Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47619 * 2 1 4 4 C 1.50696 * 109.47242 * 239.99035 * 2 1 3 5 5 H 1.08004 * 120.00141 * 240.00263 * 4 2 1 6 6 C 1.37880 * 119.99994 * 60.00553 * 4 2 1 7 7 N 1.31517 * 119.99901 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00054 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47301 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46912 * 120.00071 * 8 6 4 11 11 H 1.48500 * 109.47187 * 239.99930 * 8 6 4 12 12 N 1.46505 * 109.46662 * 119.99482 * 2 1 3 13 13 C 1.34777 * 120.00115 * 274.99892 * 12 2 1 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00369 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 13 18 18 C 1.38352 * 119.85535 * 269.72948 * 17 16 15 19 19 C 1.37957 * 120.14512 * 179.72611 * 18 17 16 20 20 C 1.39580 * 119.85343 * 0.54518 * 19 18 17 21 21 C 1.47843 * 120.14353 * 179.70877 * 20 19 18 22 22 N 1.34767 * 120.00348 * 0.02562 * 21 20 19 23 23 O 1.21553 * 119.99762 * 180.02562 * 21 20 19 24 24 C 1.39577 * 119.70869 * 359.72546 * 20 19 18 25 25 C 1.37959 * 119.85188 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.46813 * 60.00583 * 1 2 3 27 27 H 1.08997 * 109.47619 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47402 * 300.00642 * 1 2 3 29 29 H 0.96997 * 119.99977 * 180.02562 * 7 6 4 30 30 H 0.97003 * 120.00244 * 94.99922 * 12 2 1 31 31 H 1.09002 * 109.47120 * 59.99760 * 15 13 12 32 32 H 1.08998 * 109.46862 * 300.00562 * 15 13 12 33 33 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 34 34 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 35 35 H 1.08006 * 119.92574 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.07473 * 180.25144 * 19 18 17 37 37 H 0.97005 * 120.00200 * 0.02562 * 22 21 20 38 38 H 0.96998 * 120.00711 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.07314 * 179.97438 * 24 20 19 40 40 H 1.08002 * 119.92451 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6993 -0.2397 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3226 -1.1201 -4.0077 9 1 3.1474 -2.2869 -3.6034 10 1 1.1679 -1.5871 -4.8163 11 1 3.1474 -0.1864 -4.8159 12 7 2.0182 -0.6905 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8580 1.1586 2.4116 15 6 2.6496 -0.7282 3.5876 16 6 2.7004 0.2548 4.7590 17 6 3.2025 -0.4555 5.9895 18 6 2.3046 -1.0656 6.8473 19 6 2.7582 -1.7223 7.9725 20 6 4.1254 -1.7608 8.2508 21 6 4.6180 -2.4573 9.4583 22 7 3.7464 -3.0573 10.2928 23 8 5.8092 -2.4887 9.6983 24 6 5.0255 -1.1385 7.3843 25 6 4.5592 -0.4904 6.2592 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.7091 1.1610 -3.4845 30 1 2.2489 -1.6317 1.1529 31 1 3.6490 -1.1201 3.3982 32 1 1.9774 -1.5505 3.8327 33 1 1.7009 0.6463 4.9483 34 1 3.3724 1.0773 4.5141 35 1 1.2465 -1.0310 6.6333 36 1 2.0565 -2.2016 8.6392 37 1 2.7958 -3.0326 10.1011 38 1 4.0695 -3.5140 11.0853 39 1 6.0846 -1.1642 7.5941 40 1 5.2545 -0.0081 5.5881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585743941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = -71.586137 kcal Electronic energy + Delta-G solvation = -21580.023983 eV Core-core repulsion = 18165.649382 eV Total energy + Delta-G solvation = -3414.374601 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.41687 -39.12922 -38.43385 -34.97040 -34.35589 -33.63370 -32.37895 -31.17151 -30.21350 -28.64671 -25.41148 -25.18607 -22.92214 -22.60835 -20.95929 -20.40772 -19.37248 -18.52251 -17.21407 -17.16356 -15.99953 -15.60447 -15.31667 -15.21627 -15.07150 -15.04825 -14.56594 -14.25192 -13.85558 -13.53664 -13.25745 -12.84605 -12.73384 -12.38349 -11.91619 -11.72202 -11.52816 -11.41480 -11.08965 -10.98481 -10.86809 -10.71794 -10.39028 -10.31549 -10.25686 -10.10438 -9.25921 -9.18402 -9.05702 -8.85257 -8.56655 -7.91948 -6.14021 -4.23247 0.55767 1.11589 2.56491 3.14300 3.22333 3.30228 3.32778 3.39424 3.57817 4.07152 4.34573 4.46946 4.47472 4.67801 4.81607 5.06930 5.10557 5.16832 5.18366 5.31516 5.44438 5.62323 5.71808 5.81577 5.91573 5.98753 6.08989 6.19505 6.37854 6.42609 6.63531 6.80781 6.93827 6.94624 7.13779 7.45237 7.54877 7.68234 7.88347 7.90149 8.13725 8.66092 8.76902 9.12409 9.44622 10.91982 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034394 B = 0.002413 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.902713 B =11601.591372 C =11909.488497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.710 5.710 13 C 0.499 3.501 14 O -0.557 6.557 15 C -0.136 4.136 16 C -0.071 4.071 17 C -0.044 4.044 18 C -0.125 4.125 19 C -0.084 4.084 20 C -0.153 4.153 21 C 0.565 3.435 22 N -0.853 5.853 23 O -0.543 6.543 24 C -0.055 4.055 25 C -0.125 4.125 26 H 0.090 0.910 27 H 0.026 0.974 28 H 0.014 0.986 29 H 0.264 0.736 30 H 0.389 0.611 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.401 0.599 38 H 0.404 0.596 39 H 0.135 0.865 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.102 -7.379 21.606 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.358 5.358 13 C 0.284 3.716 14 O -0.437 6.437 15 C -0.176 4.176 16 C -0.109 4.109 17 C -0.044 4.044 18 C -0.143 4.143 19 C -0.102 4.102 20 C -0.156 4.156 21 C 0.352 3.648 22 N -0.417 5.417 23 O -0.421 6.421 24 C -0.074 4.074 25 C -0.143 4.143 26 H 0.108 0.892 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.074 0.926 30 H 0.221 0.779 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.231 0.769 38 H 0.235 0.765 39 H 0.153 0.847 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.593 -6.332 21.460 22.524 hybrid contribution -0.049 -1.190 -0.660 1.362 sum 2.544 -7.522 20.800 22.264 Atomic orbital electron populations 1.22071 0.98511 0.99059 1.00882 1.18740 0.91013 0.93997 0.80141 0.93414 1.21262 1.32349 1.13181 0.90351 0.92045 1.24903 0.94834 0.94967 0.99104 1.69914 1.35956 1.22460 1.23770 0.86393 0.78609 0.79524 0.82565 1.19742 1.20879 1.20864 1.46551 1.65006 1.13565 1.10651 1.20432 0.78732 0.87565 0.84868 1.90658 1.51563 1.16200 1.85288 1.21651 1.03132 0.99285 0.93542 1.20440 1.03276 0.97208 0.89927 1.20314 0.93414 0.95026 0.95661 1.21063 1.00176 0.98544 0.94555 1.21232 0.93987 0.97851 0.97153 1.19816 0.94280 1.04348 0.97167 1.18347 0.85753 0.77766 0.82933 1.43763 1.10890 1.58695 1.28329 1.90814 1.15956 1.60493 1.74855 1.21272 1.00078 0.93568 0.92490 1.21159 0.95327 1.00245 0.97523 0.89183 0.95516 0.96672 0.92629 0.77915 0.89276 0.89398 0.89800 0.89715 0.85114 0.85782 0.76937 0.76525 0.84702 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.26 37.15 0.34 -3.27 16 2 C 0.26 6.62 2.56 -69.08 -0.18 6.44 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.01 8.73 -34.44 -0.30 -14.31 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -24.77 11.32 55.43 0.63 -24.15 16 8 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.71 -14.33 5.07 -54.93 -0.28 -14.61 16 13 C 0.50 9.37 7.79 -10.99 -0.09 9.28 16 14 O -0.56 -12.74 15.65 5.55 0.09 -12.65 16 15 C -0.14 -1.74 5.68 -27.89 -0.16 -1.90 16 16 C -0.07 -0.84 4.63 -27.88 -0.13 -0.97 16 17 C -0.04 -0.44 5.14 -104.53 -0.54 -0.98 16 18 C -0.13 -1.09 9.68 -39.64 -0.38 -1.47 16 19 C -0.08 -0.64 9.54 -39.18 -0.37 -1.01 16 20 C -0.15 -1.47 5.87 -104.97 -0.62 -2.09 16 21 C 0.57 5.66 8.05 -12.33 -0.10 5.57 16 22 N -0.85 -4.78 8.82 30.53 0.27 -4.51 16 23 O -0.54 -7.59 17.18 5.32 0.09 -7.50 16 24 C -0.06 -0.57 9.60 -39.18 -0.38 -0.94 16 25 C -0.12 -1.24 9.68 -39.64 -0.38 -1.62 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.39 6.73 8.54 -40.82 -0.35 6.38 16 31 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 34 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 35 H 0.13 0.95 8.06 -52.48 -0.42 0.52 16 36 H 0.12 0.53 6.41 -52.48 -0.34 0.20 16 37 H 0.40 1.14 6.86 -40.82 -0.28 0.86 16 38 H 0.40 1.75 8.93 -40.82 -0.36 1.38 16 39 H 0.14 1.37 7.65 -52.49 -0.40 0.97 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 343.26 15.07 5.17 5.17 Total: -1.00 -33.83 343.26 -7.77 -41.61 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -5.35 Total: 6.77 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: -3.37 Total: -5.62 kcal Atomic # 7 Polarization: -43.88 SS G_CDS: 0.62 Total: -43.26 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: 0.18 Total: -20.15 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.83 -7.77 -41.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585743941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.977 kcal (2) G-P(sol) polarization free energy of solvation -33.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds