Wall clock time and date at job start Tue Mar 31 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.34781 * 119.99874 * 85.00543 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00101 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47006 * 179.97438 * 16 15 13 18 18 C 1.38352 * 119.85447 * 269.72953 * 17 16 15 19 19 C 1.37954 * 120.14919 * 179.72514 * 18 17 16 20 20 C 1.39586 * 119.84755 * 0.54334 * 19 18 17 21 21 C 1.47847 * 120.14243 * 179.70646 * 20 19 18 22 22 N 1.34783 * 120.00069 * 0.02562 * 21 20 19 23 23 O 1.21551 * 120.00091 * 180.02562 * 21 20 19 24 24 C 1.39569 * 119.70959 * 359.72795 * 20 19 18 25 25 C 1.37950 * 119.85573 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 30 30 H 0.97002 * 120.00410 * 264.99761 * 12 2 1 31 31 H 1.09002 * 109.46880 * 299.99754 * 15 13 12 32 32 H 1.09003 * 109.46851 * 59.99965 * 15 13 12 33 33 H 1.09002 * 109.47281 * 299.99730 * 16 15 13 34 34 H 1.08997 * 109.47550 * 59.99777 * 16 15 13 35 35 H 1.08005 * 119.92745 * 359.97438 * 18 17 16 36 36 H 1.07999 * 120.08089 * 180.24586 * 19 18 17 37 37 H 0.96993 * 119.99941 * 0.02562 * 22 21 20 38 38 H 0.96996 * 119.99761 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.07002 * 179.97438 * 24 20 19 40 40 H 1.08003 * 119.93030 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5875 16 6 2.7007 0.2543 -4.7588 17 6 3.2041 -0.4559 -5.9890 18 6 4.5603 -0.4846 -6.2612 19 6 5.0283 -1.1378 -7.3825 20 6 4.1291 -1.7608 -8.2495 21 6 4.6229 -2.4571 -9.4567 22 7 5.9440 -2.4917 -9.7217 23 8 3.8376 -2.9984 -10.2101 24 6 2.7617 -1.7232 -7.9721 25 6 2.3075 -1.0719 -6.8441 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9040 -0.5274 4.4375 30 1 2.2490 -1.6319 -1.1526 31 1 3.6492 -1.1205 -3.3979 32 1 1.9776 -1.5509 -3.8325 33 1 1.7012 0.6458 -4.9483 34 1 3.3726 1.0769 -4.5141 35 1 5.2546 0.0019 -5.5920 36 1 6.0875 -1.1629 -7.5918 37 1 6.5707 -2.0601 -9.1202 38 1 6.2680 -2.9488 -10.5134 39 1 2.0608 -2.2030 -8.6392 40 1 1.2497 -1.0417 -6.6284 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585743938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:00 Heat of formation + Delta-G solvation = -63.275630 kcal Electronic energy + Delta-G solvation = -21646.574239 eV Core-core repulsion = 18232.560009 eV Total energy + Delta-G solvation = -3414.014230 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.44883 -39.27697 -38.52261 -35.18787 -34.40135 -33.69919 -32.40479 -31.20658 -30.56158 -29.30504 -25.54022 -25.12307 -22.95836 -22.69111 -21.03684 -20.44912 -19.57968 -18.54666 -17.34707 -17.20684 -16.15089 -15.76177 -15.52418 -15.31817 -15.18602 -15.07502 -14.65131 -14.30842 -13.89317 -13.55515 -13.29990 -13.16040 -12.81701 -12.70601 -12.22806 -12.05167 -11.78936 -11.54006 -11.50419 -11.24102 -10.92357 -10.83039 -10.41408 -10.20757 -10.12074 -9.73399 -9.29778 -9.26894 -9.24982 -8.93140 -8.77652 -8.17299 -6.22977 -4.25569 0.52308 1.08217 2.53638 3.12338 3.20405 3.23141 3.33891 3.38254 3.53963 3.93619 4.29830 4.41991 4.44282 4.63675 4.74317 5.01543 5.03985 5.09888 5.11943 5.25917 5.36559 5.55205 5.67160 5.70607 5.85112 5.95548 6.04870 6.11696 6.29438 6.35658 6.36311 6.37713 6.54631 6.59789 6.83891 6.91994 7.17560 7.27645 7.50428 7.86373 8.13078 8.51312 8.73889 8.92085 9.38031 10.89215 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040852 B = 0.002463 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.237828 B =11366.572147 C =11556.156574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.886 3.114 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.702 5.702 13 C 0.502 3.498 14 O -0.559 6.559 15 C -0.135 4.135 16 C -0.071 4.071 17 C -0.045 4.045 18 C -0.125 4.125 19 C -0.083 4.083 20 C -0.152 4.152 21 C 0.565 3.435 22 N -0.853 5.853 23 O -0.543 6.543 24 C -0.055 4.055 25 C -0.125 4.125 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.267 0.733 30 H 0.395 0.605 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.132 0.868 36 H 0.125 0.875 37 H 0.401 0.599 38 H 0.404 0.596 39 H 0.135 0.865 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.726 -1.913 -22.667 23.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.126 4.126 7 N -0.530 5.530 8 Si 0.716 3.284 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.187 1.187 12 N -0.350 5.350 13 C 0.287 3.713 14 O -0.438 6.438 15 C -0.176 4.176 16 C -0.108 4.108 17 C -0.045 4.045 18 C -0.143 4.143 19 C -0.102 4.102 20 C -0.155 4.155 21 C 0.352 3.648 22 N -0.417 5.417 23 O -0.421 6.421 24 C -0.074 4.074 25 C -0.143 4.143 26 H 0.065 0.935 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.229 0.771 31 H 0.110 0.890 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.143 0.857 37 H 0.231 0.769 38 H 0.235 0.765 39 H 0.153 0.847 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 5.884 -1.372 -22.838 23.624 hybrid contribution 0.065 0.216 0.344 0.411 sum 5.950 -1.157 -22.494 23.297 Atomic orbital electron populations 1.22446 0.99347 1.00822 0.99286 1.19094 0.90120 0.94665 0.82923 0.93426 1.21048 1.33270 1.14420 0.88575 0.90223 1.24844 0.95510 0.96733 0.95541 1.69869 1.44903 1.40128 0.98052 0.86863 0.80520 0.83588 0.77424 1.20312 1.22163 1.18673 1.46217 1.65053 1.13864 1.09881 1.20500 0.78448 0.87498 0.84861 1.90653 1.51597 1.16227 1.85344 1.21641 1.03348 0.99359 0.93215 1.20437 1.03316 0.97144 0.89944 1.20287 0.93432 0.95150 0.95672 1.21071 0.95351 1.00296 0.97547 1.21242 0.98828 0.96041 0.94070 1.19825 0.94904 1.04039 0.96744 1.18347 0.82369 0.79010 0.85090 1.43764 1.07780 1.59794 1.30318 1.90814 1.55552 1.46061 1.49679 1.21266 0.94295 0.95681 0.96191 1.21140 1.00299 0.98394 0.94431 0.93491 0.94569 0.92843 0.92279 0.77124 0.89031 0.89118 0.89778 0.89737 0.85057 0.85732 0.76920 0.76501 0.84696 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.55 8.96 37.16 0.33 -3.22 16 2 C 0.24 5.53 2.15 -69.08 -0.15 5.38 16 3 H 0.05 1.24 6.63 -51.93 -0.34 0.89 16 4 C -0.54 -14.30 9.31 -34.44 -0.32 -14.62 16 5 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 6 C 0.08 2.15 5.45 -17.82 -0.10 2.06 16 7 N -0.89 -26.25 13.96 55.43 0.77 -25.48 16 8 Si 0.89 21.63 24.37 -169.99 -4.14 17.49 16 9 H -0.28 -6.53 6.87 56.52 0.39 -6.14 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 12 N -0.70 -13.37 5.07 -54.93 -0.28 -13.65 16 13 C 0.50 8.78 7.79 -10.98 -0.09 8.69 16 14 O -0.56 -11.87 15.64 5.56 0.09 -11.78 16 15 C -0.14 -1.61 5.68 -27.88 -0.16 -1.77 16 16 C -0.07 -0.78 4.63 -27.88 -0.13 -0.91 16 17 C -0.05 -0.43 5.14 -104.53 -0.54 -0.97 16 18 C -0.12 -1.04 9.68 -39.64 -0.38 -1.42 16 19 C -0.08 -0.62 9.54 -39.18 -0.37 -0.99 16 20 C -0.15 -1.41 5.87 -104.97 -0.62 -2.03 16 21 C 0.57 5.54 8.05 -12.33 -0.10 5.44 16 22 N -0.85 -4.65 8.83 30.53 0.27 -4.38 16 23 O -0.54 -7.46 17.18 5.32 0.09 -7.37 16 24 C -0.06 -0.55 9.59 -39.19 -0.38 -0.92 16 25 C -0.12 -1.17 9.68 -39.64 -0.38 -1.55 16 26 H 0.05 1.07 3.27 -51.93 -0.17 0.90 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.40 6.57 8.54 -40.82 -0.35 6.22 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 34 H 0.08 0.99 8.04 -51.93 -0.42 0.57 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.12 0.51 6.41 -52.49 -0.34 0.18 16 37 H 0.40 1.09 6.86 -40.82 -0.28 0.81 16 38 H 0.40 1.70 8.93 -40.82 -0.36 1.33 16 39 H 0.14 1.31 7.65 -52.48 -0.40 0.91 16 40 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 336.44 15.07 5.07 5.07 Total: -1.00 -34.66 336.44 -6.72 -41.39 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -5.22 Total: 5.55 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -3.38 Total: -6.84 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.76 Total: -43.51 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.18 Total: -19.15 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.49 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.66 -6.72 -41.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585743938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.888 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds