Wall clock time and date at job start Tue Mar 31 2020 06:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09008 * 110.77913 * 2 1 4 4 C 1.54937 * 110.72549 * 236.75599 * 2 1 3 5 5 N 1.48531 * 103.22562 * 204.22386 * 4 2 1 6 6 C 1.47894 * 105.82070 * 39.20528 * 5 4 2 7 7 C 1.53994 * 107.05988 * 334.67017 * 6 5 4 8 8 H 1.09000 * 110.39401 * 120.18164 * 7 6 5 9 9 N 1.46502 * 110.30810 * 242.30449 * 7 6 5 10 10 C 1.34777 * 119.99911 * 270.71218 * 9 7 6 11 11 O 1.21586 * 120.00035 * 0.02562 * 10 9 7 12 12 C 1.47538 * 119.99578 * 180.02562 * 10 9 7 13 13 C 1.39669 * 120.19728 * 359.97438 * 12 10 9 14 14 C 1.37830 * 119.91713 * 180.02562 * 13 12 10 15 15 C 1.38575 * 120.32526 * 359.72833 * 14 13 12 16 16 C 1.38025 * 120.39919 * 0.55200 * 15 14 13 17 17 C 1.38838 * 120.07230 * 359.44787 * 16 15 14 18 18 O 1.35514 * 120.16318 * 180.29406 * 17 16 15 19 19 C 1.34822 * 116.99909 * 354.40555 * 18 17 16 20 20 H 1.07993 * 119.99766 * 5.06695 * 19 18 17 21 21 C 1.38695 * 119.99822 * 185.06286 * 19 18 17 22 22 N 1.31516 * 120.00387 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99728 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47406 * 359.97438 * 23 21 19 25 25 H 1.48505 * 109.47526 * 120.00173 * 23 21 19 26 26 H 1.48508 * 109.46929 * 240.00013 * 23 21 19 27 27 H 1.08991 * 109.47553 * 296.74406 * 1 2 3 28 28 H 1.09004 * 109.46990 * 56.75257 * 1 2 3 29 29 H 1.09009 * 109.46722 * 176.74551 * 1 2 3 30 30 H 1.08997 * 110.66949 * 322.65974 * 4 2 1 31 31 H 1.09003 * 110.66677 * 85.79033 * 4 2 1 32 32 H 1.00900 * 111.00015 * 278.69451 * 5 4 2 33 33 H 1.08995 * 109.92059 * 215.31347 * 6 5 4 34 34 H 1.09003 * 109.91467 * 94.01901 * 6 5 4 35 35 H 0.97001 * 119.99346 * 90.71709 * 9 7 6 36 36 H 1.07998 * 120.04358 * 0.04689 * 13 12 10 37 37 H 1.07999 * 119.83691 * 180.02562 * 14 13 12 38 38 H 1.07989 * 119.80081 * 180.30229 * 15 14 13 39 39 H 1.08001 * 119.96527 * 179.72569 * 16 15 14 40 40 H 0.97002 * 120.00563 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0192 0.0000 4 6 2.0784 -0.7944 -1.2120 5 7 3.4319 -1.2090 -0.7623 6 6 3.2895 -1.5707 0.6647 7 6 2.0771 -0.7927 1.2091 8 1 1.3203 -1.4821 1.5833 9 7 2.4971 0.1250 2.2710 10 6 2.5239 -0.2936 3.5519 11 8 2.2000 -1.4330 3.8260 12 6 2.9464 0.6309 4.6213 13 6 3.3198 1.9404 4.3109 14 6 3.7140 2.7991 5.3144 15 6 3.7366 2.3715 6.6324 16 6 3.3757 1.0785 6.9534 17 6 2.9759 0.1997 5.9557 18 8 2.6156 -1.0684 6.2696 19 6 2.7772 -1.4510 7.5522 20 1 3.1004 -0.7345 8.2927 21 6 2.5283 -2.7647 7.9206 22 7 2.1341 -3.6372 7.0189 23 14 2.7516 -3.2946 9.6979 24 1 3.1981 -2.1332 10.5084 25 1 1.4611 -3.8026 10.2290 26 1 3.7737 -4.3696 9.7693 27 1 -0.3634 0.4624 0.9176 28 1 -0.3633 0.5634 -0.8595 29 1 -0.3633 -1.0261 -0.0583 30 1 1.4562 -1.6663 -1.4138 31 1 2.1445 -0.1555 -2.0926 32 1 4.0975 -0.4600 -0.8807 33 1 4.1887 -1.2869 1.2113 34 1 3.1162 -2.6426 0.7605 35 1 2.7558 1.0339 2.0522 36 1 3.2994 2.2800 3.2859 37 1 4.0021 3.8115 5.0730 38 1 4.0422 3.0528 7.4125 39 1 3.4002 0.7513 7.9824 40 1 1.9603 -4.5561 7.2765 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579465425.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:03 Heat of formation + Delta-G solvation = -56.502361 kcal Electronic energy + Delta-G solvation = -23131.201539 eV Core-core repulsion = 19717.481020 eV Total energy + Delta-G solvation = -3413.720519 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.45279 -40.43161 -39.02062 -38.02297 -34.98281 -34.33015 -32.95942 -32.09735 -30.58459 -29.00826 -27.37754 -26.41440 -24.70130 -23.29513 -22.68697 -21.43407 -21.18248 -19.86007 -19.16961 -18.03508 -17.82290 -16.65516 -16.30229 -16.25197 -15.94409 -15.67005 -15.63826 -15.40142 -15.29995 -14.89420 -14.40819 -14.21573 -14.05209 -13.56287 -13.39184 -13.16593 -13.00724 -12.71529 -12.56394 -12.48318 -12.32687 -12.29074 -12.12385 -12.10464 -11.73594 -11.42841 -10.85879 -10.62765 -10.39275 -9.86611 -9.42310 -9.04536 -8.46082 -6.17212 0.10860 0.71280 1.31299 1.41983 1.51265 2.07763 2.14445 2.21407 2.86319 3.19918 3.22593 3.45325 3.53296 3.84569 3.95390 3.98252 4.06382 4.11056 4.27473 4.39194 4.49873 4.54291 4.56733 4.64339 4.79308 4.86333 4.96041 5.00338 5.02821 5.06641 5.11486 5.12669 5.28457 5.46562 5.58956 5.59939 5.65795 5.68352 5.94854 6.15684 6.43206 6.67306 6.93371 7.47704 7.79098 8.74685 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016450 B = 0.004679 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.697136 B = 5982.204651 C = 7186.509764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 H 0.105 0.895 4 C 0.052 3.948 5 N -0.673 5.673 6 C 0.037 3.963 7 C 0.118 3.882 8 H 0.057 0.943 9 N -0.708 5.708 10 C 0.548 3.452 11 O -0.567 6.567 12 C -0.246 4.246 13 C -0.029 4.029 14 C -0.200 4.200 15 C -0.040 4.040 16 C -0.258 4.258 17 C 0.148 3.852 18 O -0.189 6.189 19 C -0.427 4.427 20 H 0.107 0.893 21 C -0.022 4.022 22 N -0.906 5.906 23 Si 1.022 2.978 24 H -0.245 1.245 25 H -0.268 1.268 26 H -0.269 1.269 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.049 0.951 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.349 0.651 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.410 0.590 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 14.905 -12.673 19.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.140 4.140 3 H 0.123 0.877 4 C -0.078 4.078 5 N -0.300 5.300 6 C -0.095 4.095 7 C 0.011 3.989 8 H 0.076 0.924 9 N -0.364 5.364 10 C 0.338 3.662 11 O -0.446 6.446 12 C -0.250 4.250 13 C -0.048 4.048 14 C -0.219 4.219 15 C -0.058 4.058 16 C -0.277 4.277 17 C 0.093 3.907 18 O -0.091 6.091 19 C -0.503 4.503 20 H 0.124 0.876 21 C -0.221 4.221 22 N -0.542 5.542 23 Si 0.841 3.159 24 H -0.168 1.168 25 H -0.193 1.193 26 H -0.194 1.194 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.095 0.905 31 H 0.129 0.871 32 H 0.166 0.834 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.249 0.751 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.587 12.965 -12.935 18.383 hybrid contribution -0.138 0.162 1.541 1.555 sum 1.448 13.127 -11.394 17.443 Atomic orbital electron populations 1.21704 0.93426 1.02109 1.02414 1.22945 0.97459 1.00262 0.93353 0.87702 1.23262 0.88999 0.98818 0.96707 1.62676 1.09157 1.43425 1.14770 1.22982 0.97495 0.99665 0.89314 1.22304 0.96538 0.92205 0.87835 0.92431 1.45702 1.69739 1.16129 1.04786 1.18568 0.77205 0.86890 0.83537 1.90934 1.48865 1.21524 1.83274 1.19311 1.18113 0.97474 0.90140 1.21292 0.93111 0.89353 1.00997 1.21181 1.07323 1.01520 0.91832 1.21437 0.92910 0.93306 0.98173 1.21302 1.11218 0.96114 0.99076 1.20111 0.90879 0.85838 0.93917 1.84181 1.70930 1.24226 1.29810 1.22079 1.48546 0.96487 0.83212 0.87580 1.26762 0.95583 0.94355 1.05447 1.70328 1.43055 1.04269 1.36506 0.84502 0.78576 0.79117 0.73732 1.16792 1.19342 1.19401 0.93840 0.89496 0.93219 0.90523 0.87142 0.83409 0.91996 0.92465 0.75134 0.82239 0.81773 0.82867 0.85995 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.16 71.98 0.66 -1.89 16 2 C -0.12 -2.21 3.37 -9.59 -0.03 -2.24 16 3 H 0.10 1.44 7.76 -2.38 -0.02 1.42 16 4 C 0.05 0.85 6.99 86.65 0.61 1.46 16 5 N -0.67 -14.12 7.51 -502.23 -3.77 -17.89 16 6 C 0.04 1.07 7.32 86.45 0.63 1.71 16 7 C 0.12 3.46 2.92 45.87 0.13 3.59 16 8 H 0.06 2.18 7.26 -2.39 -0.02 2.17 16 9 N -0.71 -22.02 4.96 -441.54 -2.19 -24.21 16 10 C 0.55 24.84 7.76 86.70 0.67 25.52 16 11 O -0.57 -33.74 14.82 16.91 0.25 -33.48 16 12 C -0.25 -10.63 5.89 -19.99 -0.12 -10.75 16 13 C -0.03 -0.86 9.54 22.52 0.21 -0.65 16 14 C -0.20 -5.24 10.03 22.25 0.22 -5.01 16 15 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 16 C -0.26 -11.05 9.16 22.36 0.20 -10.84 16 17 C 0.15 7.66 6.66 22.91 0.15 7.81 16 18 O -0.19 -12.13 7.84 0.82 0.01 -12.12 16 19 C -0.43 -26.08 9.49 67.93 0.64 -25.44 16 20 H 0.11 5.81 5.21 -2.91 -0.02 5.80 16 21 C -0.02 -1.34 5.49 84.85 0.47 -0.87 16 22 N -0.91 -59.86 13.67 21.62 0.30 -59.57 16 23 Si 1.02 44.65 29.55 68.60 2.03 46.67 16 24 H -0.24 -9.65 7.11 99.48 0.71 -8.94 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 29 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 30 H 0.08 1.41 8.02 -2.39 -0.02 1.39 16 31 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.35 5.72 8.92 -89.69 -0.80 4.92 16 33 H 0.06 1.92 7.92 -2.39 -0.02 1.90 16 34 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.41 9.04 6.41 -92.71 -0.59 8.44 16 36 H 0.16 3.07 6.40 -2.91 -0.02 3.05 16 37 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 38 H 0.15 3.47 8.06 -2.92 -0.02 3.44 16 39 H 0.12 5.32 5.64 -2.91 -0.02 5.31 16 40 H 0.27 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -88.13 332.09 0.99 -87.14 By element: Atomic # 1 Polarization: 32.40 SS G_CDS: -0.31 Total: 32.08 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 4.68 Total: -18.63 kcal Atomic # 7 Polarization: -96.00 SS G_CDS: -5.67 Total: -101.66 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: 0.26 Total: -45.61 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -88.13 0.99 -87.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579465425.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.639 kcal (2) G-P(sol) polarization free energy of solvation -88.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds