 18 C 0.038 3.962 19 N -0.802 5.802 20 Si 0.990 3.010 21 H -0.257 1.257 22 H -0.258 1.258 23 H -0.264 1.264 24 C -0.253 4.253 25 C -0.037 4.037 26 H 0.043 0.957 27 H 0.036 0.964 28 H 0.114 0.886 29 H 0.422 0.578 30 H 0.133 0.867 31 H 0.149 0.851 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.030 0.970 35 H 0.401 0.599 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.297 0.703 39 H 0.104 0.896 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.858 -17.405 5.904 18.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.377 5.377 3 C 0.281 3.719 4 O -0.462 6.462 5 C -0.175 4.175 6 C 0.046 3.954 7 H 0.071 0.929 8 C -0.211 4.211 9 N -0.361 5.361 10 C 0.368 3.632 11 O -0.495 6.495 12 C -0.297 4.297 13 C -0.072 4.072 14 C -0.216 4.216 15 C 0.098 3.902 16 C -0.503 4.503 17 H 0.103 0.897 18 C -0.181 4.181 19 N -0.425 5.425 20 Si 0.810 3.190 21 H -0.180 1.180 22 H -0.182 1.182 23 H -0.189 1.189 24 C -0.272 4.272 25 C -0.056 4.056 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.133 0.867 29 H 0.259 0.741 30 H 0.151 0.849 31 H 0.167 0.833 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.049 0.951 35 H 0.237 0.763 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.108 0.892 39 H 0.122 0.878 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.390 -16.445 6.544 18.021 hybrid contribution -0.422 0.116 -0.854 0.960 sum 2.968 -16.329 5.690 17.545 Atomic orbital electron populations 1.21581 0.79799 1.03973 1.00699 1.45709 1.07864 1.08770 1.75320 1.21396 0.91752 0.83529 0.75239 1.90831 1.71594 1.33466 1.50300 1.22065 0.89846 0.96868 1.08754 1.20748 0.95653 0.92304 0.86711 0.92948 1.22126 0.93240 1.01674 1.04105 1.45655 1.70845 1.05955 1.13644 1.18311 0.74872 0.82553 0.87498 1.90577 1.55235 1.65592 1.38113 1.19286 1.21947 0.94140 0.94325 1.20679 0.96316 0.98072 0.92133 1.21002 1.07558 0.95148 0.97901 1.18132 0.86843 0.92904 0.92351 1.20129 1.30019 0.99837 1.00268 0.89666 1.26967 0.91746 0.93998 1.05395 1.69790 1.20227 1.14628 1.37885 0.85036 0.79287 0.79758 0.74963 1.17998 1.18224 1.18856 1.20851 1.14241 0.98830 0.93313 1.20508 0.94721 0.93764 0.96589 0.93834 0.94471 0.86740 0.74114 0.84932 0.83325 0.90345 0.88676 0.95052 0.76312 0.86275 0.86710 0.89208 0.87782 0.88278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 10.70 127.77 1.37 2.78 16 2 N -0.72 -11.37 5.71 -484.54 -2.77 -14.13 16 3 C 0.49 11.96 7.69 87.66 0.67 12.64 16 4 O -0.58 -22.40 15.35 -3.04 -0.05 -22.45 16 5 C -0.14 -2.19 5.24 29.85 0.16 -2.03 16 6 C 0.15 4.14 2.13 44.99 0.10 4.24 16 7 H 0.05 1.88 7.39 -2.39 -0.02 1.86 16 8 C -0.15 -3.36 9.48 71.98 0.68 -2.68 16 9 N -0.71 -25.08 4.17 -445.60 -1.86 -26.93 16 10 C 0.57 26.89 7.73 86.73 0.67 27.56 16 11 O -0.61 -32.18 15.98 -3.98 -0.06 -32.25 16 12 C -0.29 -14.65 5.89 -19.93 -0.12 -14.77 16 13 C -0.05 -2.51 9.47 22.25 0.21 -2.30 16 14 C -0.20 -10.25 8.63 22.47 0.19 -10.05 16 15 C 0.10 5.51 5.58 -21.28 -0.12 5.39 16 16 C -0.48 -24.94 9.04 23.46 0.21 -24.72 16 17 H 0.09 4.29 7.91 -2.91 -0.02 4.27 16 18 C 0.04 1.80 5.14 85.35 0.44 2.23 16 19 N -0.80 -39.68 10.95 21.87 0.24 -39.44 16 20 Si 0.99 35.66 29.60 68.60 2.03 37.69 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 22 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 23 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 24 C -0.25 -13.39 9.73 22.47 0.22 -13.17 16 25 C -0.04 -1.91 9.52 22.25 0.21 -1.70 16 26 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.11 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.42 2.74 8.83 -92.71 -0.82 1.92 16 30 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.15 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.40 12.50 6.60 -92.71 -0.61 11.89 16 36 H 0.12 4.68 6.37 -2.91 -0.02 4.66 16 37 H 0.12 5.99 6.16 -2.91 -0.02 5.97 16 38 H 0.30 12.95 8.29 -92.71 -0.77 12.18 16 39 H 0.10 5.16 8.06 -2.91 -0.02 5.14 16 40 H 0.10 5.08 7.63 -2.92 -0.02 5.06 16 Total: -1.00 -79.49 341.46 2.07 -77.42 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -0.36 Total: 36.67 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 4.90 Total: -16.58 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -4.39 Total: -80.51 kcal Atomic # 8 Polarization: -54.59 SS G_CDS: -0.11 Total: -54.70 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Total: -79.49 2.07 -77.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001460150532.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.412 kcal (2) G-P(sol) polarization free energy of solvation -79.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds