Wall clock time and date at job start Tue Mar 31 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34781 * 119.99702 * 2 1 4 4 O 1.21277 * 120.00204 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00022 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47358 * 180.02562 * 5 3 2 7 7 H 1.08999 * 109.46829 * 305.00233 * 6 5 3 8 8 C 1.52999 * 109.47099 * 184.99998 * 6 5 3 9 9 N 1.46495 * 109.46688 * 64.99959 * 6 5 3 10 10 C 1.34783 * 119.99757 * 205.00014 * 9 6 5 11 11 O 1.21540 * 119.99918 * 0.02562 * 10 9 6 12 12 C 1.47889 * 119.99795 * 180.02562 * 10 9 6 13 13 C 1.39911 * 120.02589 * 359.72200 * 12 10 9 14 14 C 1.38335 * 120.35853 * 179.72342 * 13 12 10 15 15 C 1.37752 * 120.40904 * 0.55321 * 14 13 12 16 16 C 1.40747 * 120.04036 * 359.72684 * 15 14 13 17 17 C 1.41437 * 120.17990 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99896 * 334.93130 * 17 16 15 19 19 C 1.39937 * 120.00216 * 154.92335 * 17 16 15 20 20 N 1.30824 * 120.00076 * 342.59945 * 19 17 16 21 21 Si 1.86795 * 119.99988 * 162.58933 * 19 17 16 22 22 H 1.48501 * 109.46970 * 60.00662 * 21 19 17 23 23 H 1.48498 * 109.47168 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47561 * 300.00499 * 21 19 17 25 25 C 1.38992 * 120.02297 * 180.02562 * 12 10 9 26 26 H 1.08999 * 109.46657 * 179.72122 * 1 2 3 27 27 H 1.08999 * 109.47062 * 299.71957 * 1 2 3 28 28 H 1.09003 * 109.47162 * 59.72130 * 1 2 3 29 29 H 0.97001 * 120.00505 * 180.28493 * 2 1 3 30 30 H 1.09000 * 109.47052 * 300.01045 * 5 3 2 31 31 H 1.09002 * 109.46864 * 60.00222 * 5 3 2 32 32 H 1.08990 * 109.47188 * 300.00370 * 8 6 5 33 33 H 1.09007 * 109.46900 * 60.00207 * 8 6 5 34 34 H 1.09001 * 109.46851 * 179.97438 * 8 6 5 35 35 H 0.97000 * 120.00445 * 25.00420 * 9 6 5 36 36 H 1.08001 * 119.82578 * 359.97438 * 13 12 10 37 37 H 1.07999 * 119.79309 * 180.25955 * 14 13 12 38 38 H 1.07996 * 119.97742 * 179.74236 * 15 14 13 39 39 H 0.96996 * 120.00511 * 180.02562 * 20 19 17 40 40 H 1.08003 * 120.20628 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 1.5325 2.2176 0.0005 5 6 3.6459 1.1674 0.0006 6 6 4.1558 2.6099 0.0011 7 1 3.7215 3.1490 -0.8407 8 6 5.6807 2.6117 -0.1240 9 7 3.7677 3.2644 1.2529 10 6 3.6408 4.6054 1.3009 11 8 3.8479 5.2715 0.3056 12 6 3.2496 5.2663 2.5648 13 6 3.0054 4.4996 3.7093 14 6 2.6446 5.1110 4.8966 15 6 2.5105 6.4804 4.9631 16 6 2.7463 7.2677 3.8205 17 6 2.6100 8.6740 3.8855 18 1 1.9645 9.1202 4.6275 19 6 3.3117 9.4872 2.9886 20 7 4.3329 9.0040 2.3288 21 14 2.7902 11.2626 2.7332 22 1 2.8757 11.9940 4.0228 23 1 3.6880 11.9042 1.7394 24 1 1.3922 11.3011 2.2340 25 6 3.1181 6.6491 2.6148 26 1 -0.3632 -1.0277 -0.0050 27 1 -0.3633 0.5095 0.8925 28 1 -0.3634 0.5182 -0.8875 29 1 1.9501 -0.8400 -0.0042 30 1 4.0089 0.6536 0.8907 31 1 4.0095 0.6534 -0.8892 32 1 6.1150 2.0725 0.7177 33 1 5.9694 2.1246 -1.0555 34 1 6.0439 3.6394 -0.1241 35 1 3.6021 2.7329 2.0472 36 1 3.1030 3.4248 3.6668 37 1 2.4623 4.5106 5.7757 38 1 2.2244 6.9501 5.8925 39 1 4.8195 9.5678 1.7074 40 1 3.3012 7.2446 1.7326 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001521746644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:13 Heat of formation + Delta-G solvation = -90.036815 kcal Electronic energy + Delta-G solvation = -22790.204292 eV Core-core repulsion = 19375.029609 eV Total energy + Delta-G solvation = -3415.174682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24127 -40.36974 -38.84217 -36.74383 -35.61115 -35.52227 -33.10255 -31.45966 -31.19700 -29.65804 -27.22271 -26.87789 -24.71593 -22.87421 -22.32336 -21.30687 -21.22175 -19.54425 -18.33215 -17.86390 -17.46649 -16.94381 -16.65596 -16.36915 -16.15770 -15.80111 -15.36504 -15.11377 -14.88153 -14.48937 -14.26771 -14.08536 -13.95424 -13.50964 -13.40348 -13.10369 -12.93257 -12.86863 -12.80941 -12.80557 -12.53006 -12.21612 -11.98631 -11.86772 -11.51476 -11.07218 -10.92079 -10.71492 -10.11693 -10.02572 -9.45798 -9.38669 -8.66482 -6.39106 0.41293 1.00802 1.34450 1.47149 1.49696 1.70131 2.14460 2.20131 2.32087 2.35217 2.80517 3.64760 3.70596 3.86721 4.09753 4.24029 4.39856 4.41035 4.51905 4.57474 4.58962 4.66285 4.70482 4.81444 4.88032 4.96672 5.07172 5.10846 5.19489 5.30977 5.33109 5.49390 5.51475 5.64417 5.86561 5.92257 6.04552 6.27866 6.52330 6.62317 6.74095 6.86932 6.94649 7.37363 7.41637 8.30470 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020145 B = 0.003933 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.623319 B = 7118.246512 C = 7492.130320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.722 5.722 3 C 0.494 3.506 4 O -0.583 6.583 5 C -0.134 4.134 6 C 0.149 3.851 7 H 0.050 0.950 8 C -0.155 4.155 9 N -0.699 5.699 10 C 0.563 3.437 11 O -0.594 6.594 12 C -0.139 4.139 13 C -0.198 4.198 14 C -0.095 4.095 15 C -0.219 4.219 16 C 0.068 3.932 17 C -0.501 4.501 18 H 0.085 0.915 19 C 0.028 3.972 20 N -0.826 5.826 21 Si 0.985 3.015 22 H -0.249 1.249 23 H -0.271 1.271 24 H -0.263 1.263 25 C -0.134 4.134 26 H 0.114 0.886 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.422 0.578 30 H 0.138 0.862 31 H 0.149 0.851 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.024 0.976 35 H 0.406 0.594 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.110 0.890 39 H 0.286 0.714 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.453 -21.989 -3.053 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.376 5.376 3 C 0.282 3.718 4 O -0.463 6.463 5 C -0.174 4.174 6 C 0.044 3.956 7 H 0.069 0.931 8 C -0.213 4.213 9 N -0.350 5.350 10 C 0.353 3.647 11 O -0.477 6.477 12 C -0.142 4.142 13 C -0.218 4.218 14 C -0.113 4.113 15 C -0.238 4.238 16 C 0.066 3.934 17 C -0.530 4.530 18 H 0.103 0.897 19 C -0.187 4.187 20 N -0.451 5.451 21 Si 0.805 3.195 22 H -0.173 1.173 23 H -0.196 1.196 24 H -0.187 1.187 25 C -0.154 4.154 26 H 0.132 0.868 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.259 0.741 30 H 0.155 0.845 31 H 0.166 0.834 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.044 0.956 35 H 0.243 0.757 36 H 0.150 0.850 37 H 0.158 0.842 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.555 -20.774 -3.930 21.150 hybrid contribution -0.134 0.769 -0.023 0.781 sum -0.688 -20.005 -3.953 20.404 Atomic orbital electron populations 1.21591 0.79716 1.03985 1.00761 1.45702 1.07889 1.08705 1.75255 1.21348 0.91644 0.83557 0.75268 1.90836 1.71569 1.33502 1.50348 1.22051 0.90004 0.96312 1.09002 1.20790 0.95611 0.92637 0.86559 0.93129 1.22136 0.93346 1.01466 1.04367 1.45634 1.69981 1.05426 1.13995 1.18651 0.75368 0.82965 0.87766 1.90633 1.53163 1.65775 1.38084 1.19873 1.05971 0.94383 0.93968 1.20807 1.09964 0.98465 0.92523 1.20922 0.98734 0.94102 0.97557 1.21407 1.10766 0.94554 0.97120 1.17947 0.90186 0.94322 0.90945 1.19854 1.25279 0.91545 1.16325 0.89683 1.26891 0.92678 1.05946 0.93145 1.69893 1.14306 1.40158 1.20782 0.85220 0.79135 0.75691 0.79489 1.17296 1.19557 1.18703 1.21429 1.03254 0.92628 0.98128 0.86752 0.94095 0.94081 0.74080 0.84451 0.83354 0.89919 0.88547 0.95632 0.75659 0.84981 0.84208 0.87160 0.90341 0.88678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 10.70 127.77 1.37 2.60 16 2 N -0.72 -9.92 5.71 -484.51 -2.77 -12.69 16 3 C 0.49 11.16 7.69 87.66 0.67 11.83 16 4 O -0.58 -21.52 15.35 -3.02 -0.05 -21.57 16 5 C -0.13 -2.01 5.24 29.85 0.16 -1.85 16 6 C 0.15 4.11 2.14 44.99 0.10 4.21 16 7 H 0.05 1.85 7.39 -2.39 -0.02 1.83 16 8 C -0.16 -3.56 9.48 71.98 0.68 -2.88 16 9 N -0.70 -24.38 4.17 -445.38 -1.86 -26.24 16 10 C 0.56 27.54 7.74 86.80 0.67 28.21 16 11 O -0.59 -34.18 15.99 -3.84 -0.06 -34.24 16 12 C -0.14 -7.20 5.87 -20.14 -0.12 -7.31 16 13 C -0.20 -8.47 9.55 22.70 0.22 -8.26 16 14 C -0.10 -4.02 10.01 22.18 0.22 -3.80 16 15 C -0.22 -10.80 9.78 22.77 0.22 -10.58 16 16 C 0.07 3.93 5.57 -21.32 -0.12 3.81 16 17 C -0.50 -28.67 9.05 23.47 0.21 -28.45 16 18 H 0.09 4.56 7.90 -2.91 -0.02 4.54 16 19 C 0.03 1.55 5.14 85.25 0.44 1.99 16 20 N -0.83 -48.36 10.97 21.82 0.24 -48.12 16 21 Si 0.98 41.56 29.59 68.60 2.03 43.59 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 25 C -0.13 -8.01 8.23 23.01 0.19 -7.82 16 26 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.42 1.94 8.83 -92.71 -0.82 1.13 16 30 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.15 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.41 11.70 6.62 -92.71 -0.61 11.09 16 36 H 0.13 4.38 6.38 -2.91 -0.02 4.36 16 37 H 0.14 4.58 8.06 -2.91 -0.02 4.55 16 38 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 39 H 0.29 15.47 8.30 -92.71 -0.77 14.70 16 40 H 0.10 6.33 5.77 -2.91 -0.02 6.32 16 Total: -1.00 -87.76 341.74 2.09 -85.66 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.36 Total: 31.89 kcal Atomic # 6 Polarization: -23.21 SS G_CDS: 4.91 Total: -18.29 kcal Atomic # 7 Polarization: -82.67 SS G_CDS: -4.38 Total: -87.05 kcal Atomic # 8 Polarization: -55.70 SS G_CDS: -0.11 Total: -55.81 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -87.76 2.09 -85.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001521746644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.372 kcal (2) G-P(sol) polarization free energy of solvation -87.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds