Wall clock time and date at job start Tue Mar 31 2020 06:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.87431 * 2 1 4 4 C 1.54326 * 109.88407 * 121.17000 * 2 1 3 5 5 H 1.08991 * 110.72349 * 259.97635 * 4 2 1 6 6 O 1.42899 * 110.71951 * 23.25155 * 4 2 1 7 7 C 1.55155 * 102.94241 * 141.60874 * 4 2 1 8 8 C 1.55128 * 101.48736 * 324.33614 * 7 4 2 9 9 N 1.47019 * 109.88385 * 238.97955 * 2 1 3 10 10 C 1.34772 * 125.64667 * 61.60631 * 9 2 1 11 11 O 1.21585 * 120.00436 * 0.02562 * 10 9 2 12 12 N 1.34783 * 120.00489 * 179.97438 * 10 9 2 13 13 C 1.39234 * 120.00631 * 185.40710 * 12 10 9 14 14 C 1.39482 * 119.83767 * 212.73446 * 13 12 10 15 15 C 1.36367 * 120.17432 * 180.02562 * 14 13 12 16 16 C 1.40870 * 119.82376 * 359.97438 * 15 14 13 17 17 C 1.41159 * 120.16032 * 179.97438 * 16 15 14 18 18 H 1.07996 * 119.99989 * 23.04141 * 17 16 15 19 19 C 1.39893 * 119.99554 * 203.03786 * 17 16 15 20 20 N 1.30887 * 119.99758 * 216.77468 * 19 17 16 21 21 Si 1.86803 * 120.00220 * 36.77772 * 19 17 16 22 22 H 1.48497 * 109.47149 * 266.44059 * 21 19 17 23 23 H 1.48503 * 109.46905 * 146.44186 * 21 19 17 24 24 H 1.48493 * 109.47175 * 26.44342 * 21 19 17 25 25 C 1.40870 * 119.67471 * 0.25530 * 16 15 14 26 26 C 1.36373 * 119.82561 * 359.48391 * 25 16 15 27 27 H 1.09004 * 109.47380 * 179.56662 * 1 2 3 28 28 H 1.09003 * 109.47210 * 299.56593 * 1 2 3 29 29 H 1.09004 * 109.47323 * 59.56417 * 1 2 3 30 30 H 0.96701 * 114.00676 * 179.97438 * 6 4 2 31 31 H 1.09000 * 111.00641 * 82.57783 * 7 4 2 32 32 H 1.09003 * 111.00923 * 206.42616 * 7 4 2 33 33 H 1.09002 * 110.49755 * 278.45004 * 8 7 4 34 34 H 1.09001 * 110.34395 * 156.05722 * 8 7 4 35 35 H 0.97004 * 119.99161 * 5.40947 * 12 10 9 36 36 H 1.08004 * 119.90991 * 359.97438 * 14 13 12 37 37 H 1.07998 * 120.09107 * 179.97438 * 15 14 13 38 38 H 0.96992 * 120.00309 * 5.08934 * 20 19 17 39 39 H 1.08001 * 120.08621 * 179.72609 * 25 16 15 40 40 H 1.08008 * 119.91177 * 180.23417 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7511 1.2417 5 1 2.3528 -0.0487 2.0200 6 8 1.0720 -1.6648 1.7328 7 6 3.2875 -1.5151 0.6904 8 6 2.8098 -1.8815 -0.7393 9 7 2.0299 -0.7125 -1.1848 10 6 1.8073 -0.3588 -2.4661 11 8 1.1419 0.6272 -2.7178 12 7 2.3232 -1.0973 -3.4686 13 6 2.1894 -0.6714 -4.7874 14 6 2.0650 -1.6108 -5.8109 15 6 1.9341 -1.2013 -7.1050 16 6 1.9242 0.1747 -7.4068 17 6 1.7897 0.6065 -8.7440 18 1 1.3335 -0.0418 -9.4775 19 6 2.2472 1.8742 -9.1189 20 7 1.5814 2.5758 -10.0009 21 14 3.8082 2.5658 -8.3610 22 1 3.4593 3.3969 -7.1809 23 1 4.5167 3.4018 -9.3632 24 1 4.6894 1.4486 -7.9365 25 6 2.0552 1.1174 -6.3683 26 6 2.1800 0.6927 -5.0784 27 1 -0.3634 -1.0277 -0.0078 28 1 -0.3634 0.5071 0.8939 29 1 -0.3634 0.5206 -0.8861 30 1 1.3525 -2.1627 2.5129 31 1 4.1654 -0.8698 0.6593 32 1 3.4852 -2.4128 1.2764 33 1 2.1801 -2.7709 -0.7151 34 1 3.6655 -2.0393 -1.3959 35 1 2.7877 -1.9257 -3.2712 36 1 2.0732 -2.6654 -5.5779 37 1 1.8383 -1.9298 -7.8965 38 1 0.7330 2.2498 -10.3395 39 1 2.0530 2.1739 -6.5926 40 1 2.2767 1.4144 -4.2807 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672506258.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:03 Heat of formation + Delta-G solvation = -75.385420 kcal Electronic energy + Delta-G solvation = -22982.937850 eV Core-core repulsion = 19568.398499 eV Total energy + Delta-G solvation = -3414.539350 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.73986 -40.07713 -38.86497 -36.36731 -36.20437 -35.00548 -32.38491 -31.95216 -31.62258 -30.53602 -26.66657 -26.41941 -24.05673 -23.52440 -22.67940 -21.73970 -20.49630 -20.15988 -19.24287 -18.37183 -18.00597 -17.11161 -16.38235 -16.23694 -16.11479 -15.85156 -15.37200 -15.17696 -14.58655 -14.52171 -14.33605 -14.19032 -13.95425 -13.73129 -13.56789 -13.32969 -12.99435 -12.89265 -12.58520 -12.52254 -12.09432 -12.05935 -11.97446 -11.66287 -11.53172 -11.27491 -10.90847 -10.84860 -10.65140 -9.72791 -9.62145 -9.46676 -8.92843 -6.40796 0.74272 0.92189 1.39206 1.49310 1.60050 1.73892 2.11642 2.19939 2.54674 3.04544 3.23424 3.50787 3.52634 3.70488 4.05483 4.22293 4.27211 4.33751 4.36950 4.49129 4.62494 4.68527 4.69266 4.72950 4.95274 5.01136 5.02715 5.04383 5.14354 5.24965 5.30959 5.41498 5.43216 5.51017 5.67988 5.90789 5.95573 6.11305 6.15656 6.46077 6.67805 6.82738 6.98098 7.02686 7.61358 7.84878 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032086 B = 0.003562 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.455280 B = 7858.745811 C = 8003.170049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.146 3.854 3 H 0.075 0.925 4 C 0.107 3.893 5 H 0.106 0.894 6 O -0.570 6.570 7 C -0.149 4.149 8 C 0.091 3.909 9 N -0.632 5.632 10 C 0.707 3.293 11 O -0.621 6.621 12 N -0.657 5.657 13 C 0.021 3.979 14 C -0.085 4.085 15 C -0.219 4.219 16 C 0.071 3.929 17 C -0.560 4.560 18 H 0.057 0.943 19 C 0.030 3.970 20 N -0.813 5.813 21 Si 1.089 2.911 22 H -0.269 1.269 23 H -0.265 1.265 24 H -0.262 1.262 25 C -0.247 4.247 26 C -0.073 4.073 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.028 0.972 30 H 0.399 0.601 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.412 0.588 36 H 0.137 0.863 37 H 0.109 0.891 38 H 0.285 0.715 39 H 0.092 0.908 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.766 -10.119 24.827 27.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.043 3.957 3 H 0.093 0.907 4 C 0.048 3.952 5 H 0.124 0.876 6 O -0.379 6.379 7 C -0.187 4.187 8 C -0.031 4.031 9 N -0.370 5.370 10 C 0.410 3.590 11 O -0.502 6.502 12 N -0.305 5.305 13 C -0.073 4.073 14 C -0.106 4.106 15 C -0.239 4.239 16 C 0.068 3.932 17 C -0.588 4.588 18 H 0.075 0.925 19 C -0.189 4.189 20 N -0.434 5.434 21 Si 0.909 3.091 22 H -0.195 1.195 23 H -0.191 1.191 24 H -0.186 1.186 25 C -0.267 4.267 26 C -0.094 4.094 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.047 0.953 30 H 0.251 0.749 31 H 0.112 0.888 32 H 0.137 0.863 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.249 0.751 36 H 0.155 0.845 37 H 0.127 0.873 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 6.904 -7.870 23.955 26.142 hybrid contribution -1.279 -1.621 -0.328 2.091 sum 5.625 -9.491 23.626 26.075 Atomic orbital electron populations 1.21756 0.95401 1.01760 1.01149 1.21630 0.94835 0.95680 0.83569 0.90663 1.22645 0.87451 0.91557 0.93595 0.87627 1.86550 1.42434 1.57792 1.51118 1.23501 0.97919 1.02903 0.94373 1.22595 0.95108 0.87945 0.97468 1.47705 1.56074 1.30702 1.02566 1.15696 0.79892 0.83017 0.80412 1.90890 1.45706 1.30487 1.83089 1.41881 1.59013 1.26573 1.03019 1.17005 1.15155 0.92310 0.82807 1.20397 1.00190 0.98336 0.91630 1.20732 1.12343 0.94690 0.96085 1.17855 0.89880 0.92612 0.92827 1.20442 1.39909 1.02487 0.95935 0.92472 1.28209 1.04109 0.93041 0.93588 1.70630 1.12903 1.36203 1.23636 0.83455 0.72520 0.77141 0.76025 1.19491 1.19080 1.18594 1.20682 1.15260 0.97881 0.92897 1.20438 0.98668 0.94891 0.95384 0.92704 0.90404 0.95280 0.74949 0.88771 0.86261 0.90839 0.89784 0.75091 0.84526 0.87297 0.90487 0.89032 0.88007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 8.58 71.98 0.62 -3.15 16 2 C 0.15 3.31 3.44 45.34 0.16 3.47 16 3 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.11 1.26 4.18 31.78 0.13 1.39 16 5 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 6 O -0.57 -6.69 11.76 -148.98 -1.75 -8.44 16 7 C -0.15 -1.26 6.82 32.06 0.22 -1.04 16 8 C 0.09 1.42 6.54 86.93 0.57 1.98 16 9 N -0.63 -16.44 3.06 -805.46 -2.47 -18.91 16 10 C 0.71 25.80 8.01 179.05 1.43 27.24 16 11 O -0.62 -28.87 12.99 -3.98 -0.05 -28.92 16 12 N -0.66 -22.50 5.26 -316.78 -1.67 -24.16 16 13 C 0.02 0.91 6.30 38.57 0.24 1.15 16 14 C -0.09 -3.51 9.89 22.13 0.22 -3.29 16 15 C -0.22 -10.42 9.74 22.48 0.22 -10.21 16 16 C 0.07 3.85 5.17 -21.27 -0.11 3.74 16 17 C -0.56 -31.99 9.26 23.39 0.22 -31.78 16 18 H 0.06 3.39 8.06 -2.91 -0.02 3.36 16 19 C 0.03 1.64 5.08 85.23 0.43 2.07 16 20 N -0.81 -45.39 13.66 21.82 0.30 -45.09 16 21 Si 1.09 50.16 25.92 68.60 1.78 51.93 16 22 H -0.27 -12.18 6.55 99.48 0.65 -11.53 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 25 C -0.25 -13.19 7.66 22.48 0.17 -13.02 16 26 C -0.07 -3.64 8.57 22.13 0.19 -3.45 16 27 H 0.05 1.51 7.44 -2.38 -0.02 1.49 16 28 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.03 0.99 6.88 -2.38 -0.02 0.97 16 30 H 0.40 0.63 9.12 -74.06 -0.68 -0.05 16 31 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.12 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.13 7.37 -2.39 -0.02 1.11 16 35 H 0.41 10.50 7.35 -92.71 -0.68 9.82 16 36 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 37 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 38 H 0.28 15.69 8.73 -92.71 -0.81 14.88 16 39 H 0.09 4.98 5.16 -2.91 -0.02 4.96 16 40 H 0.10 5.14 6.34 -2.91 -0.02 5.12 16 Total: -1.00 -74.95 324.06 0.48 -74.48 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: -0.37 Total: 24.02 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 4.71 Total: -24.90 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -3.84 Total: -88.16 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -1.80 Total: -37.37 kcal Atomic # 14 Polarization: 50.16 SS G_CDS: 1.78 Total: 51.93 kcal Total: -74.95 0.48 -74.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672506258.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.907 kcal (2) G-P(sol) polarization free energy of solvation -74.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds