Wall clock time and date at job start Tue Mar 31 2020 06:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 O 1.21282 * 120.00000 * 0.02562 * 3 2 1 5 5 N 1.34777 * 120.00415 * 179.97438 * 3 2 1 6 6 C 1.46495 * 120.00301 * 180.02562 * 5 3 2 7 7 H 1.08996 * 109.47459 * 34.99619 * 6 5 3 8 8 C 1.53000 * 109.47142 * 275.00022 * 6 5 3 9 9 C 1.50702 * 109.47127 * 155.00105 * 6 5 3 10 10 O 1.21276 * 120.00130 * 359.97438 * 9 6 5 11 11 N 1.34781 * 119.99654 * 180.02562 * 9 6 5 12 12 C 1.39938 * 119.99679 * 174.89930 * 11 9 6 13 13 C 1.39289 * 119.94573 * 325.54098 * 12 11 9 14 14 C 1.38489 * 120.42957 * 179.76629 * 13 12 11 15 15 C 1.37684 * 120.31844 * 0.51589 * 14 13 12 16 16 C 1.40733 * 119.88709 * 359.73925 * 15 14 13 17 17 C 1.41407 * 120.21184 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99751 * 25.14009 * 17 16 15 19 19 C 1.39936 * 120.00382 * 205.13381 * 17 16 15 20 20 N 1.30833 * 119.99907 * 16.78639 * 19 17 16 21 21 Si 1.86798 * 120.00365 * 196.79145 * 19 17 16 22 22 H 1.48496 * 109.47023 * 59.99637 * 21 19 17 23 23 H 1.48494 * 109.47381 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47030 * 300.00006 * 21 19 17 25 25 C 1.38237 * 119.94884 * 145.82299 * 12 11 9 26 26 H 1.09003 * 109.47420 * 60.00102 * 1 2 3 27 27 H 1.09007 * 109.46778 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47074 * 299.99858 * 1 2 3 29 29 H 1.08999 * 109.47528 * 239.99939 * 2 1 3 30 30 H 1.09003 * 109.47420 * 119.99898 * 2 1 3 31 31 H 0.97001 * 119.99756 * 359.97438 * 5 3 2 32 32 H 1.09004 * 109.47560 * 59.99851 * 8 6 5 33 33 H 1.09001 * 109.47717 * 180.02562 * 8 6 5 34 34 H 1.08999 * 109.47336 * 300.00149 * 8 6 5 35 35 H 0.96998 * 120.00632 * 354.89270 * 11 9 6 36 36 H 1.08008 * 119.78609 * 0.02562 * 13 12 11 37 37 H 1.08002 * 119.84390 * 180.23332 * 14 13 12 38 38 H 1.08000 * 120.05815 * 179.76811 * 15 14 13 39 39 H 0.96998 * 120.00273 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.16292 * 359.94645 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3427 0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.8456 3.0484 0.0011 7 1 3.1728 3.6714 0.5904 8 6 3.8975 3.5716 -1.4357 9 6 5.2269 3.0926 0.6020 10 8 5.7516 2.0711 0.9919 11 7 5.8787 4.2677 0.7071 12 6 7.1147 4.3261 1.3608 13 6 7.3619 3.5012 2.4555 14 6 8.5832 3.5473 3.1069 15 6 9.5633 4.4176 2.6853 16 6 9.3259 5.2609 1.5839 17 6 10.3279 6.1569 1.1448 18 1 11.3676 5.9453 1.3465 19 6 9.9724 7.3177 0.4489 20 7 8.7377 7.7492 0.4839 21 14 11.2604 8.2512 -0.5303 22 1 11.8250 7.3634 -1.5782 23 1 10.6335 9.4353 -1.1706 24 1 12.3467 8.6966 0.3790 25 6 8.0861 5.2066 0.9226 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.9877 0.9300 0.0013 32 1 2.8984 3.5396 -1.8705 33 1 4.2612 4.5991 -1.4355 34 1 4.5703 2.9486 -2.0252 35 1 5.4912 5.0728 0.3296 36 1 6.5977 2.8182 2.7961 37 1 8.7661 2.9008 3.9524 38 1 10.5128 4.4527 3.1987 39 1 8.4912 8.5536 0.0013 40 1 7.8941 5.8492 0.0761 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526248036.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:53 Heat of formation + Delta-G solvation = -84.885125 kcal Electronic energy + Delta-G solvation = -22411.191242 eV Core-core repulsion = 18996.239954 eV Total energy + Delta-G solvation = -3414.951288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.72689 -40.54135 -39.05180 -36.25560 -35.99351 -35.14219 -33.81712 -31.90584 -31.42286 -29.89579 -27.19123 -26.28183 -24.85494 -23.13521 -22.60208 -21.32679 -21.16073 -19.28503 -19.04078 -17.96944 -17.30062 -17.21025 -16.66102 -16.52188 -16.38200 -16.10800 -15.41094 -15.04435 -14.68388 -14.57570 -14.46327 -14.17496 -13.74160 -13.46747 -13.43938 -13.15619 -13.01266 -12.83376 -12.72015 -12.62174 -12.58052 -12.31942 -12.01510 -11.86281 -11.59115 -11.21064 -11.01132 -10.96443 -10.71735 -10.25084 -9.34122 -8.88682 -8.56172 -6.35775 0.76060 1.03612 1.40905 1.48132 1.51982 1.56787 1.65087 1.82451 2.22443 2.39577 2.74833 3.45077 3.71463 3.77977 3.95514 4.03472 4.23428 4.28822 4.44356 4.56884 4.69138 4.70249 4.78142 4.83419 5.01238 5.06212 5.07854 5.10311 5.14386 5.17946 5.24698 5.34969 5.39605 5.75005 5.82401 6.01480 6.08063 6.30567 6.45633 6.50555 6.69582 6.93399 6.95342 7.13028 7.17107 8.33844 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027485 B = 0.003287 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.497329 B = 8517.032662 C = 9275.794338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.138 4.138 3 C 0.511 3.489 4 O -0.581 6.581 5 N -0.711 5.711 6 C 0.134 3.866 7 H 0.114 0.886 8 C -0.153 4.153 9 C 0.508 3.492 10 O -0.552 6.552 11 N -0.653 5.653 12 C 0.150 3.850 13 C -0.239 4.239 14 C -0.084 4.084 15 C -0.248 4.248 16 C 0.092 3.908 17 C -0.498 4.498 18 H 0.076 0.924 19 C 0.039 3.961 20 N -0.821 5.821 21 Si 0.980 3.020 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.262 1.262 25 C -0.200 4.200 26 H 0.050 0.950 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.119 0.881 30 H 0.112 0.888 31 H 0.416 0.584 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.417 0.583 36 H 0.104 0.896 37 H 0.120 0.880 38 H 0.101 0.899 39 H 0.289 0.711 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.546 -8.948 -5.151 15.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.300 3.700 4 O -0.461 6.461 5 N -0.365 5.365 6 C 0.025 3.975 7 H 0.131 0.869 8 C -0.212 4.212 9 C 0.295 3.705 10 O -0.429 6.429 11 N -0.298 5.298 12 C 0.057 3.943 13 C -0.260 4.260 14 C -0.102 4.102 15 C -0.268 4.268 16 C 0.089 3.911 17 C -0.527 4.527 18 H 0.094 0.906 19 C -0.176 4.176 20 N -0.446 5.446 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.186 1.186 25 C -0.222 4.222 26 H 0.069 0.931 27 H 0.104 0.896 28 H 0.064 0.936 29 H 0.137 0.863 30 H 0.130 0.870 31 H 0.253 0.747 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.254 0.746 36 H 0.122 0.878 37 H 0.138 0.862 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.945 -8.832 -4.950 15.659 hybrid contribution 0.823 0.747 -0.263 1.143 sum -11.122 -8.085 -5.212 14.705 Atomic orbital electron populations 1.21537 0.93024 1.02745 1.02029 1.21707 0.98403 0.91008 1.06631 1.21540 0.81050 0.93358 0.74076 1.90682 1.56009 1.48006 1.51388 1.45886 1.07893 1.07605 1.75070 1.20669 0.90905 0.86538 0.99339 0.86871 1.22109 1.03819 1.02373 0.92888 1.21096 0.87928 0.83066 0.78386 1.90674 1.68632 1.34091 1.49517 1.43370 1.19324 1.11288 1.55852 1.17637 0.85496 0.98188 0.92977 1.20457 0.99136 1.06252 1.00172 1.20729 0.93156 0.97598 0.98764 1.21224 1.00222 1.04468 1.00878 1.17768 0.92667 0.91009 0.89680 1.19767 0.94614 1.05030 1.33297 0.90578 1.26681 0.98257 0.97648 0.95059 1.69832 1.20419 1.20871 1.33515 0.85280 0.78452 0.77508 0.78655 1.18727 1.19056 1.18604 1.21033 0.94463 1.03593 1.03082 0.93098 0.89565 0.93574 0.86254 0.86971 0.74669 0.90414 0.89713 0.91471 0.74550 0.87839 0.86242 0.88091 0.90005 0.86663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.20 71.98 0.66 -1.31 16 2 C -0.14 -1.91 6.42 29.85 0.19 -1.72 16 3 C 0.51 11.50 7.79 87.66 0.68 12.18 16 4 O -0.58 -17.31 15.64 -3.04 -0.05 -17.36 16 5 N -0.71 -16.16 4.95 -446.11 -2.21 -18.37 16 6 C 0.13 3.41 2.99 44.25 0.13 3.54 16 7 H 0.11 2.94 7.58 -2.39 -0.02 2.93 16 8 C -0.15 -3.25 9.38 71.98 0.68 -2.58 16 9 C 0.51 16.81 6.95 87.66 0.61 17.42 16 10 O -0.55 -21.54 13.58 -3.02 -0.04 -21.58 16 11 N -0.65 -23.48 5.26 -303.66 -1.60 -25.08 16 12 C 0.15 6.87 6.25 38.10 0.24 7.11 16 13 C -0.24 -11.11 8.66 22.58 0.20 -10.92 16 14 C -0.08 -3.85 10.02 22.20 0.22 -3.62 16 15 C -0.25 -12.33 9.79 22.75 0.22 -12.11 16 16 C 0.09 4.91 5.57 -21.31 -0.12 4.79 16 17 C -0.50 -26.30 9.06 23.46 0.21 -26.09 16 18 H 0.08 3.89 7.90 -2.91 -0.02 3.87 16 19 C 0.04 1.89 5.16 85.25 0.44 2.33 16 20 N -0.82 -40.64 10.94 21.82 0.24 -40.40 16 21 Si 0.98 36.96 29.59 68.60 2.03 38.99 16 22 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 23 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 24 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 25 C -0.20 -10.15 8.60 22.85 0.20 -9.95 16 26 H 0.05 0.84 8.10 -2.39 -0.02 0.82 16 27 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 29 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.42 8.76 7.79 -92.71 -0.72 8.04 16 32 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 1.62 7.46 -2.39 -0.02 1.60 16 34 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.42 12.66 8.10 -92.71 -0.75 11.91 16 36 H 0.10 4.70 6.47 -2.91 -0.02 4.68 16 37 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 38 H 0.10 4.71 8.06 -2.91 -0.02 4.69 16 39 H 0.29 12.89 8.30 -92.71 -0.77 12.12 16 40 H 0.12 5.91 6.17 -2.91 -0.02 5.90 16 Total: -1.00 -65.95 339.90 2.54 -63.42 By element: Atomic # 1 Polarization: 41.71 SS G_CDS: -0.40 Total: 41.31 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: 4.56 Total: -20.93 kcal Atomic # 7 Polarization: -80.28 SS G_CDS: -3.57 Total: -83.85 kcal Atomic # 8 Polarization: -38.85 SS G_CDS: -0.09 Total: -38.94 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -65.95 2.54 -63.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526248036.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.468 kcal (2) G-P(sol) polarization free energy of solvation -65.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds