Wall clock time and date at job start Tue Mar 31 2020 06:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46718 * 2 1 4 4 C 1.53000 * 109.47092 * 119.99183 * 2 1 3 5 5 C 1.50694 * 109.47429 * 184.99873 * 4 2 1 6 6 N 1.34775 * 120.00658 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99860 * 0.02562 * 5 4 2 8 8 N 1.46499 * 109.47266 * 239.99473 * 2 1 3 9 9 C 1.34773 * 119.99713 * 84.99697 * 8 2 1 10 10 O 1.21278 * 120.00577 * 0.02562 * 9 8 2 11 11 C 1.50701 * 119.99901 * 179.97438 * 9 8 2 12 12 H 1.09001 * 109.47160 * 300.00469 * 11 9 8 13 13 C 1.50698 * 109.46971 * 60.00363 * 11 9 8 14 14 H 1.07996 * 120.00538 * 33.94038 * 13 11 9 15 15 C 1.37883 * 119.99971 * 213.94599 * 13 11 9 16 16 N 1.31517 * 120.00017 * 6.38749 * 15 13 11 17 17 Si 1.86802 * 119.99930 * 186.39388 * 15 13 11 18 18 H 1.48500 * 109.46953 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47061 * 119.99550 * 17 15 13 20 20 H 1.48503 * 109.46770 * 239.99416 * 17 15 13 21 21 C 1.50700 * 109.47405 * 180.02562 * 11 9 8 22 22 C 1.38237 * 119.99890 * 293.85198 * 21 11 9 23 23 C 1.38233 * 119.99867 * 179.81243 * 22 21 11 24 24 C 1.38236 * 120.00215 * 0.38913 * 23 22 21 25 25 C 1.38236 * 119.99648 * 359.86088 * 24 23 22 26 26 C 1.38235 * 120.00317 * 359.95688 * 25 24 23 27 27 H 1.09001 * 109.46834 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47093 * 300.00620 * 1 2 3 29 29 H 1.09002 * 109.46739 * 60.00507 * 1 2 3 30 30 H 1.08994 * 109.47319 * 305.00445 * 4 2 1 31 31 H 1.09010 * 109.46750 * 65.00181 * 4 2 1 32 32 H 0.97005 * 119.99329 * 0.02562 * 6 5 4 33 33 H 0.96994 * 120.00773 * 180.02562 * 6 5 4 34 34 H 0.97000 * 119.99770 * 265.00577 * 8 2 1 35 35 H 0.96996 * 119.99767 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.99989 * 359.97438 * 22 21 11 37 37 H 1.08005 * 119.99832 * 180.23045 * 23 22 21 38 38 H 1.07995 * 120.00133 * 179.83671 * 24 23 22 39 39 H 1.07997 * 119.99553 * 179.97438 * 25 24 23 40 40 H 1.07992 * 119.99896 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3129 6 7 4.2150 -1.1802 2.3345 7 8 4.1450 -0.0203 0.4445 8 7 2.0184 -0.6907 -1.1961 9 6 2.1471 -0.0184 -2.3571 10 8 1.8590 1.1584 -2.4116 11 6 2.6500 -0.7288 -3.5873 12 1 3.6493 -1.1206 -3.3977 13 6 1.7207 -1.8657 -3.9261 14 1 0.6614 -1.7718 -3.7377 15 6 2.2228 -3.0260 -4.4764 16 7 3.5226 -3.1912 -4.5898 17 14 1.0567 -4.3631 -5.0611 18 1 -0.3454 -3.9359 -4.8232 19 1 1.2631 -4.5999 -6.5125 20 1 1.3258 -5.6168 -4.3119 21 6 2.7011 0.2395 -4.7409 22 6 1.5308 0.7712 -5.2495 23 6 1.5779 1.6624 -6.3051 24 6 2.7948 2.0158 -6.8575 25 6 3.9648 1.4802 -6.3523 26 6 3.9179 0.5919 -5.2942 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6054 -0.2615 2.1370 31 1 1.7517 -1.7714 1.2058 32 1 3.7326 -1.6560 3.0287 33 1 5.1816 -1.1115 2.3756 34 1 2.2490 -1.6319 -1.1524 35 1 3.8757 -4.0072 -4.9773 36 1 0.5798 0.4922 -4.8203 37 1 0.6638 2.0806 -6.7000 38 1 2.8315 2.7100 -7.6839 39 1 4.9155 1.7560 -6.7841 40 1 4.8319 0.1731 -4.8998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521705173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:21 Heat of formation + Delta-G solvation = -66.815427 kcal Electronic energy + Delta-G solvation = -23398.404787 eV Core-core repulsion = 19984.237060 eV Total energy + Delta-G solvation = -3414.167727 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69090 -38.78508 -37.61165 -35.04134 -33.59150 -33.53824 -31.09911 -30.59750 -29.85069 -27.86129 -27.12356 -23.89255 -22.09592 -21.49457 -20.76402 -19.93004 -19.19073 -17.41424 -16.68417 -16.54180 -15.95890 -15.91884 -15.47461 -14.56926 -14.44944 -14.01160 -13.96262 -13.86172 -13.28212 -12.83678 -12.78958 -12.40983 -12.24954 -11.99660 -11.94638 -11.64720 -11.49430 -11.35393 -11.04723 -10.92410 -10.68979 -10.32176 -10.18814 -9.88828 -9.80464 -9.63557 -9.34533 -8.69139 -8.42991 -8.13363 -7.85903 -7.51609 -6.20933 -4.25583 2.46354 2.49367 2.77579 3.20917 3.30487 3.33834 3.55430 3.94595 4.15797 4.34774 4.81578 4.91769 4.97674 5.15879 5.30501 5.49812 5.69840 5.76236 5.79405 5.87620 5.92673 5.98425 6.24421 6.33664 6.50256 6.54667 6.62219 6.71071 6.80344 6.98340 7.07222 7.31070 7.34059 7.44143 7.45153 7.54199 7.69638 7.85737 8.06038 8.17111 8.37129 8.58209 8.79676 9.37934 9.48468 10.87690 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.006201 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.461547 B = 4514.315896 C = 5571.293140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.157 3.843 3 H 0.088 0.912 4 C -0.151 4.151 5 C 0.509 3.491 6 N -0.864 5.864 7 O -0.518 6.518 8 N -0.716 5.716 9 C 0.537 3.463 10 O -0.571 6.571 11 C 0.047 3.953 12 H 0.091 0.909 13 C -0.511 4.511 14 H 0.062 0.938 15 C 0.073 3.927 16 N -0.879 5.879 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.283 1.283 21 C -0.009 4.009 22 C -0.085 4.085 23 C -0.135 4.135 24 C -0.150 4.150 25 C -0.132 4.132 26 C -0.120 4.120 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.397 0.603 33 H 0.398 0.602 34 H 0.401 0.599 35 H 0.265 0.735 36 H 0.111 0.889 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.967 1.363 11.518 11.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.051 3.949 3 H 0.106 0.894 4 C -0.191 4.191 5 C 0.293 3.707 6 N -0.428 5.428 7 O -0.392 6.392 8 N -0.367 5.367 9 C 0.327 3.673 10 O -0.450 6.450 11 C 0.026 3.974 12 H 0.108 0.892 13 C -0.549 4.549 14 H 0.080 0.920 15 C -0.131 4.131 16 N -0.515 5.515 17 Si 0.723 3.277 18 H -0.195 1.195 19 H -0.208 1.208 20 H -0.209 1.209 21 C -0.010 4.010 22 C -0.103 4.103 23 C -0.153 4.153 24 C -0.168 4.168 25 C -0.150 4.150 26 C -0.138 4.138 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.225 0.775 33 H 0.229 0.771 34 H 0.235 0.765 35 H 0.075 0.925 36 H 0.129 0.871 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.809 2.508 10.743 11.179 hybrid contribution -0.243 -1.626 0.052 1.645 sum -2.052 0.882 10.795 11.023 Atomic orbital electron populations 1.22187 0.95552 1.02009 1.02203 1.20484 0.93139 0.97817 0.83507 0.89400 1.22052 0.92316 1.03889 1.00878 1.20720 0.90612 0.78228 0.81118 1.43926 1.11418 1.59657 1.27827 1.90857 1.70152 1.40745 1.37411 1.45759 1.68389 1.13840 1.08705 1.21386 0.75015 0.86213 0.84719 1.90553 1.51936 1.16889 1.85608 1.18130 1.00996 0.92071 0.86182 0.89160 1.20724 0.93409 0.97440 1.43307 0.91969 1.24972 0.95125 0.98150 0.94875 1.69913 1.11199 1.27106 1.43275 0.86477 0.81249 0.81208 0.78789 1.19514 1.20754 1.20933 1.20076 0.91946 0.92533 0.96437 1.20816 0.98379 0.95775 0.95307 1.20944 0.96896 0.99582 0.97915 1.20780 0.93061 1.02006 1.00971 1.20892 0.97279 0.98930 0.97906 1.21014 0.97779 0.97875 0.97113 0.92482 0.92546 0.91537 0.87996 0.88324 0.77491 0.77131 0.76514 0.92503 0.87131 0.87658 0.87779 0.87619 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.16 0.35 -1.86 16 2 C 0.16 2.46 2.13 -67.93 -0.15 2.31 16 3 H 0.09 1.63 7.39 -51.93 -0.38 1.24 16 4 C -0.15 -1.65 5.24 -27.89 -0.15 -1.79 16 5 C 0.51 6.78 7.96 -10.99 -0.09 6.69 16 6 N -0.86 -7.45 8.87 31.22 0.28 -7.18 16 7 O -0.52 -9.95 16.19 5.55 0.09 -9.86 16 8 N -0.72 -13.95 4.12 -53.81 -0.22 -14.17 16 9 C 0.54 12.72 7.01 -10.99 -0.08 12.64 16 10 O -0.57 -14.70 15.08 5.56 0.08 -14.62 16 11 C 0.05 1.19 2.44 -94.08 -0.23 0.96 16 12 H 0.09 2.47 7.00 -51.93 -0.36 2.10 16 13 C -0.51 -13.14 7.46 -34.44 -0.26 -13.40 16 14 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 15 C 0.07 1.90 5.45 -17.82 -0.10 1.81 16 16 N -0.88 -23.86 12.78 55.43 0.71 -23.15 16 17 Si 0.90 20.29 29.54 -169.99 -5.02 15.27 16 18 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 21 C -0.01 -0.22 4.30 -104.62 -0.45 -0.67 16 22 C -0.08 -1.99 8.31 -39.58 -0.33 -2.32 16 23 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 24 C -0.15 -2.94 10.05 -39.58 -0.40 -3.34 16 25 C -0.13 -2.71 10.05 -39.58 -0.40 -3.11 16 26 C -0.12 -2.80 9.67 -39.58 -0.38 -3.18 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.40 1.98 8.83 -40.82 -0.36 1.62 16 33 H 0.40 3.29 8.93 -40.82 -0.36 2.93 16 34 H 0.40 7.60 8.49 -40.82 -0.35 7.25 16 35 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.11 2.61 7.89 -52.49 -0.41 2.20 16 37 H 0.11 1.86 8.06 -52.48 -0.42 1.44 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.27 16 39 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 40 H 0.11 2.56 7.95 -52.49 -0.42 2.14 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -33.80 345.02 -7.50 -41.31 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: -5.58 Total: 15.67 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: -3.04 Total: -8.47 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.76 Total: -44.50 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.17 Total: -24.48 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.80 -7.50 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521705173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.510 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds