Wall clock time and date at job start Tue Mar 31 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 O 1.21282 * 120.00000 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00415 * 179.97438 * 3 2 1 6 6 C 1.46495 * 120.00301 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.47459 * 34.99619 * 6 5 3 8 8 C 1.53000 * 109.47142 * 275.00022 * 6 5 3 9 9 C 1.50702 * 109.47127 * 155.00105 * 6 5 3 10 10 O 1.21276 * 120.00130 * 359.97438 * 9 6 5 11 11 N 1.34781 * 119.99654 * 180.02562 * 9 6 5 12 12 C 1.39938 * 119.99679 * 174.89930 * 11 9 6 13 13 C 1.39289 * 119.94573 * 325.54098 * 12 11 9 14 14 C 1.38489 * 120.42957 * 179.76629 * 13 12 11 15 15 C 1.37684 * 120.31844 * 0.51589 * 14 13 12 16 16 C 1.40733 * 119.88709 * 359.73925 * 15 14 13 17 17 C 1.41407 * 120.21184 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99751 * 25.14009 * 17 16 15 19 19 C 1.39936 * 120.00382 * 205.13381 * 17 16 15 20 20 N 1.30833 * 119.99907 * 16.78639 * 19 17 16 21 21 Si 1.86798 * 120.00365 * 196.79145 * 19 17 16 22 22 H 1.48496 * 109.47023 * 59.99637 * 21 19 17 23 23 H 1.48494 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47030 * 300.00006 * 21 19 17 25 25 C 1.38237 * 119.94884 * 145.82299 * 12 11 9 26 26 H 1.09003 * 109.47420 * 60.00102 * 1 2 3 27 27 H 1.09007 * 109.46778 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47074 * 299.99858 * 1 2 3 29 29 H 1.08999 * 109.47528 * 239.99939 * 2 1 3 30 30 H 1.09003 * 109.47420 * 119.99898 * 2 1 3 31 31 H 0.97001 * 119.99756 * 359.97438 * 5 3 2 32 32 H 1.09004 * 109.47560 * 59.99851 * 8 6 5 33 33 H 1.09001 * 109.47717 * 180.02562 * 8 6 5 34 34 H 1.08999 * 109.47336 * 300.00149 * 8 6 5 35 35 H 0.96998 * 120.00632 * 354.89270 * 11 9 6 36 36 H 1.08008 * 119.78609 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.84390 * 180.23332 * 14 13 12 38 38 H 1.08000 * 120.05815 * 179.76811 * 15 14 13 39 39 H 0.96998 * 120.00273 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.16292 * 359.94645 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8456 3.0484 0.0011 7 1 3.1728 3.6714 0.5904 8 6 3.8975 3.5716 -1.4357 9 6 5.2269 3.0926 0.6020 10 8 5.7516 2.0711 0.9919 11 7 5.8787 4.2677 0.7071 12 6 7.1147 4.3261 1.3608 13 6 7.3619 3.5012 2.4555 14 6 8.5832 3.5473 3.1069 15 6 9.5633 4.4176 2.6853 16 6 9.3259 5.2609 1.5839 17 6 10.3279 6.1569 1.1448 18 1 11.3676 5.9453 1.3465 19 6 9.9724 7.3177 0.4489 20 7 8.7377 7.7492 0.4839 21 14 11.2604 8.2512 -0.5303 22 1 11.8250 7.3634 -1.5782 23 1 10.6335 9.4353 -1.1706 24 1 12.3467 8.6966 0.3790 25 6 8.0861 5.2066 0.9226 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9877 0.9300 0.0013 32 1 2.8984 3.5396 -1.8705 33 1 4.2612 4.5991 -1.4355 34 1 4.5703 2.9486 -2.0252 35 1 5.4912 5.0728 0.3296 36 1 6.5977 2.8182 2.7961 37 1 8.7661 2.9008 3.9524 38 1 10.5128 4.4527 3.1987 39 1 8.4912 8.5536 0.0013 40 1 7.8941 5.8492 0.0761 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526248036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:53 Heat of formation + Delta-G solvation = -65.592374 kcal Electronic energy + Delta-G solvation = -22410.354645 eV Core-core repulsion = 18996.239954 eV Total energy + Delta-G solvation = -3414.114692 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.44005 -39.31864 -37.33936 -35.05388 -34.40625 -33.39091 -33.03377 -30.78560 -29.57713 -28.25811 -25.37610 -25.26361 -23.80446 -21.38272 -21.05217 -20.34770 -19.60815 -17.88874 -17.53345 -16.67761 -15.97217 -15.84842 -15.53200 -14.95185 -14.81119 -14.61441 -14.21300 -13.72200 -13.59402 -13.10881 -12.92074 -12.68299 -12.48147 -12.38214 -12.31604 -11.95704 -11.72057 -11.65935 -11.37216 -11.29547 -11.15312 -10.77353 -10.69574 -10.11964 -9.99611 -9.79561 -9.57470 -9.33815 -9.19552 -8.97663 -7.43592 -7.08748 -6.74758 -4.41783 2.41664 2.53225 2.81486 2.88269 3.03562 3.06689 3.13986 3.27382 3.63814 3.89888 4.54048 4.58995 4.79574 4.86657 4.89112 4.99108 5.09562 5.32342 5.50710 5.57085 5.61995 5.69243 5.71431 5.98891 6.01585 6.20614 6.27507 6.56613 6.61227 6.81375 6.98902 7.01021 7.20017 7.39475 7.53849 7.60147 7.86474 7.97303 8.04066 8.11809 8.25698 8.45487 8.64030 8.84033 8.89910 10.14646 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.003287 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.497329 B = 8517.032662 C = 9275.794338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.514 3.486 4 O -0.545 6.545 5 N -0.712 5.712 6 C 0.124 3.876 7 H 0.113 0.887 8 C -0.160 4.160 9 C 0.504 3.496 10 O -0.524 6.524 11 N -0.656 5.656 12 C 0.143 3.857 13 C -0.227 4.227 14 C -0.086 4.086 15 C -0.227 4.227 16 C 0.120 3.880 17 C -0.463 4.463 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.799 5.799 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.180 4.180 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.411 0.589 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.404 0.596 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.280 0.720 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.057 -8.425 -4.266 14.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.301 3.699 4 O -0.422 6.422 5 N -0.366 5.366 6 C 0.015 3.985 7 H 0.131 0.869 8 C -0.218 4.218 9 C 0.289 3.711 10 O -0.400 6.400 11 N -0.300 5.300 12 C 0.051 3.949 13 C -0.248 4.248 14 C -0.104 4.104 15 C -0.247 4.247 16 C 0.117 3.883 17 C -0.493 4.493 18 H 0.096 0.904 19 C -0.140 4.140 20 N -0.424 5.424 21 Si 0.733 3.267 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.201 4.201 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.247 0.753 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.430 -8.294 -4.061 14.695 hybrid contribution 0.740 0.639 -0.584 1.139 sum -10.690 -7.655 -4.645 13.944 Atomic orbital electron populations 1.21527 0.92974 1.01530 1.03361 1.21623 0.98581 0.93553 1.04605 1.20808 0.81702 0.92056 0.75346 1.90695 1.55287 1.46526 1.49688 1.45825 1.07506 1.08082 1.75189 1.20769 0.93761 0.85407 0.98513 0.86890 1.22135 1.03410 1.01835 0.94437 1.20490 0.87036 0.84133 0.79403 1.90693 1.67644 1.33228 1.48459 1.43409 1.20578 1.10000 1.56005 1.17594 0.84367 0.99548 0.93349 1.20272 0.98802 1.05915 0.99808 1.20418 0.93695 0.97987 0.98338 1.21052 0.99304 1.03740 1.00603 1.17361 0.91799 0.90255 0.88866 1.19512 0.94628 1.03783 1.31351 0.90355 1.25881 0.96076 0.97283 0.94800 1.69798 1.18897 1.20326 1.33427 0.86367 0.81243 0.78735 0.80387 1.18875 1.20375 1.19000 1.21077 0.93908 1.02446 1.02692 0.92000 0.92100 0.91963 0.88821 0.88702 0.75256 0.90936 0.90715 0.91656 0.76058 0.88200 0.88999 0.88800 0.90914 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.20 37.15 0.34 -0.77 16 2 C -0.14 -1.17 6.42 -27.89 -0.18 -1.35 16 3 C 0.51 6.17 7.79 -10.98 -0.09 6.08 16 4 O -0.54 -8.33 15.64 5.56 0.09 -8.24 16 5 N -0.71 -8.63 4.95 -54.94 -0.27 -8.90 16 6 C 0.12 1.65 2.99 -69.08 -0.21 1.44 16 7 H 0.11 1.53 7.58 -51.93 -0.39 1.13 16 8 C -0.16 -1.82 9.38 37.16 0.35 -1.47 16 9 C 0.50 8.55 6.95 -10.98 -0.08 8.47 16 10 O -0.52 -10.43 13.58 5.56 0.08 -10.35 16 11 N -0.66 -11.93 5.26 -9.91 -0.05 -11.98 16 12 C 0.14 3.26 6.25 -83.77 -0.52 2.74 16 13 C -0.23 -5.29 8.66 -39.10 -0.34 -5.63 16 14 C -0.09 -1.97 10.02 -39.69 -0.40 -2.37 16 15 C -0.23 -5.56 9.79 -38.84 -0.38 -5.94 16 16 C 0.12 3.14 5.57 -106.85 -0.59 2.55 16 17 C -0.46 -11.99 9.06 -37.74 -0.34 -12.34 16 18 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 19 C 0.08 1.87 5.16 -17.34 -0.09 1.78 16 20 N -0.80 -19.71 10.94 55.55 0.61 -19.11 16 21 Si 0.91 18.20 29.59 -169.99 -5.03 13.17 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 C -0.18 -4.48 8.60 -38.68 -0.33 -4.81 16 26 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 27 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.41 4.67 7.79 -40.82 -0.32 4.35 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.77 7.46 -51.93 -0.39 0.39 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 6.25 8.10 -40.82 -0.33 5.92 16 36 H 0.10 2.29 6.47 -52.48 -0.34 1.96 16 37 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.09 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 40 H 0.12 3.09 6.17 -52.49 -0.32 2.76 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -30.43 339.90 -7.76 -38.19 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -5.44 Total: 13.72 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -2.86 Total: -11.62 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.28 Total: -39.99 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.16 Total: -18.59 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.43 -7.76 -38.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526248036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.403 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds