Wall clock time and date at job start Tue Mar 31 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99702 * 2 1 4 4 O 1.21277 * 120.00204 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00022 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47358 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.46829 * 305.00233 * 6 5 3 8 8 C 1.52999 * 109.47099 * 184.99998 * 6 5 3 9 9 N 1.46495 * 109.46688 * 64.99959 * 6 5 3 10 10 C 1.34783 * 119.99757 * 205.00014 * 9 6 5 11 11 O 1.21540 * 119.99918 * 0.02562 * 10 9 6 12 12 C 1.47889 * 119.99795 * 180.02562 * 10 9 6 13 13 C 1.39911 * 120.02589 * 359.72200 * 12 10 9 14 14 C 1.38335 * 120.35853 * 179.72342 * 13 12 10 15 15 C 1.37752 * 120.40904 * 0.55321 * 14 13 12 16 16 C 1.40747 * 120.04036 * 359.72684 * 15 14 13 17 17 C 1.41437 * 120.17990 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99896 * 334.93130 * 17 16 15 19 19 C 1.39937 * 120.00216 * 154.92335 * 17 16 15 20 20 N 1.30824 * 120.00076 * 342.59945 * 19 17 16 21 21 Si 1.86795 * 119.99988 * 162.58933 * 19 17 16 22 22 H 1.48501 * 109.46970 * 60.00662 * 21 19 17 23 23 H 1.48498 * 109.47168 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47561 * 300.00499 * 21 19 17 25 25 C 1.38992 * 120.02297 * 180.02562 * 12 10 9 26 26 H 1.08999 * 109.46657 * 179.72122 * 1 2 3 27 27 H 1.08999 * 109.47062 * 299.71957 * 1 2 3 28 28 H 1.09003 * 109.47162 * 59.72130 * 1 2 3 29 29 H 0.97001 * 120.00505 * 180.28493 * 2 1 3 30 30 H 1.09000 * 109.47052 * 300.01045 * 5 3 2 31 31 H 1.09002 * 109.46864 * 60.00222 * 5 3 2 32 32 H 1.08990 * 109.47188 * 300.00370 * 8 6 5 33 33 H 1.09007 * 109.46900 * 60.00207 * 8 6 5 34 34 H 1.09001 * 109.46851 * 179.97438 * 8 6 5 35 35 H 0.97000 * 120.00445 * 25.00420 * 9 6 5 36 36 H 1.08001 * 119.82578 * 359.97438 * 13 12 10 37 37 H 1.07999 * 119.79309 * 180.25955 * 14 13 12 38 38 H 1.07996 * 119.97742 * 179.74236 * 15 14 13 39 39 H 0.96996 * 120.00511 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.20628 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1674 0.0006 6 6 4.1558 2.6099 0.0011 7 1 3.7215 3.1490 -0.8407 8 6 5.6807 2.6117 -0.1240 9 7 3.7677 3.2644 1.2529 10 6 3.6408 4.6054 1.3009 11 8 3.8479 5.2715 0.3056 12 6 3.2496 5.2663 2.5648 13 6 3.0054 4.4996 3.7093 14 6 2.6446 5.1110 4.8966 15 6 2.5105 6.4804 4.9631 16 6 2.7463 7.2677 3.8205 17 6 2.6100 8.6740 3.8855 18 1 1.9645 9.1202 4.6275 19 6 3.3117 9.4872 2.9886 20 7 4.3329 9.0040 2.3288 21 14 2.7902 11.2626 2.7332 22 1 2.8757 11.9940 4.0228 23 1 3.6880 11.9042 1.7394 24 1 1.3922 11.3011 2.2340 25 6 3.1181 6.6491 2.6148 26 1 -0.3632 -1.0277 -0.0050 27 1 -0.3633 0.5095 0.8925 28 1 -0.3634 0.5182 -0.8875 29 1 1.9501 -0.8400 -0.0042 30 1 4.0089 0.6536 0.8907 31 1 4.0095 0.6534 -0.8892 32 1 6.1150 2.0725 0.7177 33 1 5.9694 2.1246 -1.0555 34 1 6.0439 3.6394 -0.1241 35 1 3.6021 2.7329 2.0472 36 1 3.1030 3.4248 3.6668 37 1 2.4623 4.5106 5.7757 38 1 2.2244 6.9501 5.8925 39 1 4.8195 9.5678 1.7074 40 1 3.3012 7.2446 1.7326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001521746644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:14 Heat of formation + Delta-G solvation = -63.520307 kcal Electronic energy + Delta-G solvation = -22789.054450 eV Core-core repulsion = 19375.029609 eV Total energy + Delta-G solvation = -3414.024840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.99748 -38.86133 -37.00595 -35.34476 -34.58112 -33.66253 -31.53070 -29.71897 -29.32852 -28.65917 -26.10251 -25.22830 -23.03339 -21.22818 -20.84007 -20.24329 -19.47757 -17.74978 -17.32748 -16.33689 -16.00219 -15.70125 -15.14206 -14.94535 -14.54263 -14.26693 -13.82294 -13.69799 -13.28734 -13.11596 -12.87011 -12.69551 -12.45969 -12.40455 -12.11507 -12.01861 -11.76172 -11.56091 -11.08594 -11.00439 -10.92552 -10.63789 -10.43254 -9.91880 -9.88058 -9.60562 -9.26583 -9.13287 -8.84688 -8.48676 -7.52293 -7.42612 -6.71842 -4.33443 2.34750 2.61667 2.90269 3.07121 3.12635 3.14578 3.23456 3.80336 3.97650 4.04025 4.58455 4.68642 4.75131 5.02156 5.09372 5.31693 5.35166 5.49618 5.56453 5.64336 5.71183 5.74919 5.87578 6.12962 6.22256 6.28234 6.35719 6.38114 6.80098 7.04405 7.08170 7.12996 7.29932 7.31484 7.47694 7.79490 7.86399 8.01860 8.18086 8.22299 8.30664 8.59656 8.88576 8.92648 9.15209 10.23103 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.003933 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.623319 B = 7118.246512 C = 7492.130320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.743 5.743 3 C 0.502 3.498 4 O -0.511 6.511 5 C -0.149 4.149 6 C 0.158 3.842 7 H 0.092 0.908 8 C -0.163 4.163 9 N -0.723 5.723 10 C 0.571 3.429 11 O -0.547 6.547 12 C -0.124 4.124 13 C -0.215 4.215 14 C -0.099 4.099 15 C -0.213 4.213 16 C 0.100 3.900 17 C -0.463 4.463 18 H 0.080 0.920 19 C 0.074 3.926 20 N -0.785 5.785 21 Si 0.910 3.090 22 H -0.266 1.266 23 H -0.278 1.278 24 H -0.263 1.263 25 C -0.092 4.092 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.399 0.601 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.394 0.606 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.284 0.716 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.666 -18.209 -4.195 18.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.397 5.397 3 C 0.288 3.712 4 O -0.385 6.385 5 C -0.190 4.190 6 C 0.052 3.948 7 H 0.110 0.890 8 C -0.221 4.221 9 N -0.376 5.376 10 C 0.362 3.638 11 O -0.425 6.425 12 C -0.127 4.127 13 C -0.235 4.235 14 C -0.118 4.118 15 C -0.233 4.233 16 C 0.097 3.903 17 C -0.492 4.492 18 H 0.098 0.902 19 C -0.145 4.145 20 N -0.409 5.409 21 Si 0.735 3.265 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.188 1.188 25 C -0.112 4.112 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.232 0.768 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.229 0.771 36 H 0.105 0.895 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.095 0.905 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.781 -16.858 -5.100 17.630 hybrid contribution -0.034 -0.122 0.317 0.342 sum -0.815 -16.981 -4.782 17.660 Atomic orbital electron populations 1.21504 0.79811 1.01828 1.02517 1.45848 1.07699 1.08666 1.77439 1.20773 0.90362 0.83708 0.76394 1.90841 1.70075 1.30854 1.46693 1.22056 0.92247 0.99635 1.05016 1.20527 0.94213 0.90267 0.89767 0.88956 1.22203 0.95269 1.03360 1.01311 1.45798 1.72220 1.07446 1.12097 1.18690 0.75215 0.81068 0.88832 1.90667 1.50819 1.64238 1.36803 1.19500 1.06457 0.94862 0.91920 1.20318 1.12904 0.96418 0.93859 1.20416 1.00689 0.94725 0.95944 1.21079 1.11522 0.93212 0.97494 1.17589 0.89184 0.93414 0.90107 1.19541 1.23976 0.90890 1.14756 0.90196 1.25945 0.93264 1.01298 0.94002 1.69782 1.12907 1.38397 1.19807 0.86335 0.79832 0.81445 0.78933 1.19031 1.20255 1.18757 1.21628 0.99553 0.91218 0.98815 0.90956 0.92147 0.92356 0.76810 0.88459 0.87692 0.92540 0.92060 0.91296 0.77148 0.89488 0.89057 0.88711 0.90466 0.84910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.70 59.85 0.64 1.37 16 2 N -0.74 -6.34 5.71 -67.08 -0.38 -6.73 16 3 C 0.50 6.22 7.69 -10.98 -0.08 6.14 16 4 O -0.51 -9.33 15.35 5.56 0.09 -9.25 16 5 C -0.15 -1.42 5.24 -27.88 -0.15 -1.57 16 6 C 0.16 2.28 2.14 -67.93 -0.15 2.13 16 7 H 0.09 1.63 7.39 -51.93 -0.38 1.24 16 8 C -0.16 -2.03 9.48 37.16 0.35 -1.68 16 9 N -0.72 -12.85 4.17 -54.74 -0.23 -13.08 16 10 C 0.57 13.43 7.74 -12.31 -0.10 13.34 16 11 O -0.55 -14.60 15.99 5.33 0.09 -14.51 16 12 C -0.12 -3.13 5.87 -105.04 -0.62 -3.74 16 13 C -0.21 -4.81 9.55 -38.92 -0.37 -5.18 16 14 C -0.10 -2.23 10.01 -39.72 -0.40 -2.63 16 15 C -0.21 -5.29 9.78 -38.81 -0.38 -5.67 16 16 C 0.10 2.75 5.57 -106.87 -0.59 2.15 16 17 C -0.46 -12.62 9.05 -37.73 -0.34 -12.96 16 18 H 0.08 2.06 7.90 -52.49 -0.41 1.65 16 19 C 0.07 1.93 5.14 -17.34 -0.09 1.84 16 20 N -0.78 -21.48 10.97 55.55 0.61 -20.87 16 21 Si 0.91 19.46 29.59 -169.99 -5.03 14.43 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.09 -2.59 8.23 -38.44 -0.32 -2.90 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.40 1.91 8.83 -40.82 -0.36 1.55 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.39 6.21 6.62 -40.82 -0.27 5.94 16 36 H 0.09 1.63 6.38 -52.49 -0.33 1.30 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 40 H 0.13 4.03 5.77 -52.48 -0.30 3.73 16 LS Contribution 341.74 15.07 5.15 5.15 Total: -1.00 -35.09 341.74 -7.73 -42.82 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -5.43 Total: 11.39 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -2.58 Total: -9.35 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.00 Total: -40.68 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.17 Total: -23.76 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.43 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.09 -7.73 -42.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521746644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.705 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds