Wall clock time and date at job start Tue Mar 31 2020 06:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.50237 * 2 1 4 4 C 1.53038 * 109.50314 * 120.08241 * 2 1 3 5 5 N 1.46847 * 109.52296 * 60.76038 * 4 2 1 6 6 C 1.38825 * 110.99935 * 185.84099 * 5 4 2 7 7 C 1.39798 * 119.58555 * 160.88289 * 6 5 4 8 8 C 1.38588 * 119.49008 * 179.79101 * 7 6 5 9 9 C 1.38391 * 118.68181 * 0.47618 * 8 7 6 10 10 C 1.40556 * 119.14855 * 359.74573 * 9 8 7 11 11 C 1.41314 * 119.78335 * 179.97438 * 10 9 8 12 12 H 1.07996 * 120.00664 * 341.35409 * 11 10 9 13 13 C 1.40022 * 119.99724 * 161.34914 * 11 10 9 14 14 N 1.30750 * 120.00092 * 173.25073 * 13 11 10 15 15 Si 1.86798 * 120.00196 * 353.24984 * 13 11 10 16 16 H 1.48496 * 109.47453 * 85.63697 * 15 13 11 17 17 H 1.48507 * 109.47295 * 205.64023 * 15 13 11 18 18 H 1.48498 * 109.47235 * 325.63898 * 15 13 11 19 19 N 1.31954 * 119.58269 * 341.15971 * 6 5 4 20 20 C 1.46842 * 111.19842 * 61.74006 * 5 4 2 21 21 C 1.53040 * 109.52764 * 298.25713 * 20 5 4 22 22 C 1.53116 * 109.30626 * 59.15702 * 21 20 5 23 23 H 1.09009 * 109.51938 * 62.27494 * 22 21 20 24 24 C 1.50701 * 109.52116 * 182.46114 * 22 21 20 25 25 O 1.20819 * 119.99886 * 120.00536 * 24 22 21 26 26 O 1.34229 * 119.99860 * 300.00361 * 24 22 21 27 27 H 1.09001 * 109.47012 * 299.92373 * 1 2 3 28 28 H 1.09008 * 109.46964 * 59.91853 * 1 2 3 29 29 H 1.08995 * 109.47330 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46280 * 300.74298 * 4 2 1 31 31 H 1.09001 * 109.45957 * 180.77521 * 4 2 1 32 32 H 1.07996 * 120.25262 * 359.97438 * 7 6 5 33 33 H 1.07999 * 120.65990 * 180.23061 * 8 7 6 34 34 H 1.07997 * 120.42738 * 179.77339 * 9 8 7 35 35 H 0.97000 * 119.99983 * 180.02562 * 14 13 11 36 36 H 1.09009 * 109.46045 * 178.23920 * 20 5 4 37 37 H 1.08999 * 109.46364 * 58.27834 * 20 5 4 38 38 H 1.08997 * 109.50391 * 179.11851 * 21 20 5 39 39 H 1.08997 * 109.49851 * 299.19877 * 21 20 5 40 40 H 0.96701 * 117.00268 * 180.02562 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0410 -0.7231 1.2483 5 7 1.5675 -2.1131 1.2385 6 6 1.9027 -2.7612 2.4196 7 6 1.2215 -3.9259 2.7851 8 6 1.5607 -4.5736 3.9624 9 6 2.5642 -4.0374 4.7502 10 6 3.2088 -2.8609 4.3309 11 6 4.2350 -2.3014 5.1252 12 1 4.3244 -2.5780 6.1653 13 6 5.1360 -1.3884 4.5636 14 7 6.0011 -0.7711 5.3252 15 14 5.1021 -1.0525 2.7264 16 1 4.0954 -0.0007 2.4339 17 1 6.4424 -0.5920 2.2825 18 1 4.7416 -2.2977 2.0021 19 7 2.8566 -2.2669 3.1857 20 6 2.0845 -2.8419 0.0732 21 6 1.5749 -2.1822 -1.2102 22 6 2.0403 -0.7240 -1.2490 23 1 3.1297 -0.6898 -1.2697 24 6 1.4906 -0.0526 -2.4812 25 8 0.7691 0.9104 -2.3734 26 8 1.8028 -0.5245 -3.6984 27 1 -0.3633 0.5127 0.8907 28 1 -0.3633 0.5151 -0.8893 29 1 -0.3634 -1.0276 -0.0005 30 1 1.6670 -0.2183 2.1390 31 1 3.1309 -0.7107 1.2545 32 1 0.4390 -4.3195 2.1535 33 1 1.0493 -5.4768 4.2612 34 1 2.8487 -4.5170 5.6751 35 1 6.6250 -0.1383 4.9362 36 1 1.7422 -3.8762 0.1106 37 1 3.1742 -2.8197 0.0851 38 1 1.9715 -2.7140 -2.0750 39 1 0.4856 -2.2172 -1.2294 40 1 1.4267 -0.0606 -4.4589 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599932133.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:35 Heat of formation + Delta-G solvation = -75.947988 kcal Electronic energy + Delta-G solvation = -24020.698002 eV Core-core repulsion = 20606.134257 eV Total energy + Delta-G solvation = -3414.563745 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.01237 -40.95728 -39.24200 -37.17353 -35.86959 -34.94608 -33.19980 -32.62901 -31.14468 -28.35374 -27.86211 -26.37695 -24.03892 -23.49993 -22.89299 -22.11501 -19.91491 -19.54059 -19.01259 -18.57617 -17.50768 -17.18607 -16.57430 -16.47205 -16.42992 -16.04847 -15.34275 -15.14322 -15.00024 -14.63451 -14.55680 -14.24362 -14.03061 -13.63674 -13.34739 -12.97451 -12.82214 -12.71716 -12.65076 -12.61264 -12.32066 -12.26113 -12.10071 -11.87506 -11.68364 -11.50971 -11.29480 -11.03957 -10.44022 -10.13633 -9.70836 -9.04836 -8.88012 -6.71338 0.62481 0.83772 1.18513 1.35568 1.48840 1.57270 2.07594 2.32341 2.52709 2.78026 3.42661 3.55568 3.61010 3.88925 3.98138 4.18261 4.19141 4.32165 4.35412 4.48049 4.58622 4.61506 4.66654 4.70968 4.76928 4.80054 4.82863 4.90107 4.95084 5.07988 5.19134 5.21561 5.26534 5.44491 5.50872 5.71932 5.73516 5.81658 5.90925 6.05531 6.28734 6.60981 6.74053 7.03074 7.63533 8.09011 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019490 B = 0.005851 C = 0.004983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.269735 B = 4784.644325 C = 5618.126321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.071 4.071 3 H 0.077 0.923 4 C 0.064 3.936 5 N -0.472 5.472 6 C 0.317 3.683 7 C -0.274 4.274 8 C -0.031 4.031 9 C -0.284 4.284 10 C 0.249 3.751 11 C -0.457 4.457 12 H 0.070 0.930 13 C 0.050 3.950 14 N -0.843 5.843 15 Si 1.038 2.962 16 H -0.256 1.256 17 H -0.328 1.328 18 H -0.280 1.280 19 N -0.607 5.607 20 C 0.059 3.941 21 C -0.094 4.094 22 C -0.084 4.084 23 H 0.111 0.889 24 C 0.498 3.502 25 O -0.535 6.535 26 O -0.507 6.507 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.141 0.859 33 H 0.149 0.851 34 H 0.113 0.887 35 H 0.293 0.707 36 H 0.101 0.899 37 H 0.027 0.973 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.362 -2.306 -17.723 19.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 H 0.095 0.905 4 C -0.064 4.064 5 N -0.193 5.193 6 C 0.085 3.915 7 C -0.297 4.297 8 C -0.055 4.055 9 C -0.306 4.306 10 C 0.123 3.877 11 C -0.490 4.490 12 H 0.088 0.912 13 C -0.167 4.167 14 N -0.469 5.469 15 Si 0.872 3.128 16 H -0.183 1.183 17 H -0.261 1.261 18 H -0.207 1.207 19 N -0.330 5.330 20 C -0.067 4.067 21 C -0.131 4.131 22 C -0.103 4.103 23 H 0.129 0.871 24 C 0.342 3.658 25 O -0.425 6.425 26 O -0.320 6.320 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.056 0.944 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.131 0.869 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.045 0.955 38 H 0.129 0.871 39 H 0.108 0.892 40 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges -8.300 -1.355 -17.526 19.440 hybrid contribution 0.681 0.113 0.207 0.721 sum -7.619 -1.241 -17.319 18.962 Atomic orbital electron populations 1.21954 0.93169 1.02716 1.02165 1.21056 0.98278 0.98343 0.91314 0.90507 1.22285 0.98126 0.88066 0.97892 1.59659 1.56491 1.02481 1.00649 1.20001 0.89347 0.91296 0.90875 1.21153 1.07286 0.99660 1.01634 1.21339 0.93516 0.98095 0.92571 1.21813 1.04903 0.99820 1.04058 1.18473 0.91643 0.89601 0.87961 1.19457 1.10101 1.21404 0.98022 0.91174 1.26915 0.92302 0.91649 1.05825 1.69647 1.16149 1.20825 1.40326 0.84320 0.72731 0.79240 0.76484 1.18254 1.26150 1.20710 1.66796 1.19046 1.36743 1.10431 1.22265 0.97187 0.98890 0.88364 1.21608 1.03015 0.91362 0.97134 1.21180 1.02571 0.97374 0.89151 0.87062 1.23156 0.76697 0.80906 0.85054 1.90647 1.36293 1.28158 1.87379 1.84498 1.70798 1.60000 1.16752 0.93864 0.90649 0.91417 0.92391 0.94436 0.84146 0.83309 0.86899 0.89647 0.88047 0.95450 0.87116 0.89230 0.71003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.86 8.40 71.98 0.60 -3.26 16 2 C -0.07 -2.01 2.42 -10.74 -0.03 -2.03 16 3 H 0.08 2.21 8.14 -2.39 -0.02 2.20 16 4 C 0.06 2.30 3.55 86.33 0.31 2.60 16 5 N -0.47 -16.23 3.90 -701.87 -2.74 -18.97 16 6 C 0.32 13.12 5.97 133.42 0.80 13.92 16 7 C -0.27 -10.01 9.55 22.73 0.22 -9.80 16 8 C -0.03 -1.14 10.15 22.39 0.23 -0.91 16 9 C -0.28 -12.73 9.83 22.87 0.22 -12.50 16 10 C 0.25 12.89 6.16 40.18 0.25 13.14 16 11 C -0.46 -26.04 9.70 23.46 0.23 -25.82 16 12 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 13 C 0.05 2.79 5.52 85.29 0.47 3.26 16 14 N -0.84 -47.50 13.92 21.84 0.30 -47.19 16 15 Si 1.04 49.88 23.19 68.60 1.59 51.47 16 16 H -0.26 -11.87 5.46 99.48 0.54 -11.33 16 17 H -0.33 -15.30 7.11 99.48 0.71 -14.59 16 18 H -0.28 -13.72 6.52 99.48 0.65 -13.07 16 19 N -0.61 -29.55 4.02 -186.59 -0.75 -30.30 16 20 C 0.06 1.60 5.36 86.33 0.46 2.07 16 21 C -0.09 -1.87 4.95 30.65 0.15 -1.72 16 22 C -0.08 -1.89 2.48 -11.46 -0.03 -1.92 16 23 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 24 C 0.50 10.27 7.33 71.24 0.52 10.79 16 25 O -0.53 -13.91 14.29 21.99 0.31 -13.60 16 26 O -0.51 -7.03 13.35 -51.40 -0.69 -7.71 16 27 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.07 2.02 5.34 -2.38 -0.01 2.01 16 29 H 0.07 1.77 6.01 -2.39 -0.01 1.75 16 30 H 0.06 2.37 8.06 -2.39 -0.02 2.35 16 31 H 0.04 1.50 3.75 -2.39 -0.01 1.49 16 32 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 33 H 0.15 4.21 8.06 -2.91 -0.02 4.19 16 34 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 35 H 0.29 15.05 8.29 -92.71 -0.77 14.28 16 36 H 0.10 2.46 7.74 -2.38 -0.02 2.45 16 37 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.71 6.58 -2.39 -0.02 1.69 16 40 H 0.43 2.21 9.10 -74.06 -0.67 1.54 16 Total: -1.00 -66.93 310.94 2.61 -64.32 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.18 Total: 14.17 kcal Atomic # 6 Polarization: -16.59 SS G_CDS: 4.40 Total: -12.19 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -3.19 Total: -96.46 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.37 Total: -21.31 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 1.59 Total: 51.47 kcal Total: -66.93 2.61 -64.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599932133.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.628 kcal (2) G-P(sol) polarization free energy of solvation -66.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds