Wall clock time and date at job start Tue Mar 31 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 110.77913 * 2 1 4 4 C 1.54937 * 110.72549 * 236.75599 * 2 1 3 5 5 N 1.48531 * 103.22562 * 204.22386 * 4 2 1 6 6 C 1.47894 * 105.82070 * 39.20528 * 5 4 2 7 7 C 1.53994 * 107.05988 * 334.67017 * 6 5 4 8 8 H 1.09000 * 110.39401 * 120.18164 * 7 6 5 9 9 N 1.46502 * 110.30810 * 242.30449 * 7 6 5 10 10 C 1.34777 * 119.99911 * 270.71218 * 9 7 6 11 11 O 1.21586 * 120.00035 * 0.02562 * 10 9 7 12 12 C 1.47538 * 119.99578 * 180.02562 * 10 9 7 13 13 C 1.39669 * 120.19728 * 359.97438 * 12 10 9 14 14 C 1.37830 * 119.91713 * 180.02562 * 13 12 10 15 15 C 1.38575 * 120.32526 * 359.72833 * 14 13 12 16 16 C 1.38025 * 120.39919 * 0.55200 * 15 14 13 17 17 C 1.38838 * 120.07230 * 359.44787 * 16 15 14 18 18 O 1.35514 * 120.16318 * 180.29406 * 17 16 15 19 19 C 1.34822 * 116.99909 * 354.40555 * 18 17 16 20 20 H 1.07993 * 119.99766 * 5.06695 * 19 18 17 21 21 C 1.38695 * 119.99822 * 185.06286 * 19 18 17 22 22 N 1.31516 * 120.00387 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99728 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47406 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47526 * 120.00173 * 23 21 19 26 26 H 1.48508 * 109.46929 * 240.00013 * 23 21 19 27 27 H 1.08991 * 109.47553 * 296.74406 * 1 2 3 28 28 H 1.09004 * 109.46990 * 56.75257 * 1 2 3 29 29 H 1.09009 * 109.46722 * 176.74551 * 1 2 3 30 30 H 1.08997 * 110.66949 * 322.65974 * 4 2 1 31 31 H 1.09003 * 110.66677 * 85.79033 * 4 2 1 32 32 H 1.00900 * 111.00015 * 278.69451 * 5 4 2 33 33 H 1.08995 * 109.92059 * 215.31347 * 6 5 4 34 34 H 1.09003 * 109.91467 * 94.01901 * 6 5 4 35 35 H 0.97001 * 119.99346 * 90.71709 * 9 7 6 36 36 H 1.07998 * 120.04358 * 0.04689 * 13 12 10 37 37 H 1.07999 * 119.83691 * 180.02562 * 14 13 12 38 38 H 1.07989 * 119.80081 * 180.30229 * 15 14 13 39 39 H 1.08001 * 119.96527 * 179.72569 * 16 15 14 40 40 H 0.97002 * 120.00563 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0192 0.0000 4 6 2.0784 -0.7944 -1.2120 5 7 3.4319 -1.2090 -0.7623 6 6 3.2895 -1.5707 0.6647 7 6 2.0771 -0.7927 1.2091 8 1 1.3203 -1.4821 1.5833 9 7 2.4971 0.1250 2.2710 10 6 2.5239 -0.2936 3.5519 11 8 2.2000 -1.4330 3.8260 12 6 2.9464 0.6309 4.6213 13 6 3.3198 1.9404 4.3109 14 6 3.7140 2.7991 5.3144 15 6 3.7366 2.3715 6.6324 16 6 3.3757 1.0785 6.9534 17 6 2.9759 0.1997 5.9557 18 8 2.6156 -1.0684 6.2696 19 6 2.7772 -1.4510 7.5522 20 1 3.1004 -0.7345 8.2927 21 6 2.5283 -2.7647 7.9206 22 7 2.1341 -3.6372 7.0189 23 14 2.7516 -3.2946 9.6979 24 1 3.1981 -2.1332 10.5084 25 1 1.4611 -3.8026 10.2290 26 1 3.7737 -4.3696 9.7693 27 1 -0.3634 0.4624 0.9176 28 1 -0.3633 0.5634 -0.8595 29 1 -0.3633 -1.0261 -0.0583 30 1 1.4562 -1.6663 -1.4138 31 1 2.1445 -0.1555 -2.0926 32 1 4.0975 -0.4600 -0.8807 33 1 4.1887 -1.2869 1.2113 34 1 3.1162 -2.6426 0.7605 35 1 2.7558 1.0339 2.0522 36 1 3.2994 2.2800 3.2859 37 1 4.0021 3.8115 5.0730 38 1 4.0422 3.0528 7.4125 39 1 3.4002 0.7513 7.9824 40 1 1.9603 -4.5561 7.2765 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579465425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:03 Heat of formation + Delta-G solvation = -30.267834 kcal Electronic energy + Delta-G solvation = -23130.063925 eV Core-core repulsion = 19717.481020 eV Total energy + Delta-G solvation = -3412.582905 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.92723 -38.99329 -37.46765 -36.34008 -33.48043 -32.35217 -31.98589 -30.59499 -28.94713 -27.77952 -25.56044 -25.30270 -23.19779 -21.86149 -21.36144 -20.21867 -19.70949 -18.06292 -17.55403 -16.83286 -16.14870 -15.17445 -14.97470 -14.65586 -14.54190 -14.20965 -14.12666 -14.02634 -13.76889 -13.19598 -13.08499 -12.80991 -12.52851 -12.35747 -12.14006 -11.73153 -11.52099 -11.38578 -11.20224 -11.15598 -11.11448 -10.92376 -10.84206 -10.69797 -10.45116 -9.58135 -9.13395 -8.89734 -8.84883 -8.34869 -8.21640 -7.32772 -6.45732 -4.05745 1.69458 2.29694 3.10971 3.12004 3.17716 3.61533 3.71596 3.92455 4.17915 4.50221 4.63077 4.80844 4.90619 5.05160 5.15856 5.20151 5.32432 5.39452 5.46108 5.51649 5.54391 5.68624 5.71947 5.78551 5.87365 5.99471 6.06561 6.09957 6.19760 6.22018 6.54143 6.62968 6.68859 6.89085 6.94525 7.04284 7.21859 7.26539 7.28611 7.67397 7.90674 8.09739 8.93939 9.08240 9.66054 10.68092 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.004679 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.697136 B = 5982.204651 C = 7186.509764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.135 4.135 3 H 0.078 0.922 4 C 0.048 3.952 5 N -0.674 5.674 6 C 0.030 3.970 7 C 0.124 3.876 8 H 0.098 0.902 9 N -0.737 5.737 10 C 0.554 3.446 11 O -0.499 6.499 12 C -0.228 4.228 13 C -0.038 4.038 14 C -0.231 4.231 15 C -0.051 4.051 16 C -0.238 4.238 17 C 0.189 3.811 18 O -0.123 6.123 19 C -0.404 4.404 20 H 0.094 0.906 21 C 0.045 3.955 22 N -0.832 5.832 23 Si 0.941 3.059 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.274 1.274 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.334 0.666 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.390 0.610 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.132 0.868 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.666 9.901 -11.160 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.156 4.156 3 H 0.096 0.904 4 C -0.082 4.082 5 N -0.301 5.301 6 C -0.101 4.101 7 C 0.017 3.983 8 H 0.116 0.884 9 N -0.393 5.393 10 C 0.344 3.656 11 O -0.372 6.372 12 C -0.233 4.233 13 C -0.057 4.057 14 C -0.250 4.250 15 C -0.069 4.069 16 C -0.257 4.257 17 C 0.129 3.871 18 O -0.021 6.021 19 C -0.480 4.480 20 H 0.112 0.888 21 C -0.163 4.163 22 N -0.463 5.463 23 Si 0.765 3.235 24 H -0.190 1.190 25 H -0.200 1.200 26 H -0.200 1.200 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.149 0.851 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.224 0.776 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.253 7.829 -11.358 13.797 hybrid contribution 0.172 1.275 1.340 1.858 sum 0.425 9.104 -10.017 13.543 Atomic orbital electron populations 1.21698 0.93763 1.02322 1.01920 1.22974 0.97312 0.99629 0.95675 0.90382 1.23175 0.90406 0.98539 0.96092 1.62757 1.07661 1.42259 1.17382 1.23241 0.98346 1.01159 0.87346 1.22182 0.97094 0.92015 0.86967 0.88435 1.46004 1.71665 1.15151 1.06454 1.18263 0.77963 0.87702 0.81718 1.90949 1.45707 1.18603 1.81981 1.18850 1.17873 0.95345 0.91210 1.20738 0.95283 0.91776 0.97935 1.20456 1.11800 0.99652 0.93123 1.20895 0.95344 0.94803 0.95897 1.21166 1.09983 0.94491 1.00036 1.19280 0.90001 0.86282 0.91529 1.84173 1.66959 1.21615 1.29392 1.21550 1.48165 0.95645 0.82615 0.88818 1.25387 0.96137 0.94656 1.00131 1.70134 1.38907 1.03789 1.33483 0.85662 0.78444 0.79163 0.80225 1.18964 1.20000 1.19984 0.92255 0.92511 0.92157 0.89849 0.90689 0.85067 0.90847 0.89770 0.77558 0.87217 0.87314 0.87183 0.85063 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.16 37.16 0.34 -1.05 16 2 C -0.14 -1.41 3.37 -88.76 -0.30 -1.71 16 3 H 0.08 0.73 7.76 -51.92 -0.40 0.33 16 4 C 0.05 0.46 6.99 -1.90 -0.01 0.45 16 5 N -0.67 -7.67 7.51 -110.09 -0.83 -8.50 16 6 C 0.03 0.42 7.32 -2.76 -0.02 0.40 16 7 C 0.12 1.79 2.92 -66.58 -0.19 1.59 16 8 H 0.10 1.69 7.26 -51.93 -0.38 1.31 16 9 N -0.74 -11.63 4.96 -53.53 -0.27 -11.90 16 10 C 0.55 12.02 7.76 -12.47 -0.10 11.92 16 11 O -0.50 -13.52 14.82 -16.56 -0.25 -13.77 16 12 C -0.23 -4.92 5.89 -104.81 -0.62 -5.53 16 13 C -0.04 -0.65 9.54 -39.20 -0.37 -1.03 16 14 C -0.23 -3.76 10.03 -39.61 -0.40 -4.16 16 15 C -0.05 -0.89 10.03 -39.54 -0.40 -1.29 16 16 C -0.24 -5.10 9.16 -39.44 -0.36 -5.46 16 17 C 0.19 4.68 6.66 -38.60 -0.26 4.43 16 18 O -0.12 -3.64 7.84 -21.06 -0.17 -3.80 16 19 C -0.40 -11.43 9.49 30.90 0.29 -11.14 16 20 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 21 C 0.04 1.25 5.49 -17.52 -0.10 1.15 16 22 N -0.83 -25.10 13.67 55.48 0.76 -24.34 16 23 Si 0.94 20.53 29.55 -169.99 -5.02 15.51 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.62 8.10 -51.92 -0.42 0.20 16 30 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.33 3.26 8.92 -39.29 -0.35 2.91 16 33 H 0.07 1.11 7.92 -51.93 -0.41 0.69 16 34 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.39 4.95 6.41 -40.82 -0.26 4.69 16 36 H 0.11 1.43 6.40 -52.49 -0.34 1.09 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -33.91 332.09 -8.47 -42.38 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -5.22 Total: 10.84 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -2.49 Total: -11.43 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.33 Total: -44.74 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.41 Total: -17.57 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.91 -8.47 -42.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579465425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.113 kcal (2) G-P(sol) polarization free energy of solvation -33.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds