Wall clock time and date at job start Tue Mar 31 2020 06:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00242 * 2 1 4 4 O 1.42902 * 109.47542 * 135.00146 * 3 2 1 5 5 C 1.35646 * 117.00376 * 180.02562 * 4 3 2 6 6 C 1.39348 * 120.53719 * 0.29289 * 5 4 3 7 7 C 1.38303 * 118.43527 * 180.28797 * 6 5 4 8 8 C 1.38771 * 119.44415 * 359.44002 * 7 6 5 9 9 N 1.31372 * 121.06749 * 0.27622 * 8 7 6 10 10 C 1.32854 * 121.70165 * 0.02562 * 9 8 7 11 11 C 1.47822 * 119.79016 * 179.97438 * 10 9 8 12 12 O 1.21555 * 120.00376 * 173.78103 * 11 10 9 13 13 N 1.34780 * 119.99659 * 353.78544 * 11 10 9 14 14 C 1.46499 * 120.00253 * 2.81964 * 13 11 10 15 15 C 1.46498 * 119.99569 * 182.81666 * 13 11 10 16 16 H 1.09000 * 109.47774 * 0.02562 * 15 13 11 17 17 C 1.53004 * 109.47182 * 240.00064 * 15 13 11 18 18 C 1.50705 * 109.46964 * 120.00124 * 15 13 11 19 19 H 1.08000 * 119.99586 * 0.02562 * 18 15 13 20 20 C 1.37880 * 119.99995 * 179.97438 * 18 15 13 21 21 N 1.31508 * 120.00040 * 0.02562 * 20 18 15 22 22 Si 1.86796 * 119.99947 * 179.97438 * 20 18 15 23 23 H 1.48510 * 109.47165 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47194 * 120.00039 * 22 20 18 25 25 H 1.48504 * 109.47353 * 240.00278 * 22 20 18 26 26 H 1.07995 * 120.00137 * 180.02562 * 1 2 3 27 27 H 1.08002 * 119.99619 * 0.02562 * 1 2 3 28 28 H 1.08003 * 120.00444 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.47069 * 14.99713 * 3 2 1 30 30 H 1.09009 * 109.47129 * 255.00044 * 3 2 1 31 31 H 1.07998 * 120.78274 * 0.02863 * 6 5 4 32 32 H 1.07994 * 120.27976 * 179.71312 * 7 6 5 33 33 H 1.08005 * 119.46430 * 180.25880 * 8 7 6 34 34 H 1.08996 * 109.47041 * 83.83557 * 14 13 11 35 35 H 1.09000 * 109.46872 * 203.83783 * 14 13 11 36 36 H 1.09005 * 109.46587 * 323.83975 * 14 13 11 37 37 H 1.08996 * 109.47081 * 60.00130 * 17 15 13 38 38 H 1.09003 * 109.47168 * 180.02562 * 17 15 13 39 39 H 1.08997 * 109.46826 * 299.99899 * 17 15 13 40 40 H 0.96998 * 120.00291 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2413 0.9526 5 6 3.9077 2.3432 1.0787 6 6 3.6614 3.4775 0.3077 7 6 4.4885 4.5745 0.4671 8 6 5.5234 4.5201 1.3899 9 7 5.7334 3.4418 2.1104 10 6 4.9699 2.3614 1.9888 11 6 5.2445 1.1707 2.8207 12 8 4.4834 0.2232 2.7959 13 7 6.3389 1.1356 3.6066 14 6 7.2230 2.3012 3.6838 15 6 6.6442 -0.0681 4.3838 16 1 5.8804 -0.8235 4.1990 17 6 6.6686 0.2792 5.8737 18 6 7.9906 -0.6045 3.9709 19 1 8.5619 -0.0990 3.2064 20 6 8.4936 -1.7400 4.5699 21 7 7.7981 -2.3552 5.5012 22 14 10.1622 -2.4053 4.0576 23 1 10.7370 -1.5377 2.9982 24 1 11.0711 -2.4199 5.2319 25 1 10.0054 -3.7867 3.5357 26 1 -0.5400 -0.9352 0.0004 27 1 -0.5399 0.9354 -0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 1.3855 2.1161 0.2659 30 1 2.4756 1.4867 -0.9927 31 1 2.8465 3.4980 -0.4008 32 1 4.3275 5.4675 -0.1185 33 1 6.1669 5.3781 1.5177 34 1 6.8282 3.0090 4.4127 35 1 8.2192 1.9819 3.9900 36 1 7.2792 2.7799 2.7061 37 1 5.6948 0.6672 6.1723 38 1 6.8962 -0.6163 6.4519 39 1 7.4327 1.0343 6.0582 40 1 8.1518 -3.1543 5.9223 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518823806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:46 Heat of formation + Delta-G solvation = 11.436544 kcal Electronic energy + Delta-G solvation = -23212.201484 eV Core-core repulsion = 19801.427017 eV Total energy + Delta-G solvation = -3410.774467 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.82819 -38.65915 -38.05775 -35.17984 -34.20886 -33.00091 -32.06104 -30.51673 -29.07573 -26.82452 -25.90019 -25.13318 -24.36120 -22.90038 -21.33569 -20.08774 -18.98964 -18.06008 -17.09039 -16.65392 -16.18950 -16.15564 -15.42575 -14.97146 -14.83413 -14.52369 -14.20169 -14.07545 -13.51368 -13.13249 -12.99272 -12.77360 -12.34627 -12.02732 -11.99402 -11.61538 -11.46136 -11.35434 -11.12429 -10.99511 -10.74921 -10.58704 -10.14677 -10.08108 -9.82444 -9.68826 -9.45247 -9.00430 -8.67800 -8.39266 -8.33619 -7.34860 -5.98618 -4.05729 0.81156 1.22330 1.90945 3.23210 3.30244 3.31869 3.39321 3.43430 3.90889 4.20677 4.43844 4.48505 4.50303 4.70788 4.72345 4.86558 5.00548 5.02006 5.16867 5.25082 5.32266 5.53520 5.66790 5.88259 5.90021 6.24607 6.38861 6.39728 6.45636 6.50713 6.84847 6.92222 7.00574 7.19018 7.26112 7.58950 7.65136 7.82625 7.87100 8.14020 8.30556 8.68184 8.93477 9.19572 9.60308 11.06767 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.004713 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.238261 B = 5939.154567 C = 6973.505653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.146 4.146 3 C 0.078 3.922 4 O -0.262 6.262 5 C 0.133 3.867 6 C -0.180 4.180 7 C -0.118 4.118 8 C 0.046 3.954 9 N -0.408 5.408 10 C 0.062 3.938 11 C 0.552 3.448 12 O -0.531 6.531 13 N -0.571 5.571 14 C 0.082 3.918 15 C 0.256 3.744 16 H 0.063 0.937 17 C -0.144 4.144 18 C -0.521 4.521 19 H 0.060 0.940 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.108 0.892 27 H 0.097 0.903 28 H 0.124 0.876 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.162 0.838 34 H 0.038 0.962 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.011 0.989 38 H 0.093 0.907 39 H 0.030 0.970 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.872 13.711 -11.485 20.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.003 3.997 4 O -0.172 6.172 5 C 0.082 3.918 6 C -0.207 4.207 7 C -0.138 4.138 8 C -0.114 4.114 9 N -0.121 5.121 10 C -0.078 4.078 11 C 0.336 3.664 12 O -0.408 6.408 13 N -0.301 5.301 14 C -0.062 4.062 15 C 0.156 3.844 16 H 0.081 0.919 17 C -0.203 4.203 18 C -0.560 4.560 19 H 0.079 0.921 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.210 1.210 26 H 0.126 0.874 27 H 0.115 0.885 28 H 0.142 0.858 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.179 0.821 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.030 0.970 38 H 0.111 0.889 39 H 0.049 0.951 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.571 12.768 -10.633 19.175 hybrid contribution 0.215 -0.002 -1.050 1.072 sum -9.356 12.765 -11.683 19.672 Atomic orbital electron populations 1.23815 0.95318 1.02351 0.99958 1.22671 0.95596 0.97981 1.00123 1.21951 0.88280 0.97231 0.92254 1.86508 1.40611 1.33344 1.56752 1.20042 0.91009 0.86803 0.93914 1.21685 1.02920 0.93612 1.02458 1.22098 0.95072 0.98435 0.98197 1.22870 0.97521 0.96663 0.94307 1.68382 1.23029 0.98831 1.21809 1.21292 0.93062 0.95277 0.98137 1.17618 0.82776 0.85201 0.80780 1.90782 1.47591 1.35849 1.66557 1.48118 1.22523 1.16943 1.42485 1.22129 0.94163 0.87175 1.02728 1.18997 0.97161 0.81258 0.87001 0.91921 1.22063 0.96733 1.02042 0.99448 1.21383 1.02776 1.10506 1.21325 0.92139 1.24888 0.97657 0.96366 0.94925 1.69897 1.37633 1.19346 1.25827 0.86445 0.83736 0.78857 0.78377 1.19809 1.20974 1.20985 0.87412 0.88504 0.85775 0.91603 0.91099 0.84125 0.84475 0.82114 0.94320 0.91585 0.89071 0.97038 0.88882 0.95099 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.64 14.31 29.02 0.42 -1.22 16 2 C -0.15 -1.68 9.89 -36.03 -0.36 -2.04 16 3 C 0.08 0.91 5.17 36.01 0.19 1.09 16 4 O -0.26 -4.50 8.20 -40.50 -0.33 -4.83 16 5 C 0.13 2.16 6.71 -38.55 -0.26 1.90 16 6 C -0.18 -2.07 9.13 -39.14 -0.36 -2.42 16 7 C -0.12 -1.16 10.10 -39.36 -0.40 -1.56 16 8 C 0.05 0.53 11.17 -17.55 -0.20 0.33 16 9 N -0.41 -6.56 5.99 -9.71 -0.06 -6.62 16 10 C 0.06 1.17 6.65 -82.89 -0.55 0.62 16 11 C 0.55 13.02 7.65 -12.34 -0.09 12.93 16 12 O -0.53 -14.15 14.50 -16.54 -0.24 -14.39 16 13 N -0.57 -13.63 2.75 -176.38 -0.49 -14.12 16 14 C 0.08 1.62 8.29 59.85 0.50 2.12 16 15 C 0.26 6.96 2.63 -69.08 -0.18 6.78 16 16 H 0.06 1.95 6.90 -51.93 -0.36 1.59 16 17 C -0.14 -3.68 8.97 37.16 0.33 -3.34 16 18 C -0.52 -14.74 7.95 -34.44 -0.27 -15.01 16 19 H 0.06 1.70 7.44 -52.49 -0.39 1.31 16 20 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 21 N -0.89 -25.87 11.32 55.43 0.63 -25.24 16 22 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 27 H 0.10 0.73 7.90 -52.49 -0.41 0.32 16 28 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 29 H 0.07 0.62 7.40 -51.93 -0.38 0.24 16 30 H 0.07 0.67 7.71 -51.92 -0.40 0.27 16 31 H 0.14 1.15 6.46 -52.49 -0.34 0.81 16 32 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 33 H 0.16 1.32 8.06 -52.48 -0.42 0.89 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 1.35 7.12 -51.93 -0.37 0.98 16 36 H 0.09 1.67 5.16 -53.38 -0.28 1.39 16 37 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 39 H 0.03 0.73 7.67 -51.93 -0.40 0.33 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 334.20 15.07 5.04 5.04 Total: -1.00 -34.05 334.20 -7.12 -41.17 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -5.32 Total: 0.49 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: -1.33 Total: 1.87 kcal Atomic # 7 Polarization: -46.06 SS G_CDS: 0.08 Total: -45.98 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.57 Total: -19.22 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.05 -7.12 -41.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518823806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.608 kcal (2) G-P(sol) polarization free energy of solvation -34.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds