Wall clock time and date at job start Tue Mar 31 2020 06:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00162 * 2 1 4 4 O 1.42903 * 109.46863 * 135.00284 * 3 2 1 5 5 C 1.35652 * 116.99379 * 179.97438 * 4 3 2 6 6 C 1.39335 * 120.54399 * 0.02562 * 5 4 3 7 7 C 1.38307 * 118.44269 * 179.97438 * 6 5 4 8 8 C 1.38770 * 119.44021 * 0.02562 * 7 6 5 9 9 N 1.31373 * 121.06932 * 0.02562 * 8 7 6 10 10 C 1.32864 * 121.69500 * 359.69054 * 9 8 7 11 11 C 1.47829 * 119.78192 * 180.31127 * 10 9 8 12 12 O 1.21557 * 119.99836 * 174.03010 * 11 10 9 13 13 N 1.34777 * 120.00099 * 354.02914 * 11 10 9 14 14 C 1.46499 * 119.99935 * 2.78748 * 13 11 10 15 15 C 1.46493 * 119.99776 * 182.78765 * 13 11 10 16 16 H 1.09005 * 109.47890 * 359.97438 * 15 13 11 17 17 C 1.52997 * 109.47216 * 120.00028 * 15 13 11 18 18 C 1.50704 * 109.47297 * 240.00242 * 15 13 11 19 19 H 1.08002 * 119.99599 * 359.97438 * 18 15 13 20 20 C 1.37872 * 120.00277 * 180.02562 * 18 15 13 21 21 N 1.31513 * 120.00357 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99929 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.47250 * 89.99830 * 22 20 18 24 24 H 1.48504 * 109.47129 * 209.99462 * 22 20 18 25 25 H 1.48501 * 109.47264 * 329.99835 * 22 20 18 26 26 H 1.08003 * 120.00054 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00331 * 180.02562 * 1 2 3 28 28 H 1.08007 * 119.99582 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46848 * 255.00241 * 3 2 1 30 30 H 1.08998 * 109.47037 * 15.00041 * 3 2 1 31 31 H 1.08008 * 120.78120 * 359.94877 * 6 5 4 32 32 H 1.07997 * 120.27685 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.46329 * 179.97438 * 8 7 6 34 34 H 1.08994 * 109.46877 * 83.83132 * 14 13 11 35 35 H 1.08996 * 109.46855 * 203.82965 * 14 13 11 36 36 H 1.08999 * 109.47202 * 323.82508 * 14 13 11 37 37 H 1.09000 * 109.47012 * 60.00002 * 17 15 13 38 38 H 1.09006 * 109.47334 * 179.97438 * 17 15 13 39 39 H 1.09001 * 109.47376 * 299.99542 * 17 15 13 40 40 H 0.96994 * 120.00455 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9083 2.3428 1.0779 6 6 3.6662 3.4747 0.3023 7 6 4.4897 4.5738 0.4658 8 6 5.5247 4.5193 1.3885 9 7 5.7351 3.4408 2.1085 10 6 4.9678 2.3625 1.9911 11 6 5.2385 1.1740 2.8275 12 8 4.4765 0.2273 2.8031 13 7 6.3302 1.1403 3.6172 14 6 7.2156 2.3049 3.6932 15 6 6.6314 -0.0611 4.3996 16 1 5.8666 -0.8158 4.2156 17 6 7.9989 -0.6090 3.9868 18 6 6.6510 0.2861 5.8659 19 1 6.4588 1.3004 6.1832 20 6 6.9154 -0.6908 6.8022 21 7 7.1499 -1.9258 6.4159 22 14 6.9404 -0.2601 8.6197 23 1 5.5794 -0.4328 9.1882 24 1 7.8898 -1.1561 9.3277 25 1 7.3719 1.1508 8.7883 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 2.4755 1.4867 -0.9927 30 1 1.3856 2.1161 0.2660 31 1 2.8547 3.4933 -0.4102 32 1 4.3285 5.4669 -0.1197 33 1 6.1682 5.3772 1.5162 34 1 6.8194 3.0158 4.4181 35 1 8.2103 1.9854 4.0039 36 1 7.2760 2.7799 2.7140 37 1 8.7634 0.1458 4.1712 38 1 8.2232 -1.5027 4.5693 39 1 7.9847 -0.8603 2.9263 40 1 7.3355 -2.6131 7.0746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518823808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:48 Heat of formation + Delta-G solvation = 12.440939 kcal Electronic energy + Delta-G solvation = -23204.241021 eV Core-core repulsion = 19793.510108 eV Total energy + Delta-G solvation = -3410.730913 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.83311 -38.66293 -38.06039 -35.18501 -34.21152 -32.99845 -32.05976 -30.52029 -29.07370 -26.82880 -25.92477 -25.12787 -24.36409 -22.90366 -21.33186 -20.09069 -18.97140 -18.06315 -17.09556 -16.64393 -16.28970 -16.07279 -15.41251 -14.94011 -14.88224 -14.53839 -14.20656 -14.06935 -13.52815 -13.09562 -13.00382 -12.76236 -12.44142 -12.06456 -11.98141 -11.63231 -11.45256 -11.33195 -11.12991 -10.95853 -10.73270 -10.60848 -10.13918 -10.06392 -9.83705 -9.69023 -9.40268 -9.03749 -8.67105 -8.39961 -8.32318 -7.34637 -5.97115 -4.04069 0.80650 1.21820 1.90699 3.22737 3.30034 3.34369 3.40237 3.43532 3.90725 4.20083 4.43704 4.49504 4.50222 4.70394 4.72126 4.86488 4.99274 5.01659 5.16449 5.25062 5.33714 5.52995 5.66383 5.87575 5.89591 6.23680 6.31486 6.38668 6.44975 6.59587 6.80156 6.90810 6.98879 7.17783 7.25083 7.59710 7.63801 7.83236 7.87372 8.13771 8.31495 8.68529 8.94994 9.19770 9.61915 11.08212 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.004669 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.405750 B = 5995.273493 C = 7061.078224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.146 4.146 3 C 0.078 3.922 4 O -0.262 6.262 5 C 0.133 3.867 6 C -0.180 4.180 7 C -0.118 4.118 8 C 0.046 3.954 9 N -0.408 5.408 10 C 0.062 3.938 11 C 0.551 3.449 12 O -0.530 6.530 13 N -0.571 5.571 14 C 0.085 3.915 15 C 0.256 3.744 16 H 0.063 0.937 17 C -0.146 4.146 18 C -0.520 4.520 19 H 0.059 0.941 20 C 0.063 3.937 21 N -0.890 5.890 22 Si 0.898 3.102 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.162 0.838 34 H 0.043 0.957 35 H 0.058 0.942 36 H 0.091 0.909 37 H 0.031 0.969 38 H 0.094 0.906 39 H 0.011 0.989 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 11.944 -15.314 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.164 4.164 3 C 0.003 3.997 4 O -0.172 6.172 5 C 0.082 3.918 6 C -0.207 4.207 7 C -0.138 4.138 8 C -0.113 4.113 9 N -0.120 5.120 10 C -0.078 4.078 11 C 0.336 3.664 12 O -0.407 6.407 13 N -0.301 5.301 14 C -0.059 4.059 15 C 0.156 3.844 16 H 0.081 0.919 17 C -0.204 4.204 18 C -0.558 4.558 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.115 0.885 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.179 0.821 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.050 0.950 38 H 0.112 0.888 39 H 0.030 0.970 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.866 10.975 -14.510 19.446 hybrid contribution -0.704 0.611 0.252 0.966 sum -7.570 11.586 -14.258 19.871 Atomic orbital electron populations 1.23822 0.95333 1.02377 0.99828 1.22660 0.95601 0.97932 1.00240 1.21949 0.88300 0.97268 0.92191 1.86510 1.40576 1.33367 1.56783 1.20036 0.91001 0.86859 0.93905 1.21685 1.02951 0.93613 1.02408 1.22101 0.95081 0.98390 0.98242 1.22873 0.97529 0.96650 0.94274 1.68385 1.23277 0.98863 1.21519 1.21302 0.93138 0.95350 0.97968 1.17616 0.82745 0.85275 0.80797 1.90786 1.46978 1.35965 1.66951 1.48115 1.23117 1.17220 1.41661 1.22107 0.93660 0.87605 1.02535 1.18991 0.94401 0.81953 0.89070 0.91906 1.22090 0.98341 1.02684 0.97325 1.21338 1.48281 0.95755 0.90464 0.92249 1.24883 0.95063 0.94864 0.99031 1.69883 1.48078 1.01031 1.33860 0.86498 0.77834 0.78224 0.84836 1.20691 1.21185 1.19916 0.88484 0.87404 0.85816 0.91130 0.91583 0.84124 0.84470 0.82108 0.93817 0.92286 0.89171 0.94988 0.88796 0.97019 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.63 14.31 29.02 0.42 -1.22 16 2 C -0.15 -1.67 9.89 -36.02 -0.36 -2.03 16 3 C 0.08 0.90 5.17 36.01 0.19 1.09 16 4 O -0.26 -4.47 8.20 -40.52 -0.33 -4.80 16 5 C 0.13 2.14 6.71 -38.56 -0.26 1.88 16 6 C -0.18 -2.05 9.13 -39.15 -0.36 -2.41 16 7 C -0.12 -1.15 10.10 -39.36 -0.40 -1.55 16 8 C 0.05 0.53 11.17 -17.55 -0.20 0.34 16 9 N -0.41 -6.55 5.99 -9.71 -0.06 -6.61 16 10 C 0.06 1.16 6.65 -82.88 -0.55 0.61 16 11 C 0.55 13.00 7.65 -12.34 -0.09 12.90 16 12 O -0.53 -14.15 14.49 -16.55 -0.24 -14.39 16 13 N -0.57 -13.64 2.75 -176.39 -0.49 -14.12 16 14 C 0.08 1.68 8.57 59.85 0.51 2.19 16 15 C 0.26 6.97 2.62 -69.09 -0.18 6.79 16 16 H 0.06 1.95 6.90 -51.93 -0.36 1.59 16 17 C -0.15 -3.69 8.96 37.16 0.33 -3.35 16 18 C -0.52 -14.83 8.37 -34.44 -0.29 -15.12 16 19 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 20 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 21 N -0.89 -25.98 11.32 55.43 0.63 -25.36 16 22 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 26 H 0.10 0.74 7.90 -52.48 -0.41 0.33 16 27 H 0.11 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 29 H 0.07 0.65 7.70 -51.93 -0.40 0.25 16 30 H 0.07 0.63 7.42 -51.93 -0.39 0.25 16 31 H 0.14 1.14 6.46 -52.48 -0.34 0.80 16 32 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.16 1.31 8.06 -52.49 -0.42 0.89 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.17 6.44 -51.93 -0.33 0.83 16 36 H 0.09 1.60 5.15 -53.53 -0.28 1.32 16 37 H 0.03 0.75 6.67 -51.93 -0.35 0.40 16 38 H 0.09 2.56 6.07 -51.93 -0.32 2.25 16 39 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 333.40 15.07 5.02 5.02 Total: -1.00 -34.25 333.40 -7.06 -41.30 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.24 Total: 0.30 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -1.33 Total: 1.83 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.08 Total: -46.09 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.57 Total: -19.20 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -34.25 -7.06 -41.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518823808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.743 kcal (2) G-P(sol) polarization free energy of solvation -34.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds