Wall clock time and date at job start Tue Mar 31 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46915 * 2 1 4 4 C 1.52994 * 109.47424 * 240.00059 * 2 1 3 5 5 C 1.50700 * 109.47392 * 174.99614 * 4 2 1 6 6 N 1.34771 * 119.99963 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99629 * 0.02562 * 5 4 2 8 8 N 1.46501 * 109.47295 * 119.99580 * 2 1 3 9 9 C 1.34775 * 120.00319 * 275.00820 * 8 2 1 10 10 O 1.21275 * 120.00077 * 359.97438 * 9 8 2 11 11 C 1.50702 * 119.99896 * 179.97438 * 9 8 2 12 12 H 1.08998 * 109.47203 * 25.91595 * 11 9 8 13 13 C 1.50697 * 109.47015 * 265.91176 * 11 9 8 14 14 H 1.07998 * 119.99867 * 304.97255 * 13 11 9 15 15 C 1.37878 * 119.99855 * 124.97093 * 13 11 9 16 16 N 1.31514 * 119.99756 * 186.05733 * 15 13 11 17 17 Si 1.86796 * 119.99995 * 6.33541 * 15 13 11 18 18 H 1.48494 * 109.47292 * 271.38432 * 17 15 13 19 19 H 1.48503 * 109.47222 * 31.38970 * 17 15 13 20 20 H 1.48509 * 109.46834 * 151.38442 * 17 15 13 21 21 C 1.50702 * 109.46959 * 145.91174 * 11 9 8 22 22 C 1.38230 * 120.00167 * 67.35297 * 21 11 9 23 23 C 1.38236 * 120.00342 * 179.78289 * 22 21 11 24 24 C 1.38238 * 119.99681 * 0.44914 * 23 22 21 25 25 C 1.38229 * 119.99807 * 359.80182 * 24 23 22 26 26 C 1.38229 * 120.00395 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47266 * 299.99954 * 1 2 3 29 29 H 1.09004 * 109.47478 * 60.00170 * 1 2 3 30 30 H 1.09003 * 109.47485 * 295.00138 * 4 2 1 31 31 H 1.09005 * 109.47220 * 54.99594 * 4 2 1 32 32 H 0.97004 * 120.00413 * 0.02562 * 6 5 4 33 33 H 0.97010 * 120.00026 * 180.02562 * 6 5 4 34 34 H 0.97000 * 119.99660 * 94.99856 * 8 2 1 35 35 H 0.97000 * 120.00264 * 180.27500 * 16 15 13 36 36 H 1.08000 * 119.99969 * 359.97438 * 22 21 11 37 37 H 1.08001 * 120.00107 * 180.27298 * 23 22 21 38 38 H 1.07992 * 119.99897 * 179.83402 * 24 23 22 39 39 H 1.08009 * 119.99803 * 180.02562 * 25 24 23 40 40 H 1.08003 * 120.00401 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 7 4.2149 -1.1803 -2.3342 7 8 4.1450 -0.0209 -0.4440 8 7 2.0183 -0.6905 1.1962 9 6 2.1470 -0.0182 2.3572 10 8 1.8588 1.1586 2.4116 11 6 2.6488 -0.7287 3.5878 12 1 3.2675 -1.5757 3.2914 13 6 1.4765 -1.2216 4.3964 14 1 0.7083 -0.5304 4.7102 15 6 1.3848 -2.5548 4.7356 16 7 0.3064 -3.0076 5.3369 17 14 2.7955 -3.7163 4.3480 18 1 2.6152 -4.2764 2.9846 19 1 4.0800 -2.9739 4.4124 20 1 2.8127 -4.8221 5.3392 21 6 3.4675 0.2247 4.4195 22 6 2.8585 1.3000 5.0387 23 6 3.6087 2.1720 5.8054 24 6 4.9696 1.9739 5.9451 25 6 5.5795 0.9015 5.3217 26 6 4.8286 0.0269 4.5589 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1370 32 1 3.7326 -1.6556 -3.0288 33 1 5.1818 -1.1122 -2.3749 34 1 2.2490 -1.6317 1.1527 35 1 0.2434 -3.9448 5.5791 36 1 1.7959 1.4572 4.9261 37 1 3.1320 3.0097 6.2927 38 1 5.5562 2.6566 6.5419 39 1 6.6428 0.7465 5.4313 40 1 5.3052 -0.8108 4.0714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521705175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:25 Heat of formation + Delta-G solvation = -63.226693 kcal Electronic energy + Delta-G solvation = -23504.717160 eV Core-core repulsion = 20090.705052 eV Total energy + Delta-G solvation = -3414.012108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81624 -38.96503 -37.78242 -35.16070 -33.70169 -33.48077 -31.53286 -30.77907 -30.03097 -27.93075 -27.55634 -23.68615 -22.15351 -21.73771 -20.89230 -20.03946 -19.31270 -17.51302 -17.06230 -16.64641 -16.16032 -16.06760 -15.64035 -14.69406 -14.61995 -14.10625 -14.05355 -13.76794 -13.43636 -12.90999 -12.88020 -12.60368 -12.53460 -12.12141 -12.02594 -11.94056 -11.74132 -11.52805 -11.05434 -11.03132 -10.74510 -10.38167 -10.03431 -9.92194 -9.91185 -9.74857 -9.42974 -8.91839 -8.57256 -8.28708 -8.03897 -7.70852 -6.24753 -4.25385 2.23423 2.30527 2.65754 3.12496 3.25810 3.28548 3.45005 3.85711 3.98264 4.25207 4.72250 4.72539 4.88864 5.12819 5.20132 5.42979 5.62577 5.65852 5.68905 5.73800 5.79722 5.91809 6.06927 6.15705 6.28575 6.39346 6.49629 6.51228 6.57199 6.69420 6.83737 6.96485 7.23211 7.25906 7.26219 7.35575 7.39584 7.69967 7.89232 8.24803 8.25656 8.46057 8.81733 9.31954 9.33705 10.86914 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.006726 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.927124 B = 4162.041779 C = 5035.909832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.158 3.842 3 H 0.090 0.910 4 C -0.152 4.152 5 C 0.508 3.492 6 N -0.863 5.863 7 O -0.519 6.519 8 N -0.725 5.725 9 C 0.542 3.458 10 O -0.557 6.557 11 C 0.033 3.967 12 H 0.055 0.945 13 C -0.499 4.499 14 H 0.084 0.916 15 C 0.080 3.920 16 N -0.884 5.884 17 Si 0.867 3.133 18 H -0.274 1.274 19 H -0.259 1.259 20 H -0.284 1.284 21 C -0.033 4.033 22 C -0.070 4.070 23 C -0.133 4.133 24 C -0.142 4.142 25 C -0.132 4.132 26 C -0.131 4.131 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.398 0.602 33 H 0.398 0.602 34 H 0.391 0.609 35 H 0.268 0.732 36 H 0.124 0.876 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.669 1.017 -14.010 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.052 3.948 3 H 0.109 0.891 4 C -0.193 4.193 5 C 0.292 3.708 6 N -0.428 5.428 7 O -0.393 6.393 8 N -0.376 5.376 9 C 0.331 3.669 10 O -0.435 6.435 11 C 0.012 3.988 12 H 0.074 0.926 13 C -0.537 4.537 14 H 0.102 0.898 15 C -0.124 4.124 16 N -0.520 5.520 17 Si 0.693 3.307 18 H -0.199 1.199 19 H -0.184 1.184 20 H -0.210 1.210 21 C -0.034 4.034 22 C -0.088 4.088 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.150 4.150 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.116 0.884 31 H 0.123 0.877 32 H 0.226 0.774 33 H 0.229 0.771 34 H 0.224 0.776 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.129 0.871 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.565 2.139 -13.204 14.488 hybrid contribution 0.927 -1.635 -0.620 1.979 sum 6.492 0.504 -13.824 15.281 Atomic orbital electron populations 1.22190 0.95182 1.02230 1.02463 1.20510 0.93411 0.97788 0.83053 0.89147 1.22076 0.92225 1.03900 1.01065 1.20757 0.90660 0.78176 0.81159 1.43941 1.11422 1.59624 1.27817 1.90854 1.70175 1.40746 1.37523 1.45903 1.69107 1.13298 1.09269 1.21261 0.75419 0.86547 0.83639 1.90534 1.51486 1.16585 1.84887 1.18342 0.96404 0.93531 0.90561 0.92644 1.20583 1.05358 0.94518 1.33223 0.89756 1.25049 0.95312 0.97664 0.94359 1.69874 1.26603 1.15473 1.40014 0.86984 0.84066 0.80987 0.78615 1.19943 1.18366 1.20951 1.20017 0.92437 0.94499 0.96440 1.20983 1.00233 0.93175 0.94393 1.21060 0.94125 0.99754 1.00166 1.20866 0.94998 0.98545 1.01641 1.20869 0.98807 0.96029 0.99320 1.21011 0.93909 0.99568 1.00428 0.92424 0.91172 0.92459 0.88358 0.87745 0.77397 0.77126 0.77598 0.92221 0.85836 0.87126 0.87403 0.87338 0.87312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.48 37.16 0.35 -1.94 16 2 C 0.16 2.44 2.13 -67.93 -0.15 2.30 16 3 H 0.09 1.63 7.39 -51.93 -0.38 1.25 16 4 C -0.15 -1.58 5.24 -27.89 -0.15 -1.73 16 5 C 0.51 6.32 7.96 -10.99 -0.09 6.23 16 6 N -0.86 -6.69 8.87 31.22 0.28 -6.41 16 7 O -0.52 -9.40 16.19 5.56 0.09 -9.31 16 8 N -0.72 -13.79 4.22 -53.81 -0.23 -14.02 16 9 C 0.54 12.64 6.78 -10.99 -0.07 12.57 16 10 O -0.56 -14.21 14.88 5.56 0.08 -14.12 16 11 C 0.03 0.81 2.22 -94.08 -0.21 0.60 16 12 H 0.06 1.30 4.51 -51.93 -0.23 1.06 16 13 C -0.50 -13.65 8.25 -34.44 -0.28 -13.94 16 14 H 0.08 2.56 7.70 -52.49 -0.40 2.16 16 15 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 16 N -0.88 -25.69 13.96 55.43 0.77 -24.92 16 17 Si 0.87 20.16 27.02 -169.99 -4.59 15.56 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 H -0.26 -5.88 6.70 56.52 0.38 -5.50 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 C -0.03 -0.78 4.65 -104.62 -0.49 -1.27 16 22 C -0.07 -1.61 8.09 -39.59 -0.32 -1.93 16 23 C -0.13 -2.64 10.05 -39.58 -0.40 -3.04 16 24 C -0.14 -2.61 10.05 -39.58 -0.40 -3.00 16 25 C -0.13 -2.50 10.05 -39.59 -0.40 -2.90 16 26 C -0.13 -2.82 9.67 -39.58 -0.38 -3.20 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.40 1.68 8.83 -40.82 -0.36 1.32 16 33 H 0.40 2.91 8.93 -40.82 -0.36 2.54 16 34 H 0.39 6.90 8.59 -40.82 -0.35 6.55 16 35 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.12 3.00 7.24 -52.49 -0.38 2.62 16 37 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 38 H 0.11 1.62 8.06 -52.49 -0.42 1.19 16 39 H 0.11 1.71 8.06 -52.48 -0.42 1.28 16 40 H 0.11 2.20 7.96 -52.48 -0.42 1.79 16 LS Contribution 340.47 15.07 5.13 5.13 Total: -1.00 -35.30 340.47 -6.97 -42.28 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -5.44 Total: 14.96 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -3.07 Total: -9.15 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.82 Total: -45.34 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.59 Total: 15.56 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.30 -6.97 -42.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521705175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.951 kcal (2) G-P(sol) polarization free energy of solvation -35.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds