Wall clock time and date at job start Tue Mar 31 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47619 * 2 1 4 4 C 1.50696 * 109.47242 * 239.99035 * 2 1 3 5 5 H 1.08004 * 120.00141 * 240.00263 * 4 2 1 6 6 C 1.37880 * 119.99994 * 60.00553 * 4 2 1 7 7 N 1.31517 * 119.99901 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00054 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47301 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46912 * 120.00071 * 8 6 4 11 11 H 1.48500 * 109.47187 * 239.99930 * 8 6 4 12 12 N 1.46505 * 109.46662 * 119.99482 * 2 1 3 13 13 C 1.34777 * 120.00115 * 274.99892 * 12 2 1 14 14 O 1.21288 * 119.99593 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00369 * 180.02562 * 13 12 2 16 16 C 1.52997 * 109.47466 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 13 18 18 C 1.38352 * 119.85535 * 269.72948 * 17 16 15 19 19 C 1.37957 * 120.14512 * 179.72611 * 18 17 16 20 20 C 1.39580 * 119.85343 * 0.54518 * 19 18 17 21 21 C 1.47843 * 120.14353 * 179.70877 * 20 19 18 22 22 N 1.34767 * 120.00348 * 0.02562 * 21 20 19 23 23 O 1.21553 * 119.99762 * 180.02562 * 21 20 19 24 24 C 1.39577 * 119.70869 * 359.72546 * 20 19 18 25 25 C 1.37959 * 119.85188 * 359.97438 * 24 20 19 26 26 H 1.09004 * 109.46813 * 60.00583 * 1 2 3 27 27 H 1.08997 * 109.47619 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47402 * 300.00642 * 1 2 3 29 29 H 0.96997 * 119.99977 * 180.02562 * 7 6 4 30 30 H 0.97003 * 120.00244 * 94.99922 * 12 2 1 31 31 H 1.09002 * 109.47120 * 59.99760 * 15 13 12 32 32 H 1.08998 * 109.46862 * 300.00562 * 15 13 12 33 33 H 1.09002 * 109.47153 * 59.99773 * 16 15 13 34 34 H 1.09001 * 109.46832 * 299.99964 * 16 15 13 35 35 H 1.08006 * 119.92574 * 359.97438 * 18 17 16 36 36 H 1.08005 * 120.07473 * 180.25144 * 19 18 17 37 37 H 0.97005 * 120.00200 * 0.02562 * 22 21 20 38 38 H 0.96998 * 120.00711 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.07314 * 179.97438 * 24 20 19 40 40 H 1.08002 * 119.92451 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6993 -0.2397 -2.4827 7 7 0.9437 0.8300 -2.6035 8 14 2.3226 -1.1201 -4.0077 9 1 3.1474 -2.2869 -3.6034 10 1 1.1679 -1.5871 -4.8163 11 1 3.1474 -0.1864 -4.8159 12 7 2.0182 -0.6905 1.1963 13 6 2.1469 -0.0181 2.3572 14 8 1.8580 1.1586 2.4116 15 6 2.6496 -0.7282 3.5876 16 6 2.7004 0.2548 4.7590 17 6 3.2025 -0.4555 5.9895 18 6 2.3046 -1.0656 6.8473 19 6 2.7582 -1.7223 7.9725 20 6 4.1254 -1.7608 8.2508 21 6 4.6180 -2.4573 9.4583 22 7 3.7464 -3.0573 10.2928 23 8 5.8092 -2.4887 9.6983 24 6 5.0255 -1.1385 7.3843 25 6 4.5592 -0.4904 6.2592 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 0.7091 1.1610 -3.4845 30 1 2.2489 -1.6317 1.1529 31 1 3.6490 -1.1201 3.3982 32 1 1.9774 -1.5505 3.8327 33 1 1.7009 0.6463 4.9483 34 1 3.3724 1.0773 4.5141 35 1 1.2465 -1.0310 6.6333 36 1 2.0565 -2.2016 8.6392 37 1 2.7958 -3.0326 10.1011 38 1 4.0695 -3.5140 11.0853 39 1 6.0846 -1.1642 7.5941 40 1 5.2545 -0.0081 5.5881 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585743941.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:02 Heat of formation + Delta-G solvation = -96.312728 kcal Electronic energy + Delta-G solvation = -21581.096208 eV Core-core repulsion = 18165.649382 eV Total energy + Delta-G solvation = -3415.446826 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.17491 -40.54380 -39.35376 -36.75942 -35.21702 -34.50644 -34.26442 -31.85629 -31.48986 -30.14487 -27.34072 -26.33179 -23.67144 -23.60328 -22.48186 -21.25859 -20.99287 -19.15842 -18.87569 -17.86760 -17.54328 -17.12740 -16.57411 -16.11318 -16.03829 -15.92362 -15.81769 -15.58908 -14.83452 -14.49844 -14.45953 -14.25945 -14.00533 -13.76223 -13.57714 -13.04453 -12.84802 -12.81344 -12.64179 -12.40048 -12.27513 -12.20423 -12.10967 -11.76370 -11.19989 -11.07957 -10.74818 -10.71173 -10.56120 -9.93797 -9.72311 -9.70084 -8.17274 -6.34510 -0.17710 0.43362 1.44309 1.45593 1.57393 1.81651 1.89374 2.36925 2.54733 2.67918 2.90690 3.13203 3.71434 3.82951 3.93911 4.04786 4.08602 4.22783 4.38965 4.45200 4.54065 4.69795 4.80094 4.85583 4.93541 4.94622 5.11248 5.12675 5.24171 5.29713 5.39062 5.46152 5.63881 5.65648 5.72156 5.85167 5.92753 5.94291 6.12260 6.41393 6.74585 7.02161 7.28016 7.33844 7.62315 8.89114 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034394 B = 0.002413 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.902713 B =11601.591372 C =11909.488497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.972 3.028 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.285 1.285 12 N -0.709 5.709 13 C 0.495 3.505 14 O -0.603 6.603 15 C -0.120 4.120 16 C -0.064 4.064 17 C -0.050 4.050 18 C -0.125 4.125 19 C -0.071 4.071 20 C -0.162 4.162 21 C 0.561 3.439 22 N -0.829 5.829 23 O -0.593 6.593 24 C -0.071 4.071 25 C -0.130 4.130 26 H 0.064 0.936 27 H 0.041 0.959 28 H 0.013 0.987 29 H 0.265 0.735 30 H 0.406 0.594 31 H 0.110 0.890 32 H 0.118 0.882 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.151 0.849 36 H 0.163 0.837 37 H 0.417 0.583 38 H 0.413 0.587 39 H 0.126 0.874 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.574 -9.817 22.709 24.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.014 0.986 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.183 1.183 10 H -0.204 1.204 11 H -0.211 1.211 12 N -0.357 5.357 13 C 0.282 3.718 14 O -0.486 6.486 15 C -0.159 4.159 16 C -0.102 4.102 17 C -0.050 4.050 18 C -0.143 4.143 19 C -0.089 4.089 20 C -0.165 4.165 21 C 0.348 3.652 22 N -0.393 5.393 23 O -0.475 6.475 24 C -0.090 4.090 25 C -0.148 4.148 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.241 0.759 31 H 0.128 0.872 32 H 0.136 0.864 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.168 0.832 36 H 0.181 0.819 37 H 0.250 0.750 38 H 0.245 0.755 39 H 0.144 0.856 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.034 -8.824 22.609 24.355 hybrid contribution 0.078 -0.398 -0.921 1.006 sum 2.111 -9.221 21.688 23.661 Atomic orbital electron populations 1.21886 0.98297 0.99464 0.99549 1.18323 0.91161 0.91861 0.82226 0.98591 1.21594 1.32385 1.13461 0.90858 0.90870 1.25818 0.94952 0.95619 1.02392 1.70062 1.37124 1.23967 1.24499 0.85296 0.78081 0.78509 0.78432 1.18344 1.20435 1.21081 1.46326 1.65247 1.14302 1.09864 1.21478 0.77302 0.87130 0.85844 1.90640 1.53302 1.18553 1.86073 1.21621 1.04493 0.99450 0.90378 1.20308 1.02635 0.96759 0.90497 1.20154 0.93624 0.95805 0.95466 1.21321 1.00908 0.97769 0.94283 1.21565 0.93544 0.96742 0.97072 1.19948 0.95214 1.04344 0.96962 1.18495 0.85459 0.77808 0.83411 1.43578 1.11316 1.56882 1.27540 1.90794 1.18050 1.62568 1.76044 1.21306 1.00087 0.94458 0.93120 1.21198 0.95593 1.00376 0.97620 0.91714 0.94021 0.96762 0.92596 0.75942 0.87222 0.86367 0.90433 0.91355 0.83159 0.81919 0.74990 0.75525 0.85590 0.84643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.66 9.26 71.98 0.67 -5.99 16 2 C 0.27 13.73 2.56 44.24 0.11 13.85 16 3 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 4 C -0.54 -28.54 8.73 25.60 0.22 -28.32 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.01 0.64 5.30 84.66 0.45 1.09 16 7 N -0.92 -52.52 11.32 21.45 0.24 -52.27 16 8 Si 0.97 41.72 29.54 68.60 2.03 43.74 16 9 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 10 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 N -0.71 -28.17 5.07 -446.10 -2.26 -30.43 16 13 C 0.49 18.33 7.79 87.66 0.68 19.01 16 14 O -0.60 -28.22 15.65 -3.05 -0.05 -28.27 16 15 C -0.12 -2.80 5.68 29.85 0.17 -2.63 16 16 C -0.06 -1.44 4.63 29.85 0.14 -1.31 16 17 C -0.05 -0.91 5.14 -19.81 -0.10 -1.02 16 18 C -0.13 -1.75 9.68 22.23 0.22 -1.54 16 19 C -0.07 -0.83 9.54 22.53 0.21 -0.62 16 20 C -0.16 -2.80 5.87 -20.09 -0.12 -2.92 16 21 C 0.56 10.41 8.05 86.79 0.70 11.11 16 22 N -0.83 -7.01 8.82 -175.62 -1.55 -8.56 16 23 O -0.59 -16.51 17.18 -3.88 -0.07 -16.57 16 24 C -0.07 -1.41 9.60 22.53 0.22 -1.19 16 25 C -0.13 -2.46 9.68 22.23 0.22 -2.25 16 26 H 0.06 3.57 6.07 -2.38 -0.01 3.55 16 27 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 30 H 0.41 13.30 8.54 -92.71 -0.79 12.51 16 31 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.12 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.08 1.84 8.04 -2.39 -0.02 1.82 16 34 H 0.07 1.75 8.04 -2.39 -0.02 1.73 16 35 H 0.15 1.54 8.06 -2.91 -0.02 1.52 16 36 H 0.16 0.55 6.41 -2.91 -0.02 0.54 16 37 H 0.42 0.72 6.86 -92.70 -0.64 0.08 16 38 H 0.41 2.56 8.93 -92.71 -0.83 1.73 16 39 H 0.13 2.66 7.65 -2.91 -0.02 2.64 16 40 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -76.30 343.26 0.96 -75.34 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: -1.16 Total: 19.74 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: 3.78 Total: -2.72 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -3.57 Total: -91.26 kcal Atomic # 8 Polarization: -44.73 SS G_CDS: -0.11 Total: -44.84 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -76.30 0.96 -75.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585743941.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.977 kcal (2) G-P(sol) polarization free energy of solvation -76.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds