Wall clock time and date at job start Tue Mar 31 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46915 * 2 1 4 4 C 1.52994 * 109.47424 * 240.00059 * 2 1 3 5 5 C 1.50700 * 109.47392 * 174.99614 * 4 2 1 6 6 N 1.34771 * 119.99963 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99629 * 0.02562 * 5 4 2 8 8 N 1.46501 * 109.47295 * 119.99580 * 2 1 3 9 9 C 1.34775 * 120.00319 * 275.00820 * 8 2 1 10 10 O 1.21275 * 120.00077 * 359.97438 * 9 8 2 11 11 C 1.50702 * 119.99896 * 179.97438 * 9 8 2 12 12 H 1.08998 * 109.47203 * 25.91595 * 11 9 8 13 13 C 1.50697 * 109.47015 * 265.91176 * 11 9 8 14 14 H 1.07998 * 119.99867 * 304.97255 * 13 11 9 15 15 C 1.37878 * 119.99855 * 124.97093 * 13 11 9 16 16 N 1.31514 * 119.99756 * 186.05733 * 15 13 11 17 17 Si 1.86796 * 119.99995 * 6.33541 * 15 13 11 18 18 H 1.48494 * 109.47292 * 271.38432 * 17 15 13 19 19 H 1.48503 * 109.47222 * 31.38970 * 17 15 13 20 20 H 1.48509 * 109.46834 * 151.38442 * 17 15 13 21 21 C 1.50702 * 109.46959 * 145.91174 * 11 9 8 22 22 C 1.38230 * 120.00167 * 67.35297 * 21 11 9 23 23 C 1.38236 * 120.00342 * 179.78289 * 22 21 11 24 24 C 1.38238 * 119.99681 * 0.44914 * 23 22 21 25 25 C 1.38229 * 119.99807 * 359.80182 * 24 23 22 26 26 C 1.38229 * 120.00395 * 359.97438 * 25 24 23 27 27 H 1.09001 * 109.46915 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47266 * 299.99954 * 1 2 3 29 29 H 1.09004 * 109.47478 * 60.00170 * 1 2 3 30 30 H 1.09003 * 109.47485 * 295.00138 * 4 2 1 31 31 H 1.09005 * 109.47220 * 54.99594 * 4 2 1 32 32 H 0.97004 * 120.00413 * 0.02562 * 6 5 4 33 33 H 0.97010 * 120.00026 * 180.02562 * 6 5 4 34 34 H 0.97000 * 119.99660 * 94.99856 * 8 2 1 35 35 H 0.97000 * 120.00264 * 180.27500 * 16 15 13 36 36 H 1.08000 * 119.99969 * 359.97438 * 22 21 11 37 37 H 1.08001 * 120.00107 * 180.27298 * 23 22 21 38 38 H 1.07992 * 119.99897 * 179.83402 * 24 23 22 39 39 H 1.08009 * 119.99803 * 180.02562 * 25 24 23 40 40 H 1.08003 * 120.00401 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3127 6 7 4.2149 -1.1803 -2.3342 7 8 4.1450 -0.0209 -0.4440 8 7 2.0183 -0.6905 1.1962 9 6 2.1470 -0.0182 2.3572 10 8 1.8588 1.1586 2.4116 11 6 2.6488 -0.7287 3.5878 12 1 3.2675 -1.5757 3.2914 13 6 1.4765 -1.2216 4.3964 14 1 0.7083 -0.5304 4.7102 15 6 1.3848 -2.5548 4.7356 16 7 0.3064 -3.0076 5.3369 17 14 2.7955 -3.7163 4.3480 18 1 2.6152 -4.2764 2.9846 19 1 4.0800 -2.9739 4.4124 20 1 2.8127 -4.8221 5.3392 21 6 3.4675 0.2247 4.4195 22 6 2.8585 1.3000 5.0387 23 6 3.6087 2.1720 5.8054 24 6 4.9696 1.9739 5.9451 25 6 5.5795 0.9015 5.3217 26 6 4.8286 0.0269 4.5589 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.7517 -1.7715 -1.2056 31 1 1.6054 -0.2617 -2.1370 32 1 3.7326 -1.6556 -3.0288 33 1 5.1818 -1.1122 -2.3749 34 1 2.2490 -1.6317 1.1527 35 1 0.2434 -3.9448 5.5791 36 1 1.7959 1.4572 4.9261 37 1 3.1320 3.0097 6.2927 38 1 5.5562 2.6566 6.5419 39 1 6.6428 0.7465 5.4313 40 1 5.3052 -0.8108 4.0714 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521705175.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:25 Heat of formation + Delta-G solvation = -91.308788 kcal Electronic energy + Delta-G solvation = -23505.934891 eV Core-core repulsion = 20090.705052 eV Total energy + Delta-G solvation = -3415.229839 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17373 -40.36804 -39.35498 -36.58412 -35.46447 -34.58462 -33.45093 -32.19838 -31.63644 -29.41470 -28.88364 -25.62847 -23.54003 -23.34447 -22.23334 -21.22445 -20.99261 -19.12159 -18.43222 -17.81269 -17.64522 -17.51486 -17.05470 -16.39959 -15.97201 -15.60191 -15.49077 -15.31111 -14.90532 -14.76794 -14.42313 -14.17113 -13.95776 -13.75348 -13.42490 -13.31207 -12.94871 -12.86204 -12.80400 -12.75538 -12.06756 -11.94238 -11.91344 -11.68509 -11.41827 -10.95902 -10.89446 -10.57525 -10.49646 -9.86527 -9.65724 -9.37218 -8.36493 -6.43851 0.61791 0.68858 1.28781 1.36741 1.46626 1.74079 2.02764 2.28790 2.49134 2.66840 3.00445 3.14778 3.69546 4.04414 4.05317 4.22023 4.27636 4.28399 4.40092 4.42921 4.45597 4.55995 4.64629 4.72027 4.82184 4.82936 4.88018 5.13081 5.21016 5.32136 5.35681 5.39223 5.67798 5.72672 5.79012 5.95115 5.97914 6.19583 6.30058 6.55576 6.58187 6.77755 7.19149 7.46935 7.57030 8.79347 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.011674 B = 0.006726 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.927124 B = 4162.041779 C = 5035.909832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.151 3.849 3 H 0.057 0.943 4 C -0.140 4.140 5 C 0.504 3.496 6 N -0.838 5.838 7 O -0.587 6.587 8 N -0.714 5.714 9 C 0.534 3.466 10 O -0.591 6.591 11 C 0.037 3.963 12 H 0.065 0.935 13 C -0.502 4.502 14 H 0.029 0.971 15 C 0.028 3.972 16 N -0.932 5.932 17 Si 0.932 3.068 18 H -0.242 1.242 19 H -0.249 1.249 20 H -0.282 1.282 21 C -0.067 4.067 22 C -0.101 4.101 23 C -0.136 4.136 24 C -0.133 4.133 25 C -0.125 4.125 26 C -0.147 4.147 27 H 0.070 0.930 28 H 0.023 0.977 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.148 0.852 32 H 0.419 0.581 33 H 0.404 0.596 34 H 0.399 0.601 35 H 0.272 0.728 36 H 0.088 0.912 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.151 0.849 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.363 -0.200 -16.162 18.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.075 0.925 4 C -0.180 4.180 5 C 0.289 3.711 6 N -0.402 5.402 7 O -0.466 6.466 8 N -0.364 5.364 9 C 0.323 3.677 10 O -0.472 6.472 11 C 0.015 3.985 12 H 0.083 0.917 13 C -0.540 4.540 14 H 0.047 0.953 15 C -0.171 4.171 16 N -0.570 5.570 17 Si 0.754 3.246 18 H -0.166 1.166 19 H -0.173 1.173 20 H -0.208 1.208 21 C -0.068 4.068 22 C -0.120 4.120 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.143 4.143 26 C -0.165 4.165 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.115 0.885 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.251 0.749 33 H 0.234 0.766 34 H 0.233 0.767 35 H 0.081 0.919 36 H 0.106 0.894 37 H 0.153 0.847 38 H 0.171 0.829 39 H 0.168 0.832 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.249 0.878 -15.461 17.546 hybrid contribution 0.058 -1.136 0.020 1.138 sum 8.307 -0.259 -15.441 17.536 Atomic orbital electron populations 1.22126 0.94168 1.02924 1.02126 1.20725 0.94164 0.96677 0.83850 0.92472 1.22051 0.90988 1.05343 0.99590 1.21100 0.91477 0.77477 0.81047 1.43710 1.11784 1.57892 1.26823 1.90844 1.71443 1.44018 1.40327 1.45837 1.67738 1.13551 1.09259 1.21147 0.75467 0.86298 0.84827 1.90498 1.53076 1.18020 1.85630 1.18253 0.95292 0.94181 0.90795 0.91672 1.20486 1.05431 0.94055 1.34030 0.95302 1.25905 0.98078 0.99225 0.93922 1.70021 1.29026 1.16204 1.41750 0.85949 0.80398 0.78326 0.79972 1.16604 1.17276 1.20821 1.20115 0.93910 0.95241 0.97559 1.20891 0.99082 0.95073 0.96930 1.21379 0.95243 0.99547 0.99218 1.21369 0.94236 0.98680 1.00748 1.21365 1.00677 0.94868 0.97364 1.21251 0.93025 1.00853 1.01377 0.91110 0.95770 0.88538 0.85303 0.83394 0.74898 0.76564 0.76671 0.91891 0.89396 0.84732 0.82886 0.83159 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 9.48 71.98 0.68 -3.65 16 2 C 0.15 4.62 2.13 44.99 0.10 4.72 16 3 H 0.06 2.15 7.39 -2.39 -0.02 2.14 16 4 C -0.14 -2.47 5.24 29.85 0.16 -2.31 16 5 C 0.50 11.43 7.96 87.66 0.70 12.13 16 6 N -0.84 -10.21 8.87 -173.54 -1.54 -11.75 16 7 O -0.59 -21.18 16.19 -3.03 -0.05 -21.23 16 8 N -0.71 -27.72 4.22 -442.55 -1.87 -29.59 16 9 C 0.53 26.36 6.78 87.66 0.59 26.95 16 10 O -0.59 -32.63 14.88 -3.01 -0.04 -32.68 16 11 C 0.04 1.85 2.22 -13.03 -0.03 1.82 16 12 H 0.07 3.08 4.51 -2.39 -0.01 3.07 16 13 C -0.50 -29.35 8.25 25.60 0.21 -29.14 16 14 H 0.03 1.94 7.70 -2.91 -0.02 1.92 16 15 C 0.03 1.61 5.47 84.65 0.46 2.07 16 16 N -0.93 -56.58 13.96 21.45 0.30 -56.28 16 17 Si 0.93 41.41 27.02 68.60 1.85 43.26 16 18 H -0.24 -9.51 7.11 99.48 0.71 -8.80 16 19 H -0.25 -10.58 6.70 99.48 0.67 -9.91 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 21 C -0.07 -3.32 4.65 -19.87 -0.09 -3.41 16 22 C -0.10 -4.98 8.09 22.27 0.18 -4.80 16 23 C -0.14 -5.39 10.05 22.27 0.22 -5.16 16 24 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 25 C -0.13 -4.36 10.05 22.27 0.22 -4.13 16 26 C -0.15 -6.21 9.67 22.27 0.22 -5.99 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.15 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.42 1.66 8.83 -92.71 -0.82 0.85 16 33 H 0.40 4.77 8.93 -92.70 -0.83 3.94 16 34 H 0.40 13.87 8.59 -92.71 -0.80 13.07 16 35 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 36 H 0.09 4.80 7.24 -2.91 -0.02 4.78 16 37 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 38 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 39 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 40 H 0.12 4.66 7.96 -2.91 -0.02 4.64 16 Total: -1.00 -86.47 340.47 1.10 -85.36 By element: Atomic # 1 Polarization: 39.44 SS G_CDS: -1.39 Total: 38.04 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 3.85 Total: -15.15 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -3.11 Total: -97.61 kcal Atomic # 8 Polarization: -53.81 SS G_CDS: -0.09 Total: -53.91 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.85 Total: 43.26 kcal Total: -86.47 1.10 -85.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521705175.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.945 kcal (2) G-P(sol) polarization free energy of solvation -86.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds