Wall clock time and date at job start Tue Mar 31 2020 06:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.47081 * 2 1 4 4 C 1.52997 * 109.46886 * 119.99933 * 2 1 3 5 5 N 1.46502 * 109.46852 * 174.99977 * 4 2 1 6 6 C 1.36943 * 120.00008 * 179.97438 * 5 4 2 7 7 H 1.08002 * 119.99779 * 0.02562 * 6 5 4 8 8 C 1.38803 * 119.99989 * 180.02562 * 6 5 4 9 9 N 1.31628 * 120.00471 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 120.00066 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47037 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47427 * 120.00096 * 10 8 6 13 13 H 1.48503 * 109.47094 * 239.99867 * 10 8 6 14 14 N 1.46500 * 109.46751 * 239.99848 * 2 1 3 15 15 C 1.34769 * 120.00224 * 85.00284 * 14 2 1 16 16 O 1.21284 * 119.99903 * 359.97438 * 15 14 2 17 17 C 1.50703 * 120.00397 * 179.97438 * 15 14 2 18 18 H 1.09001 * 110.85399 * 62.27709 * 17 15 14 19 19 C 1.54702 * 110.93936 * 298.54674 * 17 15 14 20 20 O 1.43775 * 102.78700 * 216.56217 * 19 17 15 21 21 C 1.36135 * 109.23665 * 27.74476 * 20 19 17 22 22 C 1.39286 * 129.88992 * 161.03238 * 21 20 19 23 23 C 1.37932 * 120.23770 * 179.53395 * 22 21 20 24 24 C 1.38281 * 120.35333 * 0.02562 * 23 22 21 25 25 C 1.38347 * 119.76760 * 0.19557 * 24 23 22 26 26 C 1.37747 * 119.97439 * 359.97438 * 25 24 23 27 27 H 1.08998 * 109.46857 * 60.00471 * 1 2 3 28 28 H 1.09007 * 109.46586 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.46680 * 300.00066 * 1 2 3 30 30 H 1.08999 * 109.47378 * 294.99989 * 4 2 1 31 31 H 1.08996 * 109.47551 * 55.00157 * 4 2 1 32 32 H 0.96996 * 119.99966 * 0.02562 * 5 4 2 33 33 H 0.96997 * 120.00412 * 180.02562 * 9 8 6 34 34 H 0.97003 * 120.00136 * 264.99362 * 14 2 1 35 35 H 1.09003 * 110.75039 * 98.23440 * 19 17 15 36 36 H 1.08997 * 110.74817 * 334.88557 * 19 17 15 37 37 H 1.07994 * 119.88158 * 359.52318 * 22 21 20 38 38 H 1.08007 * 119.82164 * 179.97438 * 23 22 21 39 39 H 1.07999 * 120.11766 * 180.17918 * 24 23 22 40 40 H 1.08000 * 120.01262 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1839 -1.4379 2.2072 7 1 3.6469 -1.8431 3.0521 8 6 5.5673 -1.5370 2.1519 9 7 6.2219 -1.0437 1.1220 10 14 6.5001 -2.3719 3.5384 11 1 5.5397 -2.8383 4.5705 12 1 7.2520 -3.5338 2.9999 13 1 7.4503 -1.4066 4.1472 14 7 2.0183 -0.6907 -1.1962 15 6 2.1471 -0.0184 -2.3571 16 8 1.8583 1.1583 -2.4117 17 6 2.6499 -0.7287 -3.5875 18 1 1.9716 -1.5315 -3.8765 19 6 4.0831 -1.2680 -3.3677 20 8 4.6954 -1.0782 -4.6546 21 6 4.0956 -0.0323 -5.2868 22 6 4.5437 0.7421 -6.3543 23 6 3.7583 1.7615 -6.8507 24 6 2.5203 2.0244 -6.2938 25 6 2.0698 1.2628 -5.2303 26 6 2.8540 0.2465 -4.7307 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.7517 -0.1583 2.1370 31 1 1.6054 -1.7198 1.2952 32 1 3.9824 -0.4621 0.4319 33 1 7.1886 -1.1133 1.0831 34 1 2.2491 -1.6318 -1.1526 35 1 4.0615 -2.3250 -3.1023 36 1 4.6011 -0.6876 -2.6042 37 1 5.5097 0.5438 -6.7947 38 1 4.1127 2.3582 -7.6784 39 1 1.9072 2.8217 -6.6874 40 1 1.1036 1.4649 -4.7920 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498207649.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:31 Heat of formation + Delta-G solvation = -51.046794 kcal Electronic energy + Delta-G solvation = -23094.394557 eV Core-core repulsion = 19680.910609 eV Total energy + Delta-G solvation = -3413.483948 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.45468 -40.48350 -38.36387 -37.70744 -35.46890 -34.06361 -32.92511 -31.60089 -30.98117 -30.02499 -27.42708 -25.38725 -24.52088 -23.77633 -23.07370 -21.93390 -21.30188 -19.26363 -18.51324 -18.41936 -17.75174 -17.11203 -16.75856 -16.55211 -16.21624 -15.98195 -15.33768 -15.26982 -14.99591 -14.75832 -14.37436 -14.14901 -13.91698 -13.67519 -13.63571 -13.49695 -13.12359 -13.01812 -12.82482 -12.64906 -12.58993 -12.10850 -11.95235 -11.89772 -11.77504 -11.69082 -11.03559 -10.88707 -10.09270 -9.85844 -9.17282 -9.01411 -7.94824 -5.24239 0.29662 0.41923 1.48208 1.49335 1.51530 1.58754 2.08373 2.26266 2.55948 2.81693 3.15712 3.40173 3.47230 3.69011 3.86977 3.89144 4.02519 4.09030 4.22163 4.29986 4.45751 4.46909 4.50678 4.52506 4.56499 4.70212 4.80015 4.86652 4.94148 5.05927 5.12237 5.30647 5.35643 5.46532 5.51096 5.53949 5.57040 5.64295 6.17387 6.25937 6.51791 7.17821 7.33817 8.06790 8.30422 9.28137 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017362 B = 0.004416 C = 0.003701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.335672 B = 6339.320721 C = 7562.915964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.140 3.860 3 H 0.057 0.943 4 C 0.145 3.855 5 N -0.744 5.744 6 C -0.243 4.243 7 H 0.079 0.921 8 C -0.070 4.070 9 N -0.967 5.967 10 Si 0.970 3.030 11 H -0.265 1.265 12 H -0.293 1.293 13 H -0.299 1.299 14 N -0.703 5.703 15 C 0.526 3.474 16 O -0.567 6.567 17 C -0.091 4.091 18 H 0.150 0.850 19 C 0.066 3.934 20 O -0.314 6.314 21 C 0.078 3.922 22 C -0.153 4.153 23 C -0.079 4.079 24 C -0.153 4.153 25 C -0.057 4.057 26 C -0.173 4.173 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.374 0.626 33 H 0.249 0.751 34 H 0.411 0.589 35 H 0.141 0.859 36 H 0.060 0.940 37 H 0.141 0.859 38 H 0.166 0.834 39 H 0.155 0.845 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.952 0.774 -14.284 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 H 0.076 0.924 4 C 0.018 3.982 5 N -0.387 5.387 6 C -0.374 4.374 7 H 0.097 0.903 8 C -0.263 4.263 9 N -0.618 5.618 10 Si 0.799 3.201 11 H -0.189 1.189 12 H -0.220 1.220 13 H -0.227 1.227 14 N -0.354 5.354 15 C 0.312 3.688 16 O -0.446 6.446 17 C -0.112 4.112 18 H 0.167 0.833 19 C -0.009 4.009 20 O -0.229 6.229 21 C 0.033 3.967 22 C -0.172 4.172 23 C -0.096 4.096 24 C -0.171 4.171 25 C -0.075 4.075 26 C -0.174 4.174 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.206 0.794 33 H 0.058 0.942 34 H 0.247 0.753 35 H 0.159 0.841 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.183 0.817 39 H 0.172 0.828 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.991 1.363 -14.171 17.985 hybrid contribution 1.115 -0.604 0.924 1.569 sum -9.877 0.759 -13.247 16.541 Atomic orbital electron populations 1.21996 0.92483 1.03247 1.02654 1.21118 0.95470 0.96064 0.83839 0.92426 1.21141 0.84022 0.98137 0.94864 1.42543 1.01855 1.69977 1.24333 1.19655 0.89828 1.28268 0.99672 0.90289 1.25497 0.97495 1.02966 1.00350 1.69821 1.06965 1.52776 1.32198 0.85128 0.78536 0.77328 0.79060 1.18895 1.22044 1.22669 1.45949 1.66029 1.14608 1.08794 1.20319 0.77056 0.86837 0.84622 1.90659 1.51567 1.16960 1.85394 1.21545 0.99473 0.98666 0.91556 0.83296 1.23870 0.89063 1.04447 0.83527 1.86816 1.59844 1.46235 1.29960 1.19980 0.91387 0.89282 0.96043 1.20614 1.02316 0.96561 0.97698 1.21291 0.93367 0.95461 0.99496 1.21426 0.97629 1.01230 0.96841 1.20532 0.99520 0.92566 0.94905 1.20448 0.96211 1.00986 0.99773 0.92847 0.90670 0.90274 0.94525 0.93865 0.79409 0.94164 0.75323 0.84139 0.92185 0.84076 0.81694 0.82777 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.48 71.99 0.68 -2.84 16 2 C 0.14 4.44 2.73 44.99 0.12 4.56 16 3 H 0.06 2.19 7.58 -2.39 -0.02 2.17 16 4 C 0.15 5.26 5.82 86.38 0.50 5.76 16 5 N -0.74 -35.60 5.43 -343.46 -1.87 -37.47 16 6 C -0.24 -12.90 9.99 84.03 0.84 -12.06 16 7 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 8 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 9 N -0.97 -57.89 13.06 21.65 0.28 -57.61 16 10 Si 0.97 45.04 29.55 68.60 2.03 47.06 16 11 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 12 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 13 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 14 N -0.70 -21.05 4.47 -442.53 -1.98 -23.03 16 15 C 0.53 16.80 7.05 87.66 0.62 17.42 16 16 O -0.57 -21.77 14.67 -3.04 -0.04 -21.81 16 17 C -0.09 -2.49 3.52 -11.40 -0.04 -2.53 16 18 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 19 C 0.07 1.94 7.50 72.56 0.54 2.48 16 20 O -0.31 -10.02 11.10 -95.09 -1.06 -11.08 16 21 C 0.08 2.36 7.04 22.67 0.16 2.52 16 22 C -0.15 -3.81 10.06 22.45 0.23 -3.58 16 23 C -0.08 -1.57 10.02 22.21 0.22 -1.35 16 24 C -0.15 -3.29 10.07 22.31 0.22 -3.06 16 25 C -0.06 -1.54 9.04 22.18 0.20 -1.33 16 26 C -0.17 -5.12 5.45 -19.53 -0.11 -5.22 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 29 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.37 19.47 7.33 -92.71 -0.68 18.79 16 33 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 34 H 0.41 11.17 8.60 -92.71 -0.80 10.37 16 35 H 0.14 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.06 2.15 7.91 -2.39 -0.02 2.13 16 37 H 0.14 2.97 8.06 -2.91 -0.02 2.94 16 38 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 39 H 0.15 2.34 8.06 -2.91 -0.02 2.31 16 40 H 0.12 3.30 7.65 -2.91 -0.02 3.28 16 Total: -1.00 -69.85 339.25 1.61 -68.24 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.42 Total: 38.38 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 4.66 Total: -2.69 kcal Atomic # 7 Polarization: -114.54 SS G_CDS: -3.56 Total: -118.10 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.10 Total: -32.89 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -69.85 1.61 -68.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498207649.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.193 kcal (2) G-P(sol) polarization free energy of solvation -69.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds