Wall clock time and date at job start Tue Mar 31 2020 06:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.50699 * 109.47083 * 119.99946 * 2 1 3 5 5 H 1.07999 * 120.00019 * 119.99669 * 4 2 1 6 6 C 1.37877 * 120.00129 * 299.99954 * 4 2 1 7 7 N 1.31513 * 119.99969 * 180.02562 * 6 4 2 8 8 Si 1.86797 * 119.99840 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47167 * 89.99961 * 8 6 4 10 10 H 1.48500 * 109.47028 * 210.00109 * 8 6 4 11 11 H 1.48497 * 109.47377 * 330.00144 * 8 6 4 12 12 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 13 13 C 1.34781 * 119.99874 * 85.00543 * 12 2 1 14 14 O 1.21278 * 120.00033 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00101 * 179.97438 * 13 12 2 16 16 C 1.52996 * 109.47006 * 179.97438 * 15 13 12 17 17 C 1.50703 * 109.47006 * 179.97438 * 16 15 13 18 18 C 1.38352 * 119.85447 * 269.72953 * 17 16 15 19 19 C 1.37954 * 120.14919 * 179.72514 * 18 17 16 20 20 C 1.39586 * 119.84755 * 0.54334 * 19 18 17 21 21 C 1.47847 * 120.14243 * 179.70646 * 20 19 18 22 22 N 1.34783 * 120.00069 * 0.02562 * 21 20 19 23 23 O 1.21551 * 120.00091 * 180.02562 * 21 20 19 24 24 C 1.39569 * 119.70959 * 359.72795 * 20 19 18 25 25 C 1.37950 * 119.85573 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 0.96999 * 119.99716 * 179.97438 * 7 6 4 30 30 H 0.97002 * 120.00410 * 264.99761 * 12 2 1 31 31 H 1.09002 * 109.46880 * 299.99754 * 15 13 12 32 32 H 1.09003 * 109.46851 * 59.99965 * 15 13 12 33 33 H 1.09002 * 109.47281 * 299.99730 * 16 15 13 34 34 H 1.08997 * 109.47550 * 59.99777 * 16 15 13 35 35 H 1.08005 * 119.92745 * 359.97438 * 18 17 16 36 36 H 1.07999 * 120.08089 * 180.24586 * 19 18 17 37 37 H 0.96993 * 119.99941 * 0.02562 * 22 21 20 38 38 H 0.96996 * 119.99761 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.07002 * 179.97438 * 24 20 19 40 40 H 1.08003 * 119.93030 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1381 -0.8590 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8746 2.6992 10 1 0.9773 1.9954 3.9070 11 1 0.8492 2.1773 1.4923 12 7 2.0183 -0.6907 -1.1961 13 6 2.1470 -0.0183 -2.3572 14 8 1.8583 1.1583 -2.4117 15 6 2.6499 -0.7286 -3.5875 16 6 2.7007 0.2543 -4.7588 17 6 3.2041 -0.4559 -5.9890 18 6 4.5603 -0.4846 -6.2612 19 6 5.0283 -1.1378 -7.3825 20 6 4.1291 -1.7608 -8.2495 21 6 4.6229 -2.4571 -9.4567 22 7 5.9440 -2.4917 -9.7217 23 8 3.8376 -2.9984 -10.2101 24 6 2.7617 -1.7232 -7.9721 25 6 2.3075 -1.0719 -6.8441 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.9040 -0.5274 4.4375 30 1 2.2490 -1.6319 -1.1526 31 1 3.6492 -1.1205 -3.3979 32 1 1.9776 -1.5509 -3.8325 33 1 1.7012 0.6458 -4.9483 34 1 3.3726 1.0769 -4.5141 35 1 5.2546 0.0019 -5.5920 36 1 6.0875 -1.1629 -7.5918 37 1 6.5707 -2.0601 -9.1202 38 1 6.2680 -2.9488 -10.5134 39 1 2.0608 -2.2030 -8.6392 40 1 1.2497 -1.0417 -6.6284 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585743938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:00 Heat of formation + Delta-G solvation = -89.891291 kcal Electronic energy + Delta-G solvation = -21647.728381 eV Core-core repulsion = 18232.560009 eV Total energy + Delta-G solvation = -3415.168372 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.18205 -40.62386 -39.36514 -36.88979 -35.22218 -34.51428 -34.35737 -32.03018 -31.84454 -30.44847 -27.23107 -26.38660 -23.71160 -23.60349 -22.47268 -21.27721 -21.06441 -19.16858 -19.05287 -17.87247 -17.73651 -17.38041 -16.56557 -16.19806 -16.04934 -15.91606 -15.82091 -15.61246 -14.98574 -14.78113 -14.56292 -14.25341 -14.11571 -14.01142 -13.77821 -13.58022 -13.12698 -12.83154 -12.69688 -12.40937 -12.21589 -12.13233 -11.76014 -11.61329 -11.26554 -11.20201 -10.87126 -10.75156 -10.70015 -9.93712 -9.82960 -9.72201 -8.37714 -6.43307 -0.17722 0.43541 1.27835 1.35962 1.45295 1.81314 1.82961 2.26527 2.52053 2.55154 2.89412 2.98701 3.68756 3.83116 3.92294 4.04495 4.08433 4.22891 4.33527 4.45168 4.47627 4.53983 4.58358 4.70771 4.76076 4.85938 4.94280 5.02466 5.12139 5.23914 5.30026 5.34594 5.39217 5.45147 5.65425 5.69097 5.84825 5.94008 6.15093 6.40792 6.59058 6.92752 7.20524 7.27431 7.51133 8.77505 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040852 B = 0.002463 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.237828 B =11366.572147 C =11556.156574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.240 3.760 3 H 0.022 0.978 4 C -0.532 4.532 5 H 0.057 0.943 6 C 0.027 3.973 7 N -0.934 5.934 8 Si 0.939 3.061 9 H -0.261 1.261 10 H -0.293 1.293 11 H -0.262 1.262 12 N -0.704 5.704 13 C 0.500 3.500 14 O -0.597 6.597 15 C -0.122 4.122 16 C -0.064 4.064 17 C -0.051 4.051 18 C -0.127 4.127 19 C -0.072 4.072 20 C -0.162 4.162 21 C 0.561 3.439 22 N -0.829 5.829 23 O -0.592 6.592 24 C -0.071 4.071 25 C -0.128 4.128 26 H 0.039 0.961 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.270 0.730 30 H 0.408 0.592 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.149 0.851 36 H 0.161 0.839 37 H 0.417 0.583 38 H 0.412 0.588 39 H 0.127 0.873 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.552 -1.775 -23.913 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.135 3.865 3 H 0.040 0.960 4 C -0.570 4.570 5 H 0.076 0.924 6 C -0.172 4.172 7 N -0.573 5.573 8 Si 0.767 3.233 9 H -0.187 1.187 10 H -0.220 1.220 11 H -0.187 1.187 12 N -0.353 5.353 13 C 0.288 3.712 14 O -0.479 6.479 15 C -0.161 4.161 16 C -0.102 4.102 17 C -0.051 4.051 18 C -0.144 4.144 19 C -0.091 4.091 20 C -0.165 4.165 21 C 0.348 3.652 22 N -0.394 5.394 23 O -0.474 6.474 24 C -0.090 4.090 25 C -0.146 4.146 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.243 0.757 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.167 0.833 36 H 0.179 0.821 37 H 0.250 0.750 38 H 0.245 0.755 39 H 0.144 0.856 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.762 -1.249 -24.103 25.065 hybrid contribution -0.077 0.145 0.675 0.695 sum 6.685 -1.104 -23.428 24.388 Atomic orbital electron populations 1.22343 0.97978 1.01626 0.99383 1.18738 0.91119 0.93181 0.83479 0.96042 1.21283 1.32239 1.13541 0.89957 0.92447 1.25572 0.96890 0.99351 0.95426 1.69976 1.46735 1.41954 0.98650 0.85996 0.79745 0.80402 0.77165 1.18671 1.22044 1.18692 1.46089 1.65466 1.14458 1.09293 1.21426 0.77092 0.87095 0.85566 1.90636 1.53078 1.18196 1.85988 1.21632 1.04722 0.99445 0.90347 1.20316 1.02728 0.96841 0.90272 1.20167 0.94158 0.95587 0.95182 1.21326 0.95063 1.00026 0.98015 1.21558 1.00330 0.94349 0.92833 1.19950 0.95078 1.04424 0.97049 1.18517 0.83244 0.78611 0.84839 1.43590 1.06592 1.58616 1.30581 1.90792 1.57029 1.48364 1.51252 1.21316 0.94862 0.96348 0.96490 1.21207 1.00826 0.98307 0.94266 0.94274 0.93509 0.91685 0.92087 0.75678 0.86756 0.86821 0.90811 0.90464 0.83315 0.82117 0.75020 0.75542 0.85552 0.84313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.62 8.96 71.98 0.65 -5.98 16 2 C 0.24 11.12 2.15 44.25 0.10 11.21 16 3 H 0.02 1.12 6.63 -2.39 -0.02 1.11 16 4 C -0.53 -28.52 9.31 25.60 0.24 -28.28 16 5 H 0.06 3.26 7.98 -2.91 -0.02 3.24 16 6 C 0.03 1.52 5.45 84.65 0.46 1.98 16 7 N -0.93 -55.51 13.96 21.45 0.30 -55.22 16 8 Si 0.94 44.38 24.37 68.60 1.67 46.05 16 9 H -0.26 -11.61 6.87 99.48 0.68 -10.92 16 10 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 11 H -0.26 -12.30 6.53 99.48 0.65 -11.65 16 12 N -0.70 -25.97 5.07 -446.09 -2.26 -28.23 16 13 C 0.50 16.75 7.79 87.66 0.68 17.43 16 14 O -0.60 -24.93 15.64 -3.02 -0.05 -24.97 16 15 C -0.12 -2.58 5.68 29.85 0.17 -2.41 16 16 C -0.06 -1.29 4.63 29.85 0.14 -1.15 16 17 C -0.05 -0.85 5.14 -19.81 -0.10 -0.95 16 18 C -0.13 -1.71 9.68 22.23 0.22 -1.49 16 19 C -0.07 -0.83 9.54 22.53 0.21 -0.62 16 20 C -0.16 -2.73 5.87 -20.09 -0.12 -2.85 16 21 C 0.56 10.26 8.05 86.79 0.70 10.95 16 22 N -0.83 -7.00 8.83 -175.60 -1.55 -8.55 16 23 O -0.59 -16.29 17.18 -3.88 -0.07 -16.35 16 24 C -0.07 -1.35 9.59 22.52 0.22 -1.13 16 25 C -0.13 -2.22 9.68 22.23 0.22 -2.01 16 26 H 0.04 1.72 3.27 -2.39 -0.01 1.71 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 30 H 0.41 12.96 8.54 -92.71 -0.79 12.17 16 31 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 1.64 8.04 -2.39 -0.02 1.62 16 34 H 0.08 1.68 8.04 -2.39 -0.02 1.66 16 35 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 36 H 0.16 0.57 6.41 -2.91 -0.02 0.55 16 37 H 0.42 0.77 6.86 -92.71 -0.64 0.13 16 38 H 0.41 2.56 8.93 -92.71 -0.83 1.73 16 39 H 0.13 2.54 7.65 -2.91 -0.02 2.52 16 40 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -76.10 336.44 0.58 -75.52 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -1.24 Total: 17.03 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 3.77 Total: -5.28 kcal Atomic # 7 Polarization: -88.48 SS G_CDS: -3.51 Total: -92.00 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.11 Total: -41.33 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.67 Total: 46.05 kcal Total: -76.10 0.58 -75.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585743938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.367 kcal (2) G-P(sol) polarization free energy of solvation -76.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds