Wall clock time and date at job start Tue Mar 31 2020 06:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47017 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00357 * 2 1 3 5 5 N 1.46505 * 109.47212 * 174.99693 * 4 2 1 6 6 C 1.34771 * 119.99622 * 179.97438 * 5 4 2 7 7 O 1.21584 * 120.00541 * 0.02562 * 6 5 4 8 8 C 1.47540 * 119.99722 * 179.97438 * 6 5 4 9 9 C 1.39530 * 120.05179 * 359.73279 * 8 6 5 10 10 C 1.37790 * 120.18599 * 179.79468 * 9 8 6 11 11 C 1.38641 * 119.97045 * 0.44206 * 10 9 8 12 12 C 1.37647 * 120.32422 * 359.63585 * 11 10 9 13 13 C 1.38884 * 120.87702 * 0.31806 * 12 11 10 14 14 O 1.35856 * 111.31747 * 179.30064 * 13 12 11 15 15 C 1.43775 * 109.29073 * 18.84823 * 14 13 12 16 16 C 1.51675 * 132.13497 * 180.56938 * 12 11 10 17 17 N 1.46500 * 109.46849 * 240.00422 * 2 1 3 18 18 C 1.36939 * 120.00440 * 84.99968 * 17 2 1 19 19 H 1.08007 * 119.99440 * 359.97438 * 18 17 2 20 20 C 1.38814 * 120.00407 * 180.02562 * 18 17 2 21 21 N 1.31615 * 119.99666 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99989 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.46829 * 89.99758 * 22 20 18 24 24 H 1.48501 * 109.46981 * 209.99745 * 22 20 18 25 25 H 1.48496 * 109.47028 * 329.99992 * 22 20 18 26 26 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 27 27 H 1.09008 * 109.46970 * 299.99692 * 1 2 3 28 28 H 1.08996 * 109.47654 * 59.99454 * 1 2 3 29 29 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 30 30 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 31 31 H 0.96996 * 119.99606 * 0.02562 * 5 4 2 32 32 H 1.07998 * 119.90391 * 0.07223 * 9 8 6 33 33 H 1.08003 * 120.00720 * 180.12942 * 10 9 8 34 34 H 1.08006 * 119.83403 * 179.65526 * 11 10 9 35 35 H 1.09000 * 110.74875 * 90.67113 * 15 14 13 36 36 H 1.09004 * 110.74614 * 213.83919 * 15 14 13 37 37 H 1.09004 * 110.95106 * 46.13507 * 16 12 11 38 38 H 1.09000 * 110.97664 * 282.44591 * 16 12 11 39 39 H 0.96998 * 120.00051 * 264.99732 * 17 2 1 40 40 H 0.97000 * 119.99759 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1904 6 6 4.1731 -1.4284 2.1909 7 8 3.5685 -1.8846 3.1421 8 6 5.6434 -1.5348 2.1315 9 6 6.3378 -1.0176 1.0373 10 6 7.7113 -1.1117 0.9810 11 6 8.4059 -1.7300 2.0093 12 6 7.7308 -2.2450 3.0927 13 6 6.3469 -2.1627 3.1750 14 8 5.8843 -2.7437 4.3126 15 6 6.9610 -2.8596 5.2584 16 6 8.2082 -2.9508 4.3475 17 7 2.0182 -0.6905 -1.1962 18 6 2.1490 -0.0074 -2.3758 19 1 1.8917 1.0405 -2.4243 20 6 2.6111 -0.6618 -3.5094 21 7 2.9241 -1.9389 -3.4504 22 14 2.7888 0.2700 -5.1187 23 1 4.1511 0.8550 -5.2040 24 1 2.5779 -0.6615 -6.2559 25 1 1.7788 1.3571 -5.1753 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6054 -1.7199 1.2951 30 1 1.7517 -0.1584 2.1369 31 1 3.9824 -0.4622 0.4317 32 1 5.7975 -0.5382 0.2345 33 1 8.2460 -0.7085 0.1337 34 1 9.4821 -1.8074 1.9602 35 1 7.0119 -1.9768 5.8957 36 1 6.8514 -3.7623 5.8595 37 1 9.0543 -2.4265 4.7916 38 1 8.4626 -3.9898 4.1379 39 1 2.2489 -1.6317 -1.1528 40 1 3.2474 -2.3961 -4.2424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690624935.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:38 Heat of formation + Delta-G solvation = -51.636349 kcal Electronic energy + Delta-G solvation = -22804.199657 eV Core-core repulsion = 19390.690144 eV Total energy + Delta-G solvation = -3413.509513 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.23561 -40.54337 -38.31465 -37.86554 -35.21533 -33.96571 -33.36541 -31.34993 -30.59034 -30.11603 -27.35998 -25.71185 -24.83868 -23.61987 -22.97405 -21.73756 -21.14149 -19.40654 -18.64337 -18.19603 -17.64660 -17.14049 -16.93133 -16.61908 -16.11610 -15.93371 -15.47036 -15.36988 -14.88970 -14.48053 -14.14684 -13.94403 -13.90399 -13.68467 -13.53387 -13.28754 -13.06818 -12.81403 -12.75394 -12.68256 -12.50118 -12.21628 -12.16415 -11.80863 -11.71731 -11.65484 -11.01267 -10.88959 -10.18257 -9.85893 -9.18568 -9.02401 -7.89774 -5.19778 -0.18406 0.28191 1.51332 1.52529 1.60469 1.83658 2.22546 2.29781 2.59154 2.77059 3.43124 3.43987 3.58689 3.76849 3.88298 3.95202 3.98932 4.15426 4.20803 4.32085 4.37033 4.44283 4.56301 4.62904 4.71758 4.81673 4.83866 4.88070 4.97600 5.05684 5.15172 5.24247 5.29220 5.38130 5.40527 5.57394 5.58493 5.62559 6.13653 6.29950 6.55954 7.20702 7.37322 8.08513 8.34239 9.32947 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018367 B = 0.004189 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.112877 B = 6683.003662 C = 7883.216144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.160 3.840 3 H 0.062 0.938 4 C 0.123 3.877 5 N -0.707 5.707 6 C 0.548 3.452 7 O -0.579 6.579 8 C -0.187 4.187 9 C -0.058 4.058 10 C -0.152 4.152 11 C -0.036 4.036 12 C -0.192 4.192 13 C 0.138 3.862 14 O -0.316 6.316 15 C 0.033 3.967 16 C -0.097 4.097 17 N -0.733 5.733 18 C -0.237 4.237 19 H 0.079 0.921 20 C -0.069 4.069 21 N -0.967 5.967 22 Si 0.968 3.032 23 H -0.284 1.284 24 H -0.303 1.303 25 H -0.272 1.272 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.080 0.920 31 H 0.409 0.591 32 H 0.135 0.865 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.124 0.876 38 H 0.105 0.895 39 H 0.372 0.628 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.755 2.105 14.863 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.052 3.948 3 H 0.080 0.920 4 C -0.001 4.001 5 N -0.359 5.359 6 C 0.337 3.663 7 O -0.461 6.461 8 C -0.190 4.190 9 C -0.077 4.077 10 C -0.170 4.170 11 C -0.054 4.054 12 C -0.193 4.193 13 C 0.090 3.910 14 O -0.229 6.229 15 C -0.041 4.041 16 C -0.133 4.133 17 N -0.374 5.374 18 C -0.368 4.368 19 H 0.097 0.903 20 C -0.261 4.261 21 N -0.618 5.618 22 Si 0.798 3.202 23 H -0.211 1.211 24 H -0.230 1.230 25 H -0.197 1.197 26 H 0.060 0.940 27 H 0.092 0.908 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.247 0.753 32 H 0.153 0.847 33 H 0.180 0.820 34 H 0.187 0.813 35 H 0.105 0.895 36 H 0.146 0.854 37 H 0.142 0.858 38 H 0.123 0.877 39 H 0.204 0.796 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 13.057 1.873 15.483 20.340 hybrid contribution -0.121 -0.060 -1.464 1.470 sum 12.937 1.813 14.019 19.162 Atomic orbital electron populations 1.22229 0.96613 1.01155 1.01466 1.20675 0.93710 0.95612 0.84826 0.92010 1.21605 0.79447 1.00392 0.98672 1.45876 1.08197 1.58698 1.23081 1.18544 0.87962 0.77612 0.82148 1.90730 1.70714 1.49861 1.34834 1.19359 0.92252 1.09058 0.98368 1.21313 0.95984 0.95694 0.94687 1.21371 0.92855 1.02146 1.00635 1.20924 1.01813 0.92510 0.90133 1.21243 0.92028 1.05334 1.00657 1.19801 0.92977 0.90681 0.87507 1.86957 1.38225 1.73947 1.23817 1.24296 0.83484 1.04928 0.91342 1.21877 0.99020 1.02203 0.90246 1.42618 1.78383 1.10280 1.06077 1.19590 1.34988 0.94217 0.88032 0.90298 1.25460 1.02950 0.96632 1.01080 1.69831 1.52451 1.10189 1.29290 0.85219 0.77952 0.77327 0.79690 1.21140 1.22964 1.19731 0.93999 0.90805 0.93384 0.93343 0.90189 0.75297 0.84701 0.82046 0.81318 0.89461 0.85399 0.85757 0.87725 0.79641 0.94205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.30 9.49 71.98 0.68 -4.61 16 2 C 0.16 6.09 3.05 44.99 0.14 6.22 16 3 H 0.06 2.27 8.08 -2.39 -0.02 2.25 16 4 C 0.12 4.51 5.23 86.38 0.45 4.97 16 5 N -0.71 -26.49 5.34 -466.27 -2.49 -28.97 16 6 C 0.55 21.94 7.76 86.70 0.67 22.62 16 7 O -0.58 -26.80 15.86 10.92 0.17 -26.63 16 8 C -0.19 -6.41 5.89 -19.93 -0.12 -6.53 16 9 C -0.06 -1.66 9.51 22.48 0.21 -1.45 16 10 C -0.15 -3.27 10.05 22.26 0.22 -3.05 16 11 C -0.04 -0.66 10.02 22.23 0.22 -0.44 16 12 C -0.19 -4.25 6.27 -19.54 -0.12 -4.38 16 13 C 0.14 4.35 6.73 23.01 0.15 4.50 16 14 O -0.32 -10.18 10.12 -77.03 -0.78 -10.96 16 15 C 0.03 0.61 8.01 72.56 0.58 1.19 16 16 C -0.10 -1.38 7.12 30.74 0.22 -1.16 16 17 N -0.73 -35.01 4.56 -322.95 -1.47 -36.48 16 18 C -0.24 -12.35 9.93 84.03 0.83 -11.51 16 19 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 20 C -0.07 -3.77 5.50 84.86 0.47 -3.30 16 21 N -0.97 -57.41 13.06 21.65 0.28 -57.13 16 22 Si 0.97 44.41 29.55 68.60 2.03 46.44 16 23 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.41 15.06 6.15 -92.71 -0.57 14.49 16 32 H 0.14 3.88 6.37 -2.91 -0.02 3.86 16 33 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 34 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 35 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.13 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.37 19.75 7.80 -92.71 -0.72 19.03 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 Total: -1.00 -73.18 338.32 2.14 -71.04 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.23 Total: 39.61 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: 4.62 Total: 3.08 kcal Atomic # 7 Polarization: -118.91 SS G_CDS: -3.68 Total: -122.58 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -0.61 Total: -37.59 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -73.18 2.14 -71.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690624935.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.403 kcal (2) G-P(sol) polarization free energy of solvation -73.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds