Wall clock time and date at job start Tue Mar 31 2020 06:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50237 * 2 1 4 4 C 1.53038 * 109.50314 * 120.08241 * 2 1 3 5 5 N 1.46847 * 109.52296 * 60.76038 * 4 2 1 6 6 C 1.38825 * 110.99935 * 185.84099 * 5 4 2 7 7 C 1.39798 * 119.58555 * 160.88289 * 6 5 4 8 8 C 1.38588 * 119.49008 * 179.79101 * 7 6 5 9 9 C 1.38391 * 118.68181 * 0.47618 * 8 7 6 10 10 C 1.40556 * 119.14855 * 359.74573 * 9 8 7 11 11 C 1.41314 * 119.78335 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00664 * 341.35409 * 11 10 9 13 13 C 1.40022 * 119.99724 * 161.34914 * 11 10 9 14 14 N 1.30750 * 120.00092 * 173.25073 * 13 11 10 15 15 Si 1.86798 * 120.00196 * 353.24984 * 13 11 10 16 16 H 1.48496 * 109.47453 * 85.63697 * 15 13 11 17 17 H 1.48507 * 109.47295 * 205.64023 * 15 13 11 18 18 H 1.48498 * 109.47235 * 325.63898 * 15 13 11 19 19 N 1.31954 * 119.58269 * 341.15971 * 6 5 4 20 20 C 1.46842 * 111.19842 * 61.74006 * 5 4 2 21 21 C 1.53040 * 109.52764 * 298.25713 * 20 5 4 22 22 C 1.53116 * 109.30626 * 59.15702 * 21 20 5 23 23 H 1.09009 * 109.51938 * 62.27494 * 22 21 20 24 24 C 1.50701 * 109.52116 * 182.46114 * 22 21 20 25 25 O 1.20819 * 119.99886 * 120.00536 * 24 22 21 26 26 O 1.34229 * 119.99860 * 300.00361 * 24 22 21 27 27 H 1.09001 * 109.47012 * 299.92373 * 1 2 3 28 28 H 1.09008 * 109.46964 * 59.91853 * 1 2 3 29 29 H 1.08995 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46280 * 300.74298 * 4 2 1 31 31 H 1.09001 * 109.45957 * 180.77521 * 4 2 1 32 32 H 1.07996 * 120.25262 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.65990 * 180.23061 * 8 7 6 34 34 H 1.07997 * 120.42738 * 179.77339 * 9 8 7 35 35 H 0.97000 * 119.99983 * 180.02562 * 14 13 11 36 36 H 1.09009 * 109.46045 * 178.23920 * 20 5 4 37 37 H 1.08999 * 109.46364 * 58.27834 * 20 5 4 38 38 H 1.08997 * 109.50391 * 179.11851 * 21 20 5 39 39 H 1.08997 * 109.49851 * 299.19877 * 21 20 5 40 40 H 0.96701 * 117.00268 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7231 1.2483 5 7 1.5675 -2.1131 1.2385 6 6 1.9027 -2.7612 2.4196 7 6 1.2215 -3.9259 2.7851 8 6 1.5607 -4.5736 3.9624 9 6 2.5642 -4.0374 4.7502 10 6 3.2088 -2.8609 4.3309 11 6 4.2350 -2.3014 5.1252 12 1 4.3244 -2.5780 6.1653 13 6 5.1360 -1.3884 4.5636 14 7 6.0011 -0.7711 5.3252 15 14 5.1021 -1.0525 2.7264 16 1 4.0954 -0.0007 2.4339 17 1 6.4424 -0.5920 2.2825 18 1 4.7416 -2.2977 2.0021 19 7 2.8566 -2.2669 3.1857 20 6 2.0845 -2.8419 0.0732 21 6 1.5749 -2.1822 -1.2102 22 6 2.0403 -0.7240 -1.2490 23 1 3.1297 -0.6898 -1.2697 24 6 1.4906 -0.0526 -2.4812 25 8 0.7691 0.9104 -2.3734 26 8 1.8028 -0.5245 -3.6984 27 1 -0.3633 0.5127 0.8907 28 1 -0.3633 0.5151 -0.8893 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6670 -0.2183 2.1390 31 1 3.1309 -0.7107 1.2545 32 1 0.4390 -4.3195 2.1535 33 1 1.0493 -5.4768 4.2612 34 1 2.8487 -4.5170 5.6751 35 1 6.6250 -0.1383 4.9362 36 1 1.7422 -3.8762 0.1106 37 1 3.1742 -2.8197 0.0851 38 1 1.9715 -2.7140 -2.0750 39 1 0.4856 -2.2172 -1.2294 40 1 1.4267 -0.0606 -4.4589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599932133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:36 Heat of formation + Delta-G solvation = -56.912237 kcal Electronic energy + Delta-G solvation = -24019.872550 eV Core-core repulsion = 20606.134257 eV Total energy + Delta-G solvation = -3413.738293 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.92664 -39.53621 -37.81640 -36.28796 -34.26014 -33.28513 -31.80123 -31.06101 -29.47543 -27.17714 -26.14894 -24.89417 -22.79672 -22.19843 -21.40997 -20.55902 -18.67091 -18.14740 -17.69551 -17.10328 -16.42154 -15.93975 -15.16990 -14.90334 -14.76293 -14.51479 -14.02491 -13.79992 -13.62950 -13.45392 -12.90594 -12.75038 -12.53369 -12.25411 -11.93451 -11.60367 -11.49894 -11.39806 -11.37334 -11.06940 -10.82240 -10.68853 -10.56199 -10.39364 -10.27362 -10.17328 -9.94111 -9.46626 -8.74422 -8.40080 -7.88737 -7.36754 -6.93037 -4.72847 2.09187 2.39984 2.59356 2.91888 3.30096 3.38067 3.48469 4.13054 4.23738 4.47640 4.55224 4.68150 4.92703 5.21428 5.30124 5.40005 5.45299 5.49875 5.64269 5.72410 5.77203 5.88136 5.90543 6.01123 6.11463 6.16328 6.19684 6.35183 6.37636 6.45543 6.48358 6.52904 6.63851 6.70953 7.03937 7.17361 7.36681 7.47786 7.62002 7.79169 7.93248 8.15004 8.55079 8.57292 9.45957 10.00221 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019490 B = 0.005851 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.269735 B = 4784.644325 C = 5618.126321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.075 4.075 3 H 0.080 0.920 4 C 0.060 3.940 5 N -0.479 5.479 6 C 0.336 3.664 7 C -0.293 4.293 8 C -0.041 4.041 9 C -0.266 4.266 10 C 0.263 3.737 11 C -0.416 4.416 12 H 0.096 0.904 13 C 0.082 3.918 14 N -0.804 5.804 15 Si 0.988 3.012 16 H -0.261 1.261 17 H -0.331 1.331 18 H -0.269 1.269 19 N -0.591 5.591 20 C 0.063 3.937 21 C -0.106 4.106 22 C -0.080 4.080 23 H 0.106 0.894 24 C 0.486 3.514 25 O -0.508 6.508 26 O -0.517 6.517 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.288 0.712 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.258 -0.826 -14.406 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.094 4.094 3 H 0.098 0.902 4 C -0.067 4.067 5 N -0.200 5.200 6 C 0.103 3.897 7 C -0.318 4.318 8 C -0.065 4.065 9 C -0.289 4.289 10 C 0.138 3.862 11 C -0.447 4.447 12 H 0.114 0.886 13 C -0.139 4.139 14 N -0.428 5.428 15 Si 0.824 3.176 16 H -0.188 1.188 17 H -0.264 1.264 18 H -0.195 1.195 19 N -0.314 5.314 20 C -0.064 4.064 21 C -0.143 4.143 22 C -0.099 4.099 23 H 0.124 0.876 24 C 0.328 3.672 25 O -0.395 6.395 26 O -0.329 6.329 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.180 0.133 -14.167 15.457 hybrid contribution 0.244 -0.190 -0.708 0.772 sum -5.936 -0.057 -14.874 16.015 Atomic orbital electron populations 1.22046 0.93765 1.02707 1.02462 1.21162 0.97927 0.98660 0.91666 0.90215 1.22421 0.99400 0.87686 0.97163 1.59524 1.57044 1.02537 1.00847 1.19421 0.89871 0.90500 0.89950 1.20646 1.08149 1.01112 1.01867 1.20873 0.94914 0.97198 0.93563 1.21623 1.03917 1.00249 1.03077 1.18354 0.91675 0.88720 0.87413 1.19480 1.07791 1.18957 0.98503 0.88600 1.26359 0.92564 0.91792 1.03209 1.69624 1.14697 1.19164 1.39282 0.85034 0.72799 0.79927 0.79884 1.18757 1.26440 1.19530 1.66879 1.18037 1.36049 1.10468 1.22080 0.97938 0.98016 0.88342 1.21641 1.02563 0.92128 0.98014 1.21245 1.02155 0.97010 0.89522 0.87629 1.23578 0.77462 0.81616 0.84514 1.90642 1.34997 1.27011 1.86890 1.84569 1.71151 1.60215 1.16963 0.92922 0.91012 0.91684 0.89605 0.92505 0.87631 0.87708 0.87466 0.90239 0.89552 0.93940 0.90082 0.90041 0.73569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 8.40 37.16 0.31 -1.90 16 2 C -0.08 -1.12 2.42 -90.54 -0.22 -1.34 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.06 1.11 3.55 -3.83 -0.01 1.09 16 5 N -0.48 -8.74 3.90 -173.20 -0.68 -9.42 16 6 C 0.34 7.25 5.97 -155.32 -0.93 6.33 16 7 C -0.29 -5.93 9.55 -38.87 -0.37 -6.30 16 8 C -0.04 -0.83 10.15 -39.40 -0.40 -1.23 16 9 C -0.27 -6.06 9.83 -38.65 -0.38 -6.44 16 10 C 0.26 6.68 6.16 -85.00 -0.52 6.16 16 11 C -0.42 -11.23 9.70 -37.74 -0.37 -11.59 16 12 H 0.10 2.65 8.06 -52.49 -0.42 2.23 16 13 C 0.08 2.19 5.52 -17.34 -0.10 2.10 16 14 N -0.80 -21.52 13.92 55.55 0.77 -20.74 16 15 Si 0.99 23.38 23.19 -169.99 -3.94 19.44 16 16 H -0.26 -5.95 5.46 56.52 0.31 -5.65 16 17 H -0.33 -7.74 7.11 56.52 0.40 -7.34 16 18 H -0.27 -6.56 6.52 56.52 0.37 -6.19 16 19 N -0.59 -14.38 4.02 -10.33 -0.04 -14.42 16 20 C 0.06 0.96 5.36 -3.84 -0.02 0.94 16 21 C -0.11 -1.27 4.95 -26.65 -0.13 -1.40 16 22 C -0.08 -1.03 2.48 -91.65 -0.23 -1.25 16 23 H 0.11 1.30 8.14 -51.92 -0.42 0.88 16 24 C 0.49 5.83 7.33 36.01 0.26 6.09 16 25 O -0.51 -7.28 14.29 -18.74 -0.27 -7.55 16 26 O -0.52 -4.70 13.35 -39.25 -0.52 -5.22 16 27 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.04 5.34 -51.92 -0.28 0.77 16 29 H 0.06 0.94 6.01 -51.93 -0.31 0.63 16 30 H 0.09 1.73 8.06 -51.93 -0.42 1.31 16 31 H 0.06 1.14 3.75 -51.93 -0.19 0.95 16 32 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 34 H 0.11 2.29 8.06 -52.49 -0.42 1.86 16 35 H 0.29 7.03 8.29 -40.82 -0.34 6.70 16 36 H 0.09 1.24 7.74 -51.92 -0.40 0.84 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.97 6.58 -51.93 -0.34 0.63 16 40 H 0.41 1.92 9.10 45.56 0.41 2.34 16 LS Contribution 310.94 15.07 4.69 4.69 Total: -1.00 -29.77 310.94 -7.69 -37.45 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -4.60 Total: 4.55 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -3.10 Total: -8.77 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.06 Total: -44.58 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.79 Total: -12.77 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -3.94 Total: 19.44 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.77 -7.69 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599932133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.459 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds