Wall clock time and date at job start Tue Mar 31 2020 06:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47663 * 2 1 4 4 C 1.52995 * 109.47212 * 239.99485 * 2 1 3 5 5 N 1.46497 * 109.47258 * 185.00606 * 4 2 1 6 6 C 1.34774 * 120.00319 * 180.02562 * 5 4 2 7 7 O 1.21589 * 120.00182 * 359.97438 * 6 5 4 8 8 C 1.47614 * 120.00263 * 179.97438 * 6 5 4 9 9 C 1.39745 * 120.26215 * 0.02562 * 8 6 5 10 10 C 1.37475 * 120.19832 * 180.22271 * 9 8 6 11 11 C 1.39585 * 120.42570 * 0.29767 * 10 9 8 12 12 C 1.39186 * 119.10615 * 359.07521 * 11 10 9 13 13 C 1.37301 * 120.93020 * 1.06842 * 12 11 10 14 14 C 1.51681 * 107.00304 * 181.08109 * 12 11 10 15 15 C 1.54700 * 101.90890 * 15.50697 * 14 12 11 16 16 O 1.35999 * 129.72493 * 179.31953 * 11 10 9 17 17 N 1.46506 * 109.46843 * 119.99446 * 2 1 3 18 18 C 1.36933 * 120.00351 * 274.99843 * 17 2 1 19 19 H 1.07999 * 119.99842 * 0.02562 * 18 17 2 20 20 C 1.38809 * 119.99997 * 179.97438 * 18 17 2 21 21 N 1.31614 * 120.00264 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99559 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47401 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47072 * 120.00400 * 22 20 18 25 25 H 1.48500 * 109.46904 * 239.99845 * 22 20 18 26 26 H 1.09007 * 109.46897 * 60.00322 * 1 2 3 27 27 H 1.09000 * 109.47663 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47180 * 300.00976 * 1 2 3 29 29 H 1.08993 * 109.47281 * 65.00254 * 4 2 1 30 30 H 1.09002 * 109.47224 * 305.00377 * 4 2 1 31 31 H 0.97007 * 120.00034 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.90344 * 0.20512 * 9 8 6 33 33 H 1.08002 * 119.78342 * 180.02562 * 10 9 8 34 34 H 1.08007 * 120.07232 * 179.40908 * 13 12 11 35 35 H 1.09003 * 110.94288 * 133.65808 * 14 12 11 36 36 H 1.08997 * 110.94283 * 257.31822 * 14 12 11 37 37 H 1.09007 * 110.74477 * 93.01666 * 15 14 12 38 38 H 1.08999 * 110.74773 * 216.16884 * 15 14 12 39 39 H 0.97006 * 119.99657 * 94.99414 * 17 2 1 40 40 H 0.97004 * 120.00206 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5000 -0.8266 -1.1904 6 6 4.1730 -1.4286 -2.1909 7 8 3.5685 -1.8847 -3.1421 8 6 5.6442 -1.5341 -2.1319 9 6 6.3446 -1.0122 -1.0411 10 6 7.7151 -1.1072 -0.9897 11 6 8.4207 -1.7190 -2.0272 12 6 7.7165 -2.2486 -3.1047 13 6 6.3480 -2.1566 -3.1672 14 6 8.7378 -2.8617 -4.0437 15 6 9.9920 -2.9438 -3.1417 16 8 9.7597 -1.9036 -2.1771 17 7 2.0182 -0.6905 1.1963 18 6 2.1490 -0.0074 2.3758 19 1 1.8919 1.0404 2.4243 20 6 2.6112 -0.6618 3.5094 21 7 2.9241 -1.9389 3.4504 22 14 2.7889 0.2701 5.1186 23 1 2.3741 1.6822 4.9213 24 1 1.9278 -0.3585 6.1522 25 1 4.2056 0.2270 5.5616 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.7517 -0.1585 -2.1369 30 1 1.6053 -1.7199 -1.2950 31 1 3.9824 -0.4623 -0.4317 32 1 5.8077 -0.5326 -0.2360 33 1 8.2496 -0.7019 -0.1433 34 1 5.8164 -2.5641 -4.0145 35 1 8.4241 -3.8546 -4.3660 36 1 8.9162 -2.2139 -4.9019 37 1 10.0534 -3.9164 -2.6534 38 1 10.8957 -2.7450 -3.7179 39 1 2.2488 -1.6318 1.1528 40 1 3.2474 -2.3961 4.2424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690625668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:37 Heat of formation + Delta-G solvation = -33.840426 kcal Electronic energy + Delta-G solvation = -22470.226764 eV Core-core repulsion = 19057.488940 eV Total energy + Delta-G solvation = -3412.737824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.26848 -39.49407 -37.12793 -36.21792 -33.64769 -32.86297 -31.89772 -30.36261 -29.40199 -28.68672 -26.05550 -23.93504 -23.44768 -22.95716 -21.93301 -20.21431 -19.91880 -17.73973 -17.52420 -17.18276 -16.59079 -16.29036 -15.49016 -15.21532 -14.64745 -14.29385 -14.14176 -13.80759 -13.62309 -13.37931 -13.20014 -12.96421 -12.72627 -12.50179 -12.23791 -12.10532 -12.00440 -11.93107 -11.38548 -11.00371 -10.91092 -10.87915 -10.76722 -10.35304 -10.01807 -9.74372 -9.66857 -9.02944 -9.01581 -8.68706 -8.22536 -7.06756 -5.83723 -3.14313 0.85537 1.24794 2.89840 3.11535 3.38295 3.44893 3.46867 3.53473 3.88770 4.19447 4.38432 4.52629 4.68423 4.74407 4.97664 5.08654 5.14839 5.20219 5.41835 5.45127 5.46960 5.49311 5.54267 5.57422 5.89865 5.93508 6.06363 6.12986 6.17463 6.21363 6.28389 6.35324 6.40459 6.55234 6.73796 6.82915 6.98420 7.03694 7.64475 7.93551 8.33492 8.55492 9.45630 10.00354 10.36172 11.38086 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.004016 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.861473 B = 6970.143857 C = 8410.657054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.159 3.841 3 H 0.054 0.946 4 C 0.115 3.885 5 N -0.707 5.707 6 C 0.559 3.441 7 O -0.555 6.555 8 C -0.158 4.158 9 C -0.042 4.042 10 C -0.143 4.143 11 C 0.126 3.874 12 C -0.190 4.190 13 C -0.011 4.011 14 C -0.108 4.108 15 C 0.051 3.949 16 O -0.303 6.303 17 N -0.725 5.725 18 C -0.244 4.244 19 H 0.072 0.928 20 C -0.009 4.009 21 N -0.929 5.929 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.410 0.590 32 H 0.143 0.857 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.107 0.893 39 H 0.385 0.615 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.102 0.017 -13.849 17.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.048 3.952 3 H 0.072 0.928 4 C -0.009 4.009 5 N -0.358 5.358 6 C 0.346 3.654 7 O -0.435 6.435 8 C -0.161 4.161 9 C -0.061 4.061 10 C -0.161 4.161 11 C 0.080 3.920 12 C -0.191 4.191 13 C -0.030 4.030 14 C -0.145 4.145 15 C -0.024 4.024 16 O -0.217 6.217 17 N -0.367 5.367 18 C -0.375 4.375 19 H 0.090 0.910 20 C -0.206 4.206 21 N -0.577 5.577 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.247 0.753 32 H 0.161 0.839 33 H 0.154 0.846 34 H 0.155 0.845 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.219 0.781 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.855 -0.061 -14.251 17.915 hybrid contribution 0.296 0.137 1.320 1.360 sum 11.151 0.077 -12.931 17.075 Atomic orbital electron populations 1.22357 0.98245 1.01303 1.00388 1.20521 0.92742 0.95753 0.86137 0.92818 1.21715 0.79213 1.01262 0.98736 1.45898 1.08354 1.58420 1.23144 1.18042 0.86635 0.78110 0.82586 1.90730 1.69915 1.49040 1.33854 1.19834 0.93480 1.05536 0.97297 1.21205 0.93104 0.95134 0.96636 1.20206 0.93244 1.04884 0.97812 1.19840 0.82985 0.95275 0.93882 1.20644 0.94491 1.06849 0.97151 1.20297 0.91289 0.94007 0.97432 1.21774 0.92427 1.02353 0.97900 1.23859 0.98929 0.90763 0.88863 1.86788 1.20099 1.53896 1.60911 1.42501 1.78094 1.10862 1.05267 1.19267 1.36946 0.93921 0.87319 0.91042 1.24738 1.01996 0.95884 0.97979 1.69673 1.50513 1.08612 1.28864 0.86161 0.77310 0.78822 0.84122 1.20557 1.21905 1.21854 0.94169 0.93181 0.92305 0.91684 0.91681 0.75282 0.83940 0.84646 0.84526 0.88872 0.89110 0.90332 0.87534 0.78053 0.93479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.16 0.35 -2.44 16 2 C 0.16 2.95 3.05 -67.93 -0.21 2.74 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 C 0.12 1.97 5.23 -4.05 -0.02 1.95 16 5 N -0.71 -12.06 5.34 -61.33 -0.33 -12.38 16 6 C 0.56 9.76 7.77 -12.44 -0.10 9.66 16 7 O -0.56 -11.05 16.36 5.29 0.09 -10.97 16 8 C -0.16 -2.41 5.88 -104.92 -0.62 -3.03 16 9 C -0.04 -0.59 9.52 -39.30 -0.37 -0.96 16 10 C -0.14 -1.88 10.05 -39.36 -0.40 -2.27 16 11 C 0.13 1.64 7.05 -38.73 -0.27 1.36 16 12 C -0.19 -2.32 6.26 -104.13 -0.65 -2.98 16 13 C -0.01 -0.16 9.58 -39.34 -0.38 -0.53 16 14 C -0.11 -0.90 7.12 -26.51 -0.19 -1.09 16 15 C 0.05 0.40 8.01 38.05 0.30 0.71 16 16 O -0.30 -3.62 11.09 -19.74 -0.22 -3.83 16 17 N -0.72 -16.80 4.56 -53.43 -0.24 -17.04 16 18 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -26.82 13.06 55.49 0.72 -26.09 16 22 Si 0.90 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.41 6.94 6.17 -40.82 -0.25 6.69 16 32 H 0.14 1.93 6.40 -52.49 -0.34 1.59 16 33 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 34 H 0.14 1.81 7.66 -52.48 -0.40 1.41 16 35 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.39 9.73 7.80 -40.82 -0.32 9.42 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 339.29 15.07 5.11 5.11 Total: -1.00 -31.14 339.29 -8.18 -39.32 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.50 Total: 13.10 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -2.79 Total: -3.67 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: 0.15 Total: -55.52 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.13 Total: -14.80 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.14 -8.18 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690625668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.480 kcal (2) G-P(sol) polarization free energy of solvation -31.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds