Wall clock time and date at job start Tue Mar 31 2020 06:41:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 120.00162 * 2 1 4 4 O 1.42903 * 109.46863 * 135.00284 * 3 2 1 5 5 C 1.35652 * 116.99379 * 179.97438 * 4 3 2 6 6 C 1.39335 * 120.54399 * 0.02562 * 5 4 3 7 7 C 1.38307 * 118.44269 * 179.97438 * 6 5 4 8 8 C 1.38770 * 119.44021 * 0.02562 * 7 6 5 9 9 N 1.31373 * 121.06932 * 0.02562 * 8 7 6 10 10 C 1.32864 * 121.69500 * 359.69054 * 9 8 7 11 11 C 1.47829 * 119.78192 * 180.31127 * 10 9 8 12 12 O 1.21557 * 119.99836 * 174.03010 * 11 10 9 13 13 N 1.34777 * 120.00099 * 354.02914 * 11 10 9 14 14 C 1.46499 * 119.99935 * 2.78748 * 13 11 10 15 15 C 1.46493 * 119.99776 * 182.78765 * 13 11 10 16 16 H 1.09005 * 109.47890 * 359.97438 * 15 13 11 17 17 C 1.52997 * 109.47216 * 120.00028 * 15 13 11 18 18 C 1.50704 * 109.47297 * 240.00242 * 15 13 11 19 19 H 1.08002 * 119.99599 * 359.97438 * 18 15 13 20 20 C 1.37872 * 120.00277 * 180.02562 * 18 15 13 21 21 N 1.31513 * 120.00357 * 359.97438 * 20 18 15 22 22 Si 1.86799 * 119.99929 * 179.97438 * 20 18 15 23 23 H 1.48507 * 109.47250 * 89.99830 * 22 20 18 24 24 H 1.48504 * 109.47129 * 209.99462 * 22 20 18 25 25 H 1.48501 * 109.47264 * 329.99835 * 22 20 18 26 26 H 1.08003 * 120.00054 * 359.97438 * 1 2 3 27 27 H 1.08000 * 120.00331 * 180.02562 * 1 2 3 28 28 H 1.08007 * 119.99582 * 180.02562 * 2 1 3 29 29 H 1.09003 * 109.46848 * 255.00241 * 3 2 1 30 30 H 1.08998 * 109.47037 * 15.00041 * 3 2 1 31 31 H 1.08008 * 120.78120 * 359.94877 * 6 5 4 32 32 H 1.07997 * 120.27685 * 180.02562 * 7 6 5 33 33 H 1.07997 * 119.46329 * 179.97438 * 8 7 6 34 34 H 1.08994 * 109.46877 * 83.83132 * 14 13 11 35 35 H 1.08996 * 109.46855 * 203.82965 * 14 13 11 36 36 H 1.08999 * 109.47202 * 323.82508 * 14 13 11 37 37 H 1.09000 * 109.47012 * 60.00002 * 17 15 13 38 38 H 1.09006 * 109.47334 * 179.97438 * 17 15 13 39 39 H 1.09001 * 109.47376 * 299.99542 * 17 15 13 40 40 H 0.96994 * 120.00455 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9527 5 6 3.9083 2.3428 1.0779 6 6 3.6662 3.4747 0.3023 7 6 4.4897 4.5738 0.4658 8 6 5.5247 4.5193 1.3885 9 7 5.7351 3.4408 2.1085 10 6 4.9678 2.3625 1.9911 11 6 5.2385 1.1740 2.8275 12 8 4.4765 0.2273 2.8031 13 7 6.3302 1.1403 3.6172 14 6 7.2156 2.3049 3.6932 15 6 6.6314 -0.0611 4.3996 16 1 5.8666 -0.8158 4.2156 17 6 7.9989 -0.6090 3.9868 18 6 6.6510 0.2861 5.8659 19 1 6.4588 1.3004 6.1832 20 6 6.9154 -0.6908 6.8022 21 7 7.1499 -1.9258 6.4159 22 14 6.9404 -0.2601 8.6197 23 1 5.5794 -0.4328 9.1882 24 1 7.8898 -1.1561 9.3277 25 1 7.3719 1.1508 8.7883 26 1 -0.5400 0.9353 0.0004 27 1 -0.5401 -0.9353 0.0004 28 1 1.8499 -0.9354 -0.0004 29 1 2.4755 1.4867 -0.9927 30 1 1.3856 2.1161 0.2660 31 1 2.8547 3.4933 -0.4102 32 1 4.3285 5.4669 -0.1197 33 1 6.1682 5.3772 1.5162 34 1 6.8194 3.0158 4.4181 35 1 8.2103 1.9854 4.0039 36 1 7.2760 2.7799 2.7140 37 1 8.7634 0.1458 4.1712 38 1 8.2232 -1.5027 4.5693 39 1 7.9847 -0.8603 2.9263 40 1 7.3355 -2.6131 7.0746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001518823808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:47 Heat of formation + Delta-G solvation = -9.456983 kcal Electronic energy + Delta-G solvation = -23205.190587 eV Core-core repulsion = 19793.510108 eV Total energy + Delta-G solvation = -3411.680479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.98248 -40.17244 -39.28697 -37.10327 -35.11090 -34.82527 -33.36039 -31.74167 -30.90691 -27.69024 -27.59383 -27.30520 -25.70517 -23.89868 -22.97438 -21.07088 -20.54346 -19.11742 -18.55171 -18.32121 -17.80432 -17.23076 -17.05364 -16.48164 -16.14498 -15.82960 -15.72545 -15.13605 -14.75675 -14.56888 -14.34021 -14.16159 -13.87224 -13.76179 -13.46281 -13.02653 -12.94430 -12.78799 -12.70822 -12.61898 -12.51136 -12.19621 -12.10140 -11.97481 -11.20681 -11.00595 -10.76580 -10.53914 -10.50658 -10.03922 -9.56891 -9.16536 -8.14491 -6.31612 -0.28030 0.27061 1.08791 1.39624 1.41538 1.52225 1.92773 2.24621 2.33511 2.47854 2.88063 3.12167 3.30695 3.60541 3.70733 3.91979 4.05783 4.07661 4.15254 4.28587 4.46841 4.48307 4.60710 4.80433 4.86369 4.89723 4.92677 4.96676 5.04448 5.08222 5.22754 5.43955 5.53382 5.58986 5.62258 5.65798 5.72035 6.04112 6.15910 6.29489 6.73486 6.76458 6.91398 7.31140 7.48820 8.89968 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016347 B = 0.004669 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.405750 B = 5995.273493 C = 7061.078224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.184 4.184 3 C 0.074 3.926 4 O -0.307 6.307 5 C 0.121 3.879 6 C -0.169 4.169 7 C -0.085 4.085 8 C 0.049 3.951 9 N -0.431 5.431 10 C 0.010 3.990 11 C 0.539 3.461 12 O -0.582 6.582 13 N -0.584 5.584 14 C 0.093 3.907 15 C 0.259 3.741 16 H 0.008 0.992 17 C -0.130 4.130 18 C -0.538 4.538 19 H 0.054 0.946 20 C 0.015 3.985 21 N -0.917 5.917 22 Si 0.968 3.032 23 H -0.281 1.281 24 H -0.275 1.275 25 H -0.263 1.263 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.180 0.820 32 H 0.194 0.806 33 H 0.202 0.798 34 H 0.041 0.959 35 H 0.054 0.946 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.018 0.982 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 16.006 -16.760 24.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.203 4.203 3 C 0.000 4.000 4 O -0.219 6.219 5 C 0.070 3.930 6 C -0.195 4.195 7 C -0.105 4.105 8 C -0.113 4.113 9 N -0.144 5.144 10 C -0.125 4.125 11 C 0.327 3.673 12 O -0.463 6.463 13 N -0.314 5.314 14 C -0.049 4.049 15 C 0.157 3.843 16 H 0.026 0.974 17 C -0.188 4.188 18 C -0.577 4.577 19 H 0.073 0.927 20 C -0.185 4.185 21 N -0.556 5.556 22 Si 0.793 3.207 23 H -0.207 1.207 24 H -0.200 1.200 25 H -0.187 1.187 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.197 0.803 32 H 0.211 0.789 33 H 0.219 0.781 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.135 0.865 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.037 0.963 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.523 15.043 -15.968 23.192 hybrid contribution -0.623 -0.536 0.545 0.986 sum -8.147 14.508 -15.422 22.687 Atomic orbital electron populations 1.24090 0.94465 1.03971 0.96463 1.22683 0.96604 0.97520 1.03455 1.22244 0.87622 0.97789 0.92360 1.86461 1.42022 1.34822 1.58566 1.20231 0.90355 0.88187 0.94253 1.22157 1.03892 0.91952 1.01531 1.22741 0.92296 0.99175 0.96267 1.23671 0.98392 0.95977 0.93262 1.68064 1.23760 0.99387 1.23145 1.20459 0.96750 0.94903 1.00408 1.18478 0.81615 0.86614 0.80585 1.90721 1.48487 1.38519 1.68602 1.48130 1.24301 1.17178 1.41741 1.22235 0.92411 0.86174 1.04130 1.18614 0.93457 0.82628 0.89562 0.97403 1.21865 0.97758 1.01989 0.97213 1.21527 1.49006 0.95722 0.91424 0.92739 1.25761 0.94337 0.94615 1.03736 1.70020 1.48205 1.01941 1.35467 0.85411 0.77822 0.78609 0.78892 1.20740 1.19995 1.18742 0.86108 0.86477 0.88312 0.88812 0.89153 0.80256 0.78897 0.78091 0.94002 0.92684 0.86521 0.93392 0.90974 0.96325 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 14.31 67.78 0.97 -1.68 16 2 C -0.18 -4.33 9.89 25.65 0.25 -4.07 16 3 C 0.07 1.64 5.17 71.24 0.37 2.01 16 4 O -0.31 -10.85 8.20 -68.76 -0.56 -11.42 16 5 C 0.12 3.83 6.71 22.93 0.15 3.98 16 6 C -0.17 -3.14 9.13 22.55 0.21 -2.93 16 7 C -0.09 -1.15 10.10 22.41 0.23 -0.92 16 8 C 0.05 0.91 11.17 84.89 0.95 1.86 16 9 N -0.43 -13.23 5.99 -184.63 -1.11 -14.33 16 10 C 0.01 0.40 6.65 41.93 0.28 0.67 16 11 C 0.54 27.26 7.65 86.78 0.66 27.93 16 12 O -0.58 -34.13 14.49 17.01 0.25 -33.88 16 13 N -0.58 -29.53 2.75 -830.25 -2.29 -31.82 16 14 C 0.09 3.76 8.57 127.77 1.09 4.86 16 15 C 0.26 15.07 2.62 44.25 0.12 15.19 16 16 H 0.01 0.54 6.90 -2.38 -0.02 0.53 16 17 C -0.13 -6.89 8.96 71.98 0.64 -6.24 16 18 C -0.54 -32.06 8.37 25.60 0.21 -31.85 16 19 H 0.05 3.21 7.65 -2.91 -0.02 3.19 16 20 C 0.01 0.87 5.30 84.65 0.45 1.31 16 21 N -0.92 -55.62 11.32 21.45 0.24 -55.38 16 22 Si 0.97 45.59 29.54 68.60 2.03 47.61 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 24 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 25 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 26 H 0.12 1.50 7.90 -2.91 -0.02 1.48 16 27 H 0.12 1.76 8.06 -2.91 -0.02 1.73 16 28 H 0.10 2.72 8.06 -2.91 -0.02 2.70 16 29 H 0.09 1.54 7.70 -2.39 -0.02 1.52 16 30 H 0.09 1.48 7.42 -2.39 -0.02 1.47 16 31 H 0.18 1.87 6.46 -2.91 -0.02 1.85 16 32 H 0.19 0.58 8.06 -2.91 -0.02 0.56 16 33 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.05 2.21 6.44 -2.39 -0.02 2.19 16 36 H 0.12 4.11 5.15 -5.54 -0.03 4.08 16 37 H 0.05 2.32 6.67 -2.39 -0.02 2.31 16 38 H 0.07 4.14 6.07 -2.38 -0.01 4.12 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -83.95 333.40 6.18 -77.78 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.03 Total: 11.34 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 6.59 Total: 10.10 kcal Atomic # 7 Polarization: -98.38 SS G_CDS: -3.15 Total: -101.53 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.32 Total: -45.30 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -83.95 6.18 -77.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518823808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.320 kcal (2) G-P(sol) polarization free energy of solvation -83.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds