Wall clock time and date at job start Tue Mar 31 2020 06:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46718 * 2 1 4 4 C 1.53000 * 109.47092 * 119.99183 * 2 1 3 5 5 C 1.50694 * 109.47429 * 184.99873 * 4 2 1 6 6 N 1.34775 * 120.00658 * 180.02562 * 5 4 2 7 7 O 1.21290 * 119.99860 * 0.02562 * 5 4 2 8 8 N 1.46499 * 109.47266 * 239.99473 * 2 1 3 9 9 C 1.34773 * 119.99713 * 84.99697 * 8 2 1 10 10 O 1.21278 * 120.00577 * 0.02562 * 9 8 2 11 11 C 1.50701 * 119.99901 * 179.97438 * 9 8 2 12 12 H 1.09001 * 109.47160 * 300.00469 * 11 9 8 13 13 C 1.50698 * 109.46971 * 60.00363 * 11 9 8 14 14 H 1.07996 * 120.00538 * 33.94038 * 13 11 9 15 15 C 1.37883 * 119.99971 * 213.94599 * 13 11 9 16 16 N 1.31517 * 120.00017 * 6.38749 * 15 13 11 17 17 Si 1.86802 * 119.99930 * 186.39388 * 15 13 11 18 18 H 1.48500 * 109.46953 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47061 * 119.99550 * 17 15 13 20 20 H 1.48503 * 109.46770 * 239.99416 * 17 15 13 21 21 C 1.50700 * 109.47405 * 180.02562 * 11 9 8 22 22 C 1.38237 * 119.99890 * 293.85198 * 21 11 9 23 23 C 1.38233 * 119.99867 * 179.81243 * 22 21 11 24 24 C 1.38236 * 120.00215 * 0.38913 * 23 22 21 25 25 C 1.38236 * 119.99648 * 359.86088 * 24 23 22 26 26 C 1.38235 * 120.00317 * 359.95688 * 25 24 23 27 27 H 1.09001 * 109.46834 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47093 * 300.00620 * 1 2 3 29 29 H 1.09002 * 109.46739 * 60.00507 * 1 2 3 30 30 H 1.08994 * 109.47319 * 305.00445 * 4 2 1 31 31 H 1.09010 * 109.46750 * 65.00181 * 4 2 1 32 32 H 0.97005 * 119.99329 * 0.02562 * 6 5 4 33 33 H 0.96994 * 120.00773 * 180.02562 * 6 5 4 34 34 H 0.97000 * 119.99770 * 265.00577 * 8 2 1 35 35 H 0.96996 * 119.99767 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.99989 * 359.97438 * 22 21 11 37 37 H 1.08005 * 119.99832 * 180.23045 * 23 22 21 38 38 H 1.07995 * 120.00133 * 179.83671 * 24 23 22 39 39 H 1.07997 * 119.99553 * 179.97438 * 25 24 23 40 40 H 1.07992 * 119.99896 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5419 -0.6148 1.3129 6 7 4.2150 -1.1802 2.3345 7 8 4.1450 -0.0203 0.4445 8 7 2.0184 -0.6907 -1.1961 9 6 2.1471 -0.0184 -2.3571 10 8 1.8590 1.1584 -2.4116 11 6 2.6500 -0.7288 -3.5873 12 1 3.6493 -1.1206 -3.3977 13 6 1.7207 -1.8657 -3.9261 14 1 0.6614 -1.7718 -3.7377 15 6 2.2228 -3.0260 -4.4764 16 7 3.5226 -3.1912 -4.5898 17 14 1.0567 -4.3631 -5.0611 18 1 -0.3454 -3.9359 -4.8232 19 1 1.2631 -4.5999 -6.5125 20 1 1.3258 -5.6168 -4.3119 21 6 2.7011 0.2395 -4.7409 22 6 1.5308 0.7712 -5.2495 23 6 1.5779 1.6624 -6.3051 24 6 2.7948 2.0158 -6.8575 25 6 3.9648 1.4802 -6.3523 26 6 3.9179 0.5919 -5.2942 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.6054 -0.2615 2.1370 31 1 1.7517 -1.7714 1.2058 32 1 3.7326 -1.6560 3.0287 33 1 5.1816 -1.1115 2.3756 34 1 2.2490 -1.6319 -1.1524 35 1 3.8757 -4.0072 -4.9773 36 1 0.5798 0.4922 -4.8203 37 1 0.6638 2.0806 -6.7000 38 1 2.8315 2.7100 -7.6839 39 1 4.9155 1.7560 -6.7841 40 1 4.8319 0.1731 -4.8998 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521705173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:20 Heat of formation + Delta-G solvation = -92.142419 kcal Electronic energy + Delta-G solvation = -23399.503048 eV Core-core repulsion = 19984.237060 eV Total energy + Delta-G solvation = -3415.265988 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.07929 -40.30264 -39.26250 -36.49272 -35.48947 -34.58777 -32.95455 -32.08050 -31.55569 -29.04204 -28.79696 -25.83003 -23.50085 -23.18933 -22.19483 -21.14118 -20.93528 -18.68517 -18.35866 -17.69255 -17.61162 -17.44510 -16.96728 -16.25956 -15.94303 -15.69179 -15.51902 -15.23133 -14.82337 -14.58505 -14.10531 -14.06694 -13.83390 -13.51243 -13.31172 -13.12563 -12.92065 -12.86011 -12.77594 -12.71409 -12.15861 -11.97424 -11.89220 -11.65465 -11.25864 -10.95804 -10.69626 -10.57474 -10.32380 -9.74638 -9.57800 -9.26831 -8.20141 -6.31347 0.73413 0.79369 1.40485 1.44468 1.55159 1.75525 2.08952 2.43832 2.63870 2.69064 3.08693 3.26790 3.73401 4.07163 4.20298 4.28378 4.31568 4.38753 4.47756 4.53701 4.62801 4.69175 4.74419 4.85893 4.88984 4.96337 5.13724 5.17427 5.36205 5.38217 5.44911 5.64860 5.76136 5.80408 5.88209 5.97117 5.98096 6.24160 6.39397 6.56557 6.74564 6.88579 7.35144 7.47974 7.68308 8.88798 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011976 B = 0.006201 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2337.461547 B = 4514.315896 C = 5571.293140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.148 3.852 3 H 0.053 0.947 4 C -0.139 4.139 5 C 0.502 3.498 6 N -0.838 5.838 7 O -0.591 6.591 8 N -0.705 5.705 9 C 0.531 3.469 10 O -0.600 6.600 11 C 0.049 3.951 12 H 0.056 0.944 13 C -0.512 4.512 14 H 0.056 0.944 15 C 0.030 3.970 16 N -0.910 5.910 17 Si 0.959 3.041 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.271 1.271 21 C -0.040 4.040 22 C -0.109 4.109 23 C -0.133 4.133 24 C -0.143 4.143 25 C -0.129 4.129 26 C -0.149 4.149 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.028 0.972 30 H 0.149 0.851 31 H 0.128 0.872 32 H 0.419 0.581 33 H 0.402 0.598 34 H 0.402 0.598 35 H 0.266 0.734 36 H 0.097 0.903 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.139 0.861 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.377 1.010 12.206 12.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.043 3.957 3 H 0.071 0.929 4 C -0.179 4.179 5 C 0.288 3.712 6 N -0.403 5.403 7 O -0.470 6.470 8 N -0.354 5.354 9 C 0.320 3.680 10 O -0.482 6.482 11 C 0.028 3.972 12 H 0.074 0.926 13 C -0.549 4.549 14 H 0.074 0.926 15 C -0.171 4.171 16 N -0.547 5.547 17 Si 0.784 3.216 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.197 1.197 21 C -0.041 4.041 22 C -0.127 4.127 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.167 4.167 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.048 0.952 30 H 0.167 0.833 31 H 0.146 0.854 32 H 0.251 0.749 33 H 0.233 0.767 34 H 0.236 0.764 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.157 0.843 38 H 0.168 0.832 39 H 0.157 0.843 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.237 2.102 11.534 12.163 hybrid contribution 0.246 -1.453 -0.090 1.477 sum -2.991 0.648 11.444 11.846 Atomic orbital electron populations 1.22106 0.93613 1.03034 1.02272 1.20742 0.94578 0.96404 0.83937 0.92871 1.22050 0.90587 1.05358 0.99858 1.21204 0.91737 0.77412 0.80885 1.43710 1.11745 1.57945 1.26891 1.90848 1.71580 1.44228 1.40346 1.45720 1.67034 1.13750 1.08906 1.21188 0.75199 0.85909 0.85678 1.90508 1.53578 1.17866 1.86240 1.18006 0.99043 0.92509 0.87622 0.92570 1.20767 0.92990 0.97878 1.43293 0.92579 1.25679 0.96432 1.00130 0.94876 1.70039 1.12781 1.27758 1.44165 0.85498 0.79401 0.78882 0.77857 1.18988 1.21227 1.19675 1.20190 0.93197 0.93758 0.96936 1.20846 0.97290 0.97555 0.96998 1.21355 0.99073 0.98135 0.96526 1.21283 0.91885 1.01567 1.01317 1.21288 0.99521 0.97372 0.96493 1.21134 0.96939 0.99721 0.98937 0.90879 0.88706 0.95229 0.83333 0.85419 0.74889 0.76713 0.76355 0.92464 0.88453 0.84276 0.83235 0.84286 0.88288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.48 71.98 0.68 -3.32 16 2 C 0.15 4.66 2.13 44.99 0.10 4.75 16 3 H 0.05 2.06 7.39 -2.39 -0.02 2.04 16 4 C -0.14 -2.70 5.24 29.85 0.16 -2.54 16 5 C 0.50 12.99 7.96 87.66 0.70 13.69 16 6 N -0.84 -12.85 8.87 -173.53 -1.54 -14.39 16 7 O -0.59 -23.70 16.19 -3.06 -0.05 -23.75 16 8 N -0.70 -28.63 4.12 -442.53 -1.82 -30.45 16 9 C 0.53 26.76 7.01 87.66 0.61 27.38 16 10 O -0.60 -32.87 15.08 -3.02 -0.05 -32.91 16 11 C 0.05 2.66 2.44 -13.03 -0.03 2.62 16 12 H 0.06 3.34 7.00 -2.39 -0.02 3.32 16 13 C -0.51 -27.37 7.46 25.60 0.19 -27.18 16 14 H 0.06 3.00 7.82 -2.91 -0.02 2.98 16 15 C 0.03 1.60 5.45 84.66 0.46 2.06 16 16 N -0.91 -51.14 12.78 21.45 0.27 -50.87 16 17 Si 0.96 42.02 29.54 68.60 2.03 44.04 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 20 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 21 C -0.04 -2.08 4.30 -19.87 -0.09 -2.16 16 22 C -0.11 -5.26 8.31 22.27 0.19 -5.07 16 23 C -0.13 -5.33 10.05 22.27 0.22 -5.10 16 24 C -0.14 -5.23 10.05 22.27 0.22 -5.01 16 25 C -0.13 -5.17 10.05 22.27 0.22 -4.95 16 26 C -0.15 -7.26 9.67 22.27 0.22 -7.05 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.15 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.13 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.42 2.77 8.83 -92.70 -0.82 1.95 16 33 H 0.40 6.14 8.93 -92.71 -0.83 5.32 16 34 H 0.40 15.81 8.49 -92.71 -0.79 15.02 16 35 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 36 H 0.10 4.82 7.89 -2.91 -0.02 4.80 16 37 H 0.14 4.53 8.06 -2.91 -0.02 4.51 16 38 H 0.15 4.14 8.06 -2.91 -0.02 4.11 16 39 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 40 H 0.10 4.89 7.95 -2.91 -0.02 4.87 16 Total: -1.00 -80.22 345.02 1.34 -78.88 By element: Atomic # 1 Polarization: 42.68 SS G_CDS: -1.35 Total: 41.33 kcal Atomic # 6 Polarization: -15.73 SS G_CDS: 3.85 Total: -11.88 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -3.09 Total: -95.71 kcal Atomic # 8 Polarization: -56.57 SS G_CDS: -0.10 Total: -56.66 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.04 kcal Total: -80.22 1.34 -78.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521705173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.266 kcal (2) G-P(sol) polarization free energy of solvation -80.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds