Wall clock time and date at job start Tue Mar 31 2020 06:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46845 * 2 1 4 4 C 1.53005 * 109.47126 * 119.99968 * 2 1 3 5 5 C 1.50698 * 109.46676 * 184.99806 * 4 2 1 6 6 N 1.34783 * 119.99602 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00434 * 0.02562 * 5 4 2 8 8 N 1.46500 * 109.47150 * 240.00246 * 2 1 3 9 9 C 1.34772 * 120.00384 * 84.99757 * 8 2 1 10 10 O 1.21290 * 119.99554 * 359.97438 * 9 8 2 11 11 C 1.50696 * 120.00220 * 179.97438 * 9 8 2 12 12 H 1.09006 * 109.46647 * 60.00240 * 11 9 8 13 13 C 1.50695 * 109.47299 * 300.00348 * 11 9 8 14 14 H 1.08000 * 119.99815 * 324.86700 * 13 11 9 15 15 C 1.37874 * 120.00259 * 144.87352 * 13 11 9 16 16 N 1.31519 * 120.00118 * 5.18892 * 15 13 11 17 17 Si 1.86796 * 120.00309 * 185.19354 * 15 13 11 18 18 H 1.48503 * 109.47127 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47328 * 119.99666 * 17 15 13 20 20 H 1.48500 * 109.47146 * 239.99920 * 17 15 13 21 21 C 1.50700 * 109.47349 * 179.97438 * 11 9 8 22 22 C 1.38239 * 119.99771 * 66.00639 * 21 11 9 23 23 C 1.38236 * 119.99708 * 179.78763 * 22 21 11 24 24 C 1.38227 * 120.00288 * 0.44823 * 23 22 21 25 25 C 1.38236 * 120.00127 * 359.81080 * 24 23 22 26 26 C 1.38233 * 120.00401 * 246.28440 * 21 11 9 27 27 H 1.08994 * 109.47086 * 60.00070 * 1 2 3 28 28 H 1.08998 * 109.46845 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46868 * 299.99839 * 1 2 3 30 30 H 1.08998 * 109.46876 * 304.99978 * 4 2 1 31 31 H 1.08997 * 109.46885 * 65.00503 * 4 2 1 32 32 H 0.97001 * 120.00003 * 359.97438 * 6 5 4 33 33 H 0.97000 * 119.99866 * 180.02562 * 6 5 4 34 34 H 0.97004 * 119.99710 * 265.00353 * 8 2 1 35 35 H 0.96996 * 120.00025 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.00000 * 0.02562 * 22 21 11 37 37 H 1.08004 * 119.99473 * 180.27524 * 23 22 21 38 38 H 1.07998 * 120.00408 * 179.82974 * 24 23 22 39 39 H 1.08000 * 120.00320 * 180.02562 * 25 24 23 40 40 H 1.08000 * 119.99792 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3126 6 7 4.2150 -1.1805 2.3342 7 8 4.1450 -0.0204 0.4444 8 7 2.0184 -0.6906 -1.1962 9 6 2.1471 -0.0183 -2.3571 10 8 1.8581 1.1584 -2.4117 11 6 2.6500 -0.7285 -3.5874 12 1 1.9777 -1.5508 -3.8325 13 6 4.0315 -1.2702 -3.3253 14 1 4.7182 -0.7187 -2.7002 15 6 4.4191 -2.4698 -3.8837 16 7 3.6226 -3.0910 -4.7259 17 14 6.0755 -3.2129 -3.4439 18 1 6.7771 -2.3244 -2.4828 19 1 5.8710 -4.5477 -2.8261 20 1 6.8956 -3.3569 -4.6735 21 6 2.6999 0.2396 -4.7413 22 6 3.5833 1.3026 -4.7138 23 6 3.6322 2.1881 -5.7742 24 6 2.7914 2.0161 -6.8577 25 6 1.9042 0.9562 -6.8828 26 6 1.8584 0.0681 -5.8245 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7518 -1.7715 1.2056 32 1 3.7327 -1.6557 3.0288 33 1 5.1817 -1.1118 2.3752 34 1 2.2490 -1.6318 -1.1526 35 1 3.8954 -3.9347 -5.1189 36 1 4.2379 1.4389 -3.8657 37 1 4.3255 3.0160 -5.7547 38 1 2.8276 2.7095 -7.6849 39 1 1.2475 0.8215 -7.7296 40 1 1.1654 -0.7600 -5.8440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521705172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:19 Heat of formation + Delta-G solvation = -65.585680 kcal Electronic energy + Delta-G solvation = -23529.795772 eV Core-core repulsion = 20115.681371 eV Total energy + Delta-G solvation = -3414.114402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.64579 -38.75505 -37.59461 -35.04726 -33.51426 -33.50442 -31.08014 -30.59240 -29.82164 -27.87045 -27.09632 -23.87319 -22.07036 -21.47457 -20.72503 -19.90896 -19.19049 -17.36542 -16.65092 -16.47496 -15.90813 -15.88000 -15.50022 -14.49969 -14.40305 -14.15239 -13.89985 -13.67485 -13.39811 -12.81535 -12.68162 -12.39135 -12.27862 -12.00917 -11.94242 -11.67682 -11.47821 -11.36621 -10.98629 -10.89682 -10.71058 -10.28265 -10.13922 -9.88895 -9.71396 -9.54652 -9.26473 -8.66060 -8.44582 -8.15907 -7.83072 -7.48222 -6.16459 -4.19800 2.49200 2.52170 2.86647 3.23289 3.32710 3.40188 3.61534 3.90176 4.17545 4.39131 4.82861 4.94655 5.00463 5.19587 5.31338 5.49785 5.65571 5.73038 5.81457 5.87951 5.90978 6.00057 6.22850 6.35388 6.44386 6.55442 6.63405 6.73247 6.87967 6.97561 7.09279 7.28309 7.41561 7.42539 7.47726 7.57160 7.78560 7.88851 8.07927 8.21438 8.46220 8.56325 8.87481 9.42176 9.48024 10.92065 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.006786 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.344944 B = 4125.338836 C = 5480.090371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.156 3.844 3 H 0.089 0.911 4 C -0.150 4.150 5 C 0.506 3.494 6 N -0.865 5.865 7 O -0.508 6.508 8 N -0.716 5.716 9 C 0.535 3.465 10 O -0.569 6.569 11 C 0.050 3.950 12 H 0.085 0.915 13 C -0.502 4.502 14 H 0.066 0.934 15 C 0.070 3.930 16 N -0.882 5.882 17 Si 0.895 3.105 18 H -0.270 1.270 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.006 4.006 22 C -0.084 4.084 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.133 4.133 26 C -0.118 4.118 27 H 0.065 0.935 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.396 0.604 33 H 0.398 0.602 34 H 0.400 0.600 35 H 0.264 0.736 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.290 0.718 11.352 12.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.050 3.950 3 H 0.107 0.893 4 C -0.190 4.190 5 C 0.289 3.711 6 N -0.430 5.430 7 O -0.381 6.381 8 N -0.367 5.367 9 C 0.325 3.675 10 O -0.448 6.448 11 C 0.029 3.971 12 H 0.103 0.897 13 C -0.540 4.540 14 H 0.084 0.916 15 C -0.133 4.133 16 N -0.519 5.519 17 Si 0.722 3.278 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.008 4.008 22 C -0.102 4.102 23 C -0.153 4.153 24 C -0.169 4.169 25 C -0.151 4.151 26 C -0.137 4.137 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.115 0.885 32 H 0.224 0.776 33 H 0.229 0.771 34 H 0.234 0.766 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -4.293 1.834 10.517 11.507 hybrid contribution 1.303 -1.322 0.604 1.953 sum -2.989 0.511 11.122 11.528 Atomic orbital electron populations 1.22196 0.95658 1.01836 1.02306 1.20491 0.92912 0.98023 0.83596 0.89322 1.22032 0.92585 1.03677 1.00730 1.20685 0.90533 0.78604 0.81233 1.43925 1.11396 1.59864 1.27837 1.90894 1.69984 1.40293 1.36947 1.45769 1.68268 1.13908 1.08796 1.21462 0.74162 0.86707 0.85188 1.90558 1.51535 1.16853 1.85895 1.18118 0.99331 0.93405 0.86288 0.89668 1.20796 0.97196 1.05040 1.30978 0.91584 1.24961 0.97297 0.96795 0.94274 1.69941 1.36733 1.16809 1.28376 0.86470 0.83925 0.78864 0.78506 1.19434 1.20947 1.20944 1.20029 0.91974 0.93060 0.95689 1.20853 0.98011 0.94053 0.97298 1.20942 0.99840 0.99636 0.94893 1.20770 0.98589 0.99017 0.98475 1.20878 0.99732 0.96130 0.98386 1.20967 0.99571 0.98724 0.94410 0.91614 0.92630 0.92386 0.88111 0.88504 0.77638 0.77148 0.76615 0.92669 0.87073 0.87702 0.87834 0.87681 0.87127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.11 9.48 37.16 0.35 -1.75 16 2 C 0.16 2.42 2.13 -67.93 -0.15 2.27 16 3 H 0.09 1.65 7.39 -51.93 -0.38 1.26 16 4 C -0.15 -1.65 5.24 -27.88 -0.15 -1.80 16 5 C 0.51 7.06 7.96 -10.98 -0.09 6.97 16 6 N -0.87 -8.14 8.87 31.22 0.28 -7.86 16 7 O -0.51 -10.25 16.19 5.56 0.09 -10.16 16 8 N -0.72 -13.76 4.12 -53.80 -0.22 -13.98 16 9 C 0.54 12.54 7.01 -10.99 -0.08 12.47 16 10 O -0.57 -14.57 15.08 5.55 0.08 -14.48 16 11 C 0.05 1.24 2.37 -94.08 -0.22 1.02 16 12 H 0.09 2.22 7.13 -51.93 -0.37 1.85 16 13 C -0.50 -13.35 7.47 -34.44 -0.26 -13.61 16 14 H 0.07 1.87 7.82 -52.49 -0.41 1.46 16 15 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 16 N -0.88 -24.05 12.84 55.43 0.71 -23.34 16 17 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C -0.01 -0.16 4.30 -104.62 -0.45 -0.61 16 22 C -0.08 -2.03 8.31 -39.58 -0.33 -2.36 16 23 C -0.13 -2.86 10.05 -39.59 -0.40 -3.26 16 24 C -0.15 -2.97 10.05 -39.59 -0.40 -3.37 16 25 C -0.13 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.12 -2.73 9.67 -39.58 -0.38 -3.11 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 2.20 8.83 -40.82 -0.36 1.84 16 33 H 0.40 3.70 8.93 -40.82 -0.36 3.33 16 34 H 0.40 7.43 8.49 -40.82 -0.35 7.08 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.11 2.79 7.90 -52.49 -0.41 2.38 16 37 H 0.10 1.92 8.06 -52.48 -0.42 1.50 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.11 2.44 7.96 -52.49 -0.42 2.02 16 LS Contribution 345.13 15.07 5.20 5.20 Total: -1.00 -34.31 345.13 -7.50 -41.81 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -5.58 Total: 15.33 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -3.04 Total: -8.48 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: 0.77 Total: -45.18 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: 0.17 Total: -24.64 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -34.31 -7.50 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521705172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.772 kcal (2) G-P(sol) polarization free energy of solvation -34.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds