Wall clock time and date at job start Tue Mar 31 2020 06:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47663 * 2 1 4 4 C 1.52995 * 109.47212 * 239.99485 * 2 1 3 5 5 N 1.46497 * 109.47258 * 185.00606 * 4 2 1 6 6 C 1.34774 * 120.00319 * 180.02562 * 5 4 2 7 7 O 1.21589 * 120.00182 * 359.97438 * 6 5 4 8 8 C 1.47614 * 120.00263 * 179.97438 * 6 5 4 9 9 C 1.39745 * 120.26215 * 0.02562 * 8 6 5 10 10 C 1.37475 * 120.19832 * 180.22271 * 9 8 6 11 11 C 1.39585 * 120.42570 * 0.29767 * 10 9 8 12 12 C 1.39186 * 119.10615 * 359.07521 * 11 10 9 13 13 C 1.37301 * 120.93020 * 1.06842 * 12 11 10 14 14 C 1.51681 * 107.00304 * 181.08109 * 12 11 10 15 15 C 1.54700 * 101.90890 * 15.50697 * 14 12 11 16 16 O 1.35999 * 129.72493 * 179.31953 * 11 10 9 17 17 N 1.46506 * 109.46843 * 119.99446 * 2 1 3 18 18 C 1.36933 * 120.00351 * 274.99843 * 17 2 1 19 19 H 1.07999 * 119.99842 * 0.02562 * 18 17 2 20 20 C 1.38809 * 119.99997 * 179.97438 * 18 17 2 21 21 N 1.31614 * 120.00264 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99559 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47401 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47072 * 120.00400 * 22 20 18 25 25 H 1.48500 * 109.46904 * 239.99845 * 22 20 18 26 26 H 1.09007 * 109.46897 * 60.00322 * 1 2 3 27 27 H 1.09000 * 109.47663 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47180 * 300.00976 * 1 2 3 29 29 H 1.08993 * 109.47281 * 65.00254 * 4 2 1 30 30 H 1.09002 * 109.47224 * 305.00377 * 4 2 1 31 31 H 0.97007 * 120.00034 * 359.97438 * 5 4 2 32 32 H 1.08002 * 119.90344 * 0.20512 * 9 8 6 33 33 H 1.08002 * 119.78342 * 180.02562 * 10 9 8 34 34 H 1.08007 * 120.07232 * 179.40908 * 13 12 11 35 35 H 1.09003 * 110.94288 * 133.65808 * 14 12 11 36 36 H 1.08997 * 110.94283 * 257.31822 * 14 12 11 37 37 H 1.09007 * 110.74477 * 93.01666 * 15 14 12 38 38 H 1.08999 * 110.74773 * 216.16884 * 15 14 12 39 39 H 0.97006 * 119.99657 * 94.99414 * 17 2 1 40 40 H 0.97004 * 120.00206 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5000 -0.8266 -1.1904 6 6 4.1730 -1.4286 -2.1909 7 8 3.5685 -1.8847 -3.1421 8 6 5.6442 -1.5341 -2.1319 9 6 6.3446 -1.0122 -1.0411 10 6 7.7151 -1.1072 -0.9897 11 6 8.4207 -1.7190 -2.0272 12 6 7.7165 -2.2486 -3.1047 13 6 6.3480 -2.1566 -3.1672 14 6 8.7378 -2.8617 -4.0437 15 6 9.9920 -2.9438 -3.1417 16 8 9.7597 -1.9036 -2.1771 17 7 2.0182 -0.6905 1.1963 18 6 2.1490 -0.0074 2.3758 19 1 1.8919 1.0404 2.4243 20 6 2.6112 -0.6618 3.5094 21 7 2.9241 -1.9389 3.4504 22 14 2.7889 0.2701 5.1186 23 1 2.3741 1.6822 4.9213 24 1 1.9278 -0.3585 6.1522 25 1 4.2056 0.2270 5.5616 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5140 0.8899 29 1 1.7517 -0.1585 -2.1369 30 1 1.6053 -1.7199 -1.2950 31 1 3.9824 -0.4623 -0.4317 32 1 5.8077 -0.5326 -0.2360 33 1 8.2496 -0.7019 -0.1433 34 1 5.8164 -2.5641 -4.0145 35 1 8.4241 -3.8546 -4.3660 36 1 8.9162 -2.2139 -4.9019 37 1 10.0534 -3.9164 -2.6534 38 1 10.8957 -2.7450 -3.7179 39 1 2.2488 -1.6318 1.1528 40 1 3.2474 -2.3961 4.2424 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690625668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:36 Heat of formation + Delta-G solvation = -54.135846 kcal Electronic energy + Delta-G solvation = -22471.106839 eV Core-core repulsion = 19057.488940 eV Total energy + Delta-G solvation = -3413.617900 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.18960 -40.79858 -38.29072 -37.72544 -35.25852 -33.90451 -33.49033 -31.50412 -30.56147 -30.16287 -27.38459 -25.71922 -24.54064 -24.01943 -22.85496 -21.72937 -21.20403 -19.40450 -18.64705 -18.41892 -17.69460 -17.16258 -16.85752 -16.71457 -16.20498 -15.68891 -15.45925 -15.17543 -14.94090 -14.57837 -14.24643 -14.02560 -13.85132 -13.67434 -13.64681 -13.51514 -13.28336 -13.05964 -12.80557 -12.65601 -12.48730 -12.12212 -11.90234 -11.79003 -11.69966 -11.63766 -11.10185 -10.94681 -10.10152 -10.02921 -9.24022 -9.01545 -7.90147 -5.19408 -0.24660 0.22757 1.50276 1.52201 1.60649 1.74075 2.16428 2.27671 2.58921 2.74479 3.40127 3.44458 3.61144 3.71798 3.86005 3.90373 3.97061 4.12470 4.16509 4.19399 4.40066 4.45984 4.62532 4.64684 4.74273 4.80557 4.84567 4.87390 4.98169 5.07745 5.09099 5.20589 5.24426 5.26710 5.37004 5.43744 5.58542 5.60233 6.05503 6.30313 6.55303 7.17720 7.37947 8.09713 8.34602 9.32661 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016007 B = 0.004016 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.861473 B = 6970.143857 C = 8410.657054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.159 3.841 3 H 0.061 0.939 4 C 0.122 3.878 5 N -0.706 5.706 6 C 0.558 3.442 7 O -0.585 6.585 8 C -0.179 4.179 9 C -0.046 4.046 10 C -0.151 4.151 11 C 0.123 3.877 12 C -0.190 4.190 13 C -0.018 4.018 14 C -0.104 4.104 15 C 0.045 3.955 16 O -0.316 6.316 17 N -0.733 5.733 18 C -0.233 4.233 19 H 0.079 0.921 20 C -0.069 4.069 21 N -0.966 5.966 22 Si 0.965 3.035 23 H -0.266 1.266 24 H -0.301 1.301 25 H -0.295 1.295 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.410 0.590 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.138 0.862 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.373 0.627 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.236 0.725 -14.924 19.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.050 3.950 3 H 0.079 0.921 4 C -0.002 4.002 5 N -0.357 5.357 6 C 0.347 3.653 7 O -0.467 6.467 8 C -0.182 4.182 9 C -0.065 4.065 10 C -0.170 4.170 11 C 0.077 3.923 12 C -0.191 4.191 13 C -0.037 4.037 14 C -0.141 4.141 15 C -0.029 4.029 16 O -0.230 6.230 17 N -0.374 5.374 18 C -0.365 4.365 19 H 0.097 0.903 20 C -0.261 4.261 21 N -0.617 5.617 22 Si 0.795 3.205 23 H -0.190 1.190 24 H -0.229 1.229 25 H -0.223 1.223 26 H 0.093 0.907 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.102 0.898 30 H 0.071 0.929 31 H 0.247 0.753 32 H 0.159 0.841 33 H 0.166 0.834 34 H 0.156 0.844 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.108 0.892 38 H 0.156 0.844 39 H 0.205 0.795 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.977 0.692 -15.353 19.485 hybrid contribution 0.000 -0.075 1.548 1.550 sum 11.977 0.617 -13.806 18.287 Atomic orbital electron populations 1.22234 0.96649 1.01200 1.01444 1.20694 0.93696 0.95661 0.84924 0.92086 1.21632 0.79284 1.00641 0.98636 1.45901 1.08345 1.58343 1.23112 1.18377 0.87600 0.77322 0.81985 1.90699 1.70734 1.50404 1.34902 1.19750 0.92235 1.07524 0.98691 1.21178 0.93598 0.95352 0.96324 1.20369 0.92992 1.05027 0.98600 1.20021 0.83791 0.94662 0.93838 1.21021 0.94257 1.05977 0.97881 1.20367 0.92128 0.94068 0.97126 1.21924 0.91132 1.03398 0.97655 1.24230 0.99948 0.90358 0.88341 1.86780 1.19158 1.55073 1.61984 1.42633 1.78352 1.10329 1.06077 1.19607 1.34671 0.94191 0.88039 0.90333 1.25424 1.03084 0.96632 1.00979 1.69822 1.52580 1.10135 1.29155 0.85195 0.76595 0.78294 0.80376 1.19039 1.22858 1.22256 0.90746 0.93899 0.93554 0.89815 0.92920 0.75268 0.84140 0.83410 0.84422 0.87025 0.87476 0.89244 0.84377 0.79540 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.09 9.49 71.98 0.68 -4.40 16 2 C 0.16 5.75 3.05 44.99 0.14 5.89 16 3 H 0.06 2.15 8.08 -2.39 -0.02 2.13 16 4 C 0.12 4.14 5.23 86.38 0.45 4.59 16 5 N -0.71 -24.29 5.34 -466.21 -2.49 -26.78 16 6 C 0.56 19.79 7.77 86.72 0.67 20.47 16 7 O -0.58 -23.58 16.36 -4.00 -0.07 -23.64 16 8 C -0.18 -5.51 5.88 -20.06 -0.12 -5.63 16 9 C -0.05 -1.30 9.52 22.45 0.21 -1.08 16 10 C -0.15 -3.92 10.05 22.41 0.23 -3.69 16 11 C 0.12 3.05 7.05 22.82 0.16 3.21 16 12 C -0.19 -4.38 6.26 -19.54 -0.12 -4.50 16 13 C -0.02 -0.49 9.58 22.43 0.21 -0.27 16 14 C -0.10 -1.44 7.12 30.74 0.22 -1.23 16 15 C 0.04 0.57 8.01 72.56 0.58 1.15 16 16 O -0.32 -6.87 11.09 -93.54 -1.04 -7.90 16 17 N -0.73 -34.01 4.56 -322.95 -1.47 -35.48 16 18 C -0.23 -11.99 9.93 84.03 0.83 -11.15 16 19 H 0.08 3.87 7.83 -2.91 -0.02 3.85 16 20 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.97 -56.81 13.06 21.65 0.28 -56.53 16 22 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 23 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 26 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 30 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.41 14.10 6.17 -92.70 -0.57 13.53 16 32 H 0.14 3.92 6.40 -2.91 -0.02 3.90 16 33 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 34 H 0.14 3.64 7.66 -2.91 -0.02 3.62 16 35 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.37 19.17 7.80 -92.70 -0.72 18.45 16 40 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -66.77 339.29 1.64 -65.13 By element: Atomic # 1 Polarization: 39.00 SS G_CDS: -0.23 Total: 38.77 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: 4.62 Total: 0.07 kcal Atomic # 7 Polarization: -115.11 SS G_CDS: -3.68 Total: -118.79 kcal Atomic # 8 Polarization: -30.44 SS G_CDS: -1.10 Total: -31.55 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -66.77 1.64 -65.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690625668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.999 kcal (2) G-P(sol) polarization free energy of solvation -66.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds