Wall clock time and date at job start Tue Mar 31 2020 06:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46845 * 2 1 4 4 C 1.53005 * 109.47126 * 119.99968 * 2 1 3 5 5 C 1.50698 * 109.46676 * 184.99806 * 4 2 1 6 6 N 1.34783 * 119.99602 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00434 * 0.02562 * 5 4 2 8 8 N 1.46500 * 109.47150 * 240.00246 * 2 1 3 9 9 C 1.34772 * 120.00384 * 84.99757 * 8 2 1 10 10 O 1.21290 * 119.99554 * 359.97438 * 9 8 2 11 11 C 1.50696 * 120.00220 * 179.97438 * 9 8 2 12 12 H 1.09006 * 109.46647 * 60.00240 * 11 9 8 13 13 C 1.50695 * 109.47299 * 300.00348 * 11 9 8 14 14 H 1.08000 * 119.99815 * 324.86700 * 13 11 9 15 15 C 1.37874 * 120.00259 * 144.87352 * 13 11 9 16 16 N 1.31519 * 120.00118 * 5.18892 * 15 13 11 17 17 Si 1.86796 * 120.00309 * 185.19354 * 15 13 11 18 18 H 1.48503 * 109.47127 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47328 * 119.99666 * 17 15 13 20 20 H 1.48500 * 109.47146 * 239.99920 * 17 15 13 21 21 C 1.50700 * 109.47349 * 179.97438 * 11 9 8 22 22 C 1.38239 * 119.99771 * 66.00639 * 21 11 9 23 23 C 1.38236 * 119.99708 * 179.78763 * 22 21 11 24 24 C 1.38227 * 120.00288 * 0.44823 * 23 22 21 25 25 C 1.38236 * 120.00127 * 359.81080 * 24 23 22 26 26 C 1.38233 * 120.00401 * 246.28440 * 21 11 9 27 27 H 1.08994 * 109.47086 * 60.00070 * 1 2 3 28 28 H 1.08998 * 109.46845 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46868 * 299.99839 * 1 2 3 30 30 H 1.08998 * 109.46876 * 304.99978 * 4 2 1 31 31 H 1.08997 * 109.46885 * 65.00503 * 4 2 1 32 32 H 0.97001 * 120.00003 * 359.97438 * 6 5 4 33 33 H 0.97000 * 119.99866 * 180.02562 * 6 5 4 34 34 H 0.97004 * 119.99710 * 265.00353 * 8 2 1 35 35 H 0.96996 * 120.00025 * 179.97438 * 16 15 13 36 36 H 1.07997 * 120.00000 * 0.02562 * 22 21 11 37 37 H 1.08004 * 119.99473 * 180.27524 * 23 22 21 38 38 H 1.07998 * 120.00408 * 179.82974 * 24 23 22 39 39 H 1.08000 * 120.00320 * 180.02562 * 25 24 23 40 40 H 1.08000 * 119.99792 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 3.5419 -0.6149 1.3126 6 7 4.2150 -1.1805 2.3342 7 8 4.1450 -0.0204 0.4444 8 7 2.0184 -0.6906 -1.1962 9 6 2.1471 -0.0183 -2.3571 10 8 1.8581 1.1584 -2.4117 11 6 2.6500 -0.7285 -3.5874 12 1 1.9777 -1.5508 -3.8325 13 6 4.0315 -1.2702 -3.3253 14 1 4.7182 -0.7187 -2.7002 15 6 4.4191 -2.4698 -3.8837 16 7 3.6226 -3.0910 -4.7259 17 14 6.0755 -3.2129 -3.4439 18 1 6.7771 -2.3244 -2.4828 19 1 5.8710 -4.5477 -2.8261 20 1 6.8956 -3.3569 -4.6735 21 6 2.6999 0.2396 -4.7413 22 6 3.5833 1.3026 -4.7138 23 6 3.6322 2.1881 -5.7742 24 6 2.7914 2.0161 -6.8577 25 6 1.9042 0.9562 -6.8828 26 6 1.8584 0.0681 -5.8245 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7518 -1.7715 1.2056 32 1 3.7327 -1.6557 3.0288 33 1 5.1817 -1.1118 2.3752 34 1 2.2490 -1.6318 -1.1526 35 1 3.8954 -3.9347 -5.1189 36 1 4.2379 1.4389 -3.8657 37 1 4.3255 3.0160 -5.7547 38 1 2.8276 2.7095 -7.6849 39 1 1.2475 0.8215 -7.7296 40 1 1.1654 -0.7600 -5.8440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521705172.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:18 Heat of formation + Delta-G solvation = -91.460711 kcal Electronic energy + Delta-G solvation = -23530.917798 eV Core-core repulsion = 20115.681371 eV Total energy + Delta-G solvation = -3415.236427 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.06865 -40.27660 -39.24996 -36.49042 -35.49591 -34.56115 -32.95022 -32.07496 -31.53990 -29.05051 -28.76942 -25.84033 -23.47508 -23.18687 -22.17931 -21.12792 -20.92862 -18.71447 -18.33006 -17.64654 -17.59043 -17.43304 -16.98637 -16.28916 -15.93304 -15.73011 -15.42210 -15.21829 -14.91903 -14.46265 -14.09265 -14.05644 -13.86283 -13.51762 -13.37019 -13.10301 -12.90139 -12.85610 -12.77364 -12.75812 -12.20080 -11.94207 -11.90157 -11.66497 -11.25531 -10.91598 -10.68457 -10.54460 -10.33909 -9.75011 -9.56133 -9.24987 -8.21248 -6.30453 0.75237 0.80871 1.34681 1.38653 1.51218 1.80046 2.06494 2.43161 2.65944 2.70802 3.06875 3.27443 3.74157 4.08308 4.21914 4.29329 4.31832 4.39520 4.48314 4.55689 4.63317 4.69414 4.74136 4.86968 4.89108 4.97582 5.10767 5.18103 5.37234 5.37996 5.44720 5.66703 5.77522 5.81686 5.88933 5.97879 5.99703 6.25683 6.41350 6.59558 6.74201 6.88944 7.35194 7.51896 7.68353 8.86948 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.012314 B = 0.006786 C = 0.005108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2273.344944 B = 4125.338836 C = 5480.090371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.148 3.852 3 H 0.050 0.950 4 C -0.137 4.137 5 C 0.498 3.502 6 N -0.841 5.841 7 O -0.585 6.585 8 N -0.705 5.705 9 C 0.530 3.470 10 O -0.599 6.599 11 C 0.052 3.948 12 H 0.067 0.933 13 C -0.505 4.505 14 H 0.038 0.962 15 C 0.034 3.966 16 N -0.903 5.903 17 Si 0.952 3.048 18 H -0.281 1.281 19 H -0.265 1.265 20 H -0.283 1.283 21 C -0.036 4.036 22 C -0.114 4.114 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.127 4.127 26 C -0.140 4.140 27 H 0.030 0.970 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.148 0.852 31 H 0.129 0.871 32 H 0.419 0.581 33 H 0.401 0.599 34 H 0.402 0.598 35 H 0.267 0.733 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 0.103 12.057 13.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.068 0.932 4 C -0.177 4.177 5 C 0.283 3.717 6 N -0.406 5.406 7 O -0.463 6.463 8 N -0.354 5.354 9 C 0.319 3.681 10 O -0.482 6.482 11 C 0.031 3.969 12 H 0.085 0.915 13 C -0.543 4.543 14 H 0.056 0.944 15 C -0.167 4.167 16 N -0.541 5.541 17 Si 0.778 3.222 18 H -0.206 1.206 19 H -0.190 1.190 20 H -0.209 1.209 21 C -0.037 4.037 22 C -0.132 4.132 23 C -0.154 4.154 24 C -0.161 4.161 25 C -0.145 4.145 26 C -0.159 4.159 27 H 0.049 0.951 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.166 0.834 31 H 0.147 0.853 32 H 0.251 0.749 33 H 0.231 0.769 34 H 0.236 0.764 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.151 0.849 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.039 1.155 11.319 12.444 hybrid contribution 1.515 -1.083 0.436 1.913 sum -3.524 0.072 11.755 12.272 Atomic orbital electron populations 1.22109 0.93266 1.03198 1.02399 1.20751 0.94682 0.96361 0.83947 0.93170 1.22046 0.90444 1.05365 0.99873 1.21267 0.91867 0.77638 0.80890 1.43725 1.11655 1.58215 1.26991 1.90885 1.71532 1.43894 1.40015 1.45719 1.66893 1.13855 1.08953 1.21245 0.74322 0.86371 0.86181 1.90514 1.53196 1.17904 1.86546 1.18006 0.98071 0.93175 0.87647 0.91516 1.20656 0.97584 1.05255 1.30767 0.94368 1.25530 1.00139 0.96929 0.94123 1.70018 1.37985 1.17143 1.28912 0.85605 0.80195 0.78527 0.77909 1.20634 1.18996 1.20854 1.20138 0.93382 0.93792 0.96360 1.20806 0.98675 0.95690 0.98057 1.21295 1.00418 0.99424 0.94244 1.21262 0.96882 0.99093 0.98825 1.21323 0.99801 0.95089 0.98309 1.21132 0.99797 0.99853 0.95073 0.95068 0.90538 0.88745 0.83428 0.85314 0.74945 0.76912 0.76354 0.92353 0.89818 0.84928 0.83311 0.83884 0.87256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 9.48 71.98 0.68 -3.07 16 2 C 0.15 4.58 2.13 44.99 0.10 4.68 16 3 H 0.05 1.96 7.39 -2.39 -0.02 1.95 16 4 C -0.14 -2.70 5.24 29.85 0.16 -2.54 16 5 C 0.50 13.57 7.96 87.66 0.70 14.27 16 6 N -0.84 -14.19 8.87 -173.53 -1.54 -15.73 16 7 O -0.58 -24.69 16.19 -3.03 -0.05 -24.74 16 8 N -0.70 -28.25 4.12 -442.52 -1.82 -30.07 16 9 C 0.53 26.49 7.01 87.66 0.61 27.11 16 10 O -0.60 -32.82 15.08 -3.06 -0.05 -32.87 16 11 C 0.05 2.78 2.37 -13.04 -0.03 2.74 16 12 H 0.07 3.70 7.13 -2.38 -0.02 3.69 16 13 C -0.50 -28.32 7.47 25.60 0.19 -28.12 16 14 H 0.04 2.32 7.82 -2.91 -0.02 2.29 16 15 C 0.03 1.87 5.45 84.65 0.46 2.33 16 16 N -0.90 -50.24 12.84 21.45 0.28 -49.97 16 17 Si 0.95 43.95 29.54 68.60 2.03 45.97 16 18 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 19 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 20 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 21 C -0.04 -1.86 4.30 -19.87 -0.09 -1.95 16 22 C -0.11 -5.78 8.31 22.27 0.18 -5.60 16 23 C -0.14 -5.69 10.05 22.27 0.22 -5.47 16 24 C -0.14 -5.28 10.05 22.27 0.22 -5.06 16 25 C -0.13 -4.97 10.05 22.27 0.22 -4.75 16 26 C -0.14 -6.58 9.67 22.27 0.22 -6.36 16 27 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 30 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.42 3.23 8.83 -92.71 -0.82 2.41 16 33 H 0.40 6.95 8.93 -92.71 -0.83 6.12 16 34 H 0.40 15.43 8.49 -92.71 -0.79 14.65 16 35 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.08 4.57 7.90 -2.91 -0.02 4.55 16 37 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 38 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 39 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.11 4.99 7.96 -2.91 -0.02 4.97 16 Total: -1.00 -81.58 345.13 1.35 -80.23 By element: Atomic # 1 Polarization: 40.32 SS G_CDS: -1.35 Total: 38.96 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 3.86 Total: -11.79 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.09 Total: -95.77 kcal Atomic # 8 Polarization: -57.51 SS G_CDS: -0.10 Total: -57.60 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -81.58 1.35 -80.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521705172.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.229 kcal (2) G-P(sol) polarization free energy of solvation -81.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds