Wall clock time and date at job start Tue Mar 31 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00357 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21584 * 120.00541 * 0.02562 * 6 5 4 8 8 C 1.47540 * 119.99722 * 179.97438 * 6 5 4 9 9 C 1.39530 * 120.05179 * 359.73279 * 8 6 5 10 10 C 1.37790 * 120.18599 * 179.79468 * 9 8 6 11 11 C 1.38641 * 119.97045 * 0.44206 * 10 9 8 12 12 C 1.37647 * 120.32422 * 359.63585 * 11 10 9 13 13 C 1.38884 * 120.87702 * 0.31806 * 12 11 10 14 14 O 1.35856 * 111.31747 * 179.30064 * 13 12 11 15 15 C 1.43775 * 109.29073 * 18.84823 * 14 13 12 16 16 C 1.51675 * 132.13497 * 180.56938 * 12 11 10 17 17 N 1.46500 * 109.46849 * 240.00422 * 2 1 3 18 18 C 1.36939 * 120.00440 * 84.99968 * 17 2 1 19 19 H 1.08007 * 119.99440 * 359.97438 * 18 17 2 20 20 C 1.38814 * 120.00407 * 180.02562 * 18 17 2 21 21 N 1.31615 * 119.99666 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46829 * 89.99758 * 22 20 18 24 24 H 1.48501 * 109.46981 * 209.99745 * 22 20 18 25 25 H 1.48496 * 109.47028 * 329.99992 * 22 20 18 26 26 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46970 * 299.99692 * 1 2 3 28 28 H 1.08996 * 109.47654 * 59.99454 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 32 32 H 1.07998 * 119.90391 * 0.07223 * 9 8 6 33 33 H 1.08003 * 120.00720 * 180.12942 * 10 9 8 34 34 H 1.08006 * 119.83403 * 179.65526 * 11 10 9 35 35 H 1.09000 * 110.74875 * 90.67113 * 15 14 13 36 36 H 1.09004 * 110.74614 * 213.83919 * 15 14 13 37 37 H 1.09004 * 110.95106 * 46.13507 * 16 12 11 38 38 H 1.09000 * 110.97664 * 282.44591 * 16 12 11 39 39 H 0.96998 * 120.00051 * 264.99732 * 17 2 1 40 40 H 0.97000 * 119.99759 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4284 2.1909 7 8 3.5685 -1.8846 3.1421 8 6 5.6434 -1.5348 2.1315 9 6 6.3378 -1.0176 1.0373 10 6 7.7113 -1.1117 0.9810 11 6 8.4059 -1.7300 2.0093 12 6 7.7308 -2.2450 3.0927 13 6 6.3469 -2.1627 3.1750 14 8 5.8843 -2.7437 4.3126 15 6 6.9610 -2.8596 5.2584 16 6 8.2082 -2.9508 4.3475 17 7 2.0182 -0.6905 -1.1962 18 6 2.1490 -0.0074 -2.3758 19 1 1.8917 1.0405 -2.4243 20 6 2.6111 -0.6618 -3.5094 21 7 2.9241 -1.9389 -3.4504 22 14 2.7888 0.2700 -5.1187 23 1 4.1511 0.8550 -5.2040 24 1 2.5779 -0.6615 -6.2559 25 1 1.7788 1.3571 -5.1753 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6054 -1.7199 1.2951 30 1 1.7517 -0.1584 2.1369 31 1 3.9824 -0.4622 0.4317 32 1 5.7975 -0.5382 0.2345 33 1 8.2460 -0.7085 0.1337 34 1 9.4821 -1.8074 1.9602 35 1 7.0119 -1.9768 5.8957 36 1 6.8514 -3.7623 5.8595 37 1 9.0543 -2.4265 4.7916 38 1 8.4626 -3.9898 4.1379 39 1 2.2489 -1.6317 -1.1528 40 1 3.2474 -2.3961 -4.2424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690624935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:39 Heat of formation + Delta-G solvation = -30.166096 kcal Electronic energy + Delta-G solvation = -22803.268637 eV Core-core repulsion = 19390.690144 eV Total energy + Delta-G solvation = -3412.578493 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.24288 -39.14114 -37.26158 -36.21678 -33.52020 -32.80423 -31.79239 -30.27706 -29.34588 -28.65034 -25.94978 -23.99347 -23.60680 -22.60669 -21.97982 -20.15082 -19.82294 -17.74335 -17.35161 -16.95844 -16.56340 -16.17427 -15.37510 -15.12404 -14.92954 -14.43497 -14.05048 -13.74762 -13.50855 -13.30724 -13.18883 -12.85209 -12.62341 -12.16123 -12.09022 -11.93803 -11.86636 -11.81129 -11.36168 -11.29760 -10.96062 -10.88075 -10.75404 -10.33784 -10.01052 -9.71651 -9.48393 -8.99624 -8.98478 -8.52913 -8.18195 -7.04301 -5.81481 -3.11947 0.89008 1.27398 3.06366 3.21476 3.39144 3.45598 3.47058 3.60655 3.92029 4.22346 4.41369 4.54158 4.71679 4.81988 5.00750 5.07636 5.22935 5.30102 5.39458 5.48493 5.50663 5.51511 5.55149 5.60803 5.84006 5.97711 6.11653 6.15922 6.20999 6.21322 6.35651 6.39282 6.52179 6.58794 6.77467 6.89382 7.07018 7.10770 7.65662 8.02131 8.35829 8.66858 9.47666 10.03043 10.39001 11.40316 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.004189 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.112877 B = 6683.003662 C = 7883.216144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.053 0.947 4 C 0.116 3.884 5 N -0.709 5.709 6 C 0.553 3.447 7 O -0.540 6.540 8 C -0.152 4.152 9 C -0.046 4.046 10 C -0.155 4.155 11 C -0.048 4.048 12 C -0.194 4.194 13 C 0.166 3.834 14 O -0.276 6.276 15 C 0.045 3.955 16 C -0.107 4.107 17 N -0.724 5.724 18 C -0.243 4.243 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 H 0.049 0.951 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.408 0.592 32 H 0.142 0.858 33 H 0.135 0.865 34 H 0.127 0.873 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.385 0.615 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.582 1.079 14.338 18.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.071 0.929 4 C -0.008 4.008 5 N -0.362 5.362 6 C 0.340 3.660 7 O -0.419 6.419 8 C -0.156 4.156 9 C -0.064 4.064 10 C -0.174 4.174 11 C -0.066 4.066 12 C -0.195 4.195 13 C 0.118 3.882 14 O -0.188 6.188 15 C -0.030 4.030 16 C -0.144 4.144 17 N -0.367 5.367 18 C -0.374 4.374 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.246 0.754 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.145 0.855 35 H 0.095 0.905 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.220 0.780 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.895 0.794 14.937 18.505 hybrid contribution 0.528 0.246 -1.414 1.529 sum 11.423 1.040 13.523 17.732 Atomic orbital electron populations 1.22354 0.98274 1.01298 1.00344 1.20516 0.92710 0.95721 0.86166 0.92862 1.21688 0.79327 1.01182 0.98619 1.45885 1.08234 1.58889 1.23181 1.18037 0.86596 0.78544 0.82832 1.90777 1.69619 1.48054 1.33419 1.19351 0.93731 1.06166 0.96311 1.21279 0.94651 0.95134 0.95357 1.20996 0.93941 1.02885 0.99531 1.20438 0.99837 0.94751 0.91590 1.20750 0.93499 1.06001 0.99221 1.19451 0.91289 0.90063 0.87422 1.87017 1.35193 1.73797 1.22823 1.23912 0.84138 1.03300 0.91683 1.21781 0.98862 1.01401 0.92338 1.42490 1.78084 1.10867 1.05247 1.19231 1.36979 0.93884 0.87355 0.91112 1.24738 1.02054 0.95874 0.97953 1.69669 1.50482 1.08587 1.28955 0.86226 0.77752 0.78607 0.83783 1.21715 1.21838 1.20802 0.93187 0.94180 0.92340 0.91777 0.91798 0.75441 0.84050 0.84706 0.85525 0.90490 0.87518 0.89071 0.89123 0.78042 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.15 0.35 -2.51 16 2 C 0.16 3.04 3.05 -67.94 -0.21 2.83 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 C 0.12 2.09 5.23 -4.04 -0.02 2.07 16 5 N -0.71 -12.79 5.34 -61.35 -0.33 -13.12 16 6 C 0.55 10.53 7.76 -12.47 -0.10 10.43 16 7 O -0.54 -11.86 15.86 -10.30 -0.16 -12.02 16 8 C -0.15 -2.52 5.89 -104.72 -0.62 -3.13 16 9 C -0.05 -0.65 9.51 -39.26 -0.37 -1.02 16 10 C -0.16 -1.83 10.05 -39.60 -0.40 -2.23 16 11 C -0.05 -0.52 10.02 -39.65 -0.40 -0.92 16 12 C -0.19 -2.36 6.27 -104.12 -0.65 -3.01 16 13 C 0.17 2.59 6.73 -38.44 -0.26 2.33 16 14 O -0.28 -4.36 10.12 -34.88 -0.35 -4.72 16 15 C 0.04 0.44 8.01 38.06 0.30 0.75 16 16 C -0.11 -0.93 7.12 -26.50 -0.19 -1.12 16 17 N -0.72 -17.11 4.56 -53.43 -0.24 -17.35 16 18 C -0.24 -6.37 9.93 -15.06 -0.15 -6.52 16 19 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 21 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 22 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.41 7.22 6.15 -40.82 -0.25 6.97 16 32 H 0.14 1.95 6.37 -52.49 -0.33 1.62 16 33 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 34 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.39 9.94 7.80 -40.82 -0.32 9.62 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -32.70 338.32 -8.61 -41.31 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -5.52 Total: 12.98 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -2.80 Total: -2.41 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.15 Total: -56.78 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.52 Total: -16.74 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.70 -8.61 -41.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690624935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.141 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds