Wall clock time and date at job start Tue Mar 31 2020 06:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47285 * 2 1 4 4 C 1.52999 * 109.47152 * 119.99962 * 2 1 3 5 5 N 1.46498 * 109.47248 * 174.99690 * 4 2 1 6 6 C 1.34783 * 120.00111 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99717 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99804 * 180.02562 * 6 5 4 9 9 H 1.09003 * 110.66504 * 58.21740 * 8 6 5 10 10 C 1.54699 * 110.75057 * 294.99566 * 8 6 5 11 11 C 1.51648 * 101.92862 * 216.21230 * 10 8 6 12 12 C 1.37740 * 132.16903 * 195.54117 * 11 10 8 13 13 C 1.38355 * 119.97356 * 179.53004 * 12 11 10 14 14 C 1.38285 * 119.76631 * 0.02562 * 13 12 11 15 15 C 1.37933 * 120.35266 * 0.13980 * 14 13 12 16 16 C 1.38877 * 107.04005 * 15.36796 * 11 10 8 17 17 O 1.36139 * 111.23460 * 1.10283 * 16 11 10 18 18 N 1.46500 * 109.47231 * 239.99797 * 2 1 3 19 19 C 1.36942 * 119.99342 * 85.00130 * 18 2 1 20 20 H 1.07992 * 120.00291 * 359.97438 * 19 18 2 21 21 C 1.38815 * 119.99460 * 179.97438 * 19 18 2 22 22 N 1.31620 * 120.00061 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47044 * 90.00152 * 23 21 19 25 25 H 1.48499 * 109.47323 * 210.00426 * 23 21 19 26 26 H 1.48506 * 109.46903 * 330.00503 * 23 21 19 27 27 H 1.09000 * 109.47177 * 60.00010 * 1 2 3 28 28 H 1.08995 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47172 * 299.99753 * 1 2 3 30 30 H 1.09006 * 109.47167 * 55.00048 * 4 2 1 31 31 H 1.09000 * 109.47633 * 295.00171 * 4 2 1 32 32 H 0.97005 * 120.00433 * 0.02562 * 5 4 2 33 33 H 1.09003 * 110.93718 * 98.05666 * 10 8 6 34 34 H 1.08998 * 110.94289 * 334.37860 * 10 8 6 35 35 H 1.07997 * 120.01720 * 359.50585 * 12 11 10 36 36 H 1.07997 * 120.11079 * 180.27227 * 13 12 11 37 37 H 1.08002 * 119.82091 * 180.16039 * 14 13 12 38 38 H 1.07993 * 119.87625 * 180.02562 * 15 14 13 39 39 H 0.96993 * 120.00315 * 265.00224 * 18 2 1 40 40 H 0.97002 * 119.99935 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4293 2.1907 7 8 3.5698 -1.8842 3.1395 8 6 5.6749 -1.5369 2.1305 9 1 6.1286 -0.5489 2.0531 10 6 6.1132 -2.4355 0.9500 11 6 7.3200 -3.1479 1.5294 12 6 8.3375 -3.8685 0.9442 13 6 9.3383 -4.4137 1.7287 14 6 9.3117 -4.2324 3.0993 15 6 8.2918 -3.5140 3.6877 16 6 7.2796 -2.9635 2.9053 17 8 6.1848 -2.2434 3.2743 18 7 2.0183 -0.6906 -1.1961 19 6 2.1491 -0.0074 -2.3757 20 1 1.8918 1.0403 -2.4243 21 6 2.6123 -0.6617 -3.5090 22 7 2.9253 -1.9387 -3.4499 23 14 2.7901 0.2700 -5.1183 24 1 4.1519 0.8561 -5.2031 25 1 2.5803 -0.6616 -6.2554 26 1 1.7793 1.3565 -5.1755 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1370 32 1 3.9825 -0.4623 0.4319 33 1 6.3940 -1.8335 0.0857 34 1 5.3290 -3.1463 0.6894 35 1 8.3540 -4.0083 -0.1266 36 1 10.1396 -4.9754 1.2717 37 1 10.0939 -4.6554 3.7123 38 1 8.2789 -3.3768 4.7589 39 1 2.2490 -1.6317 -1.1526 40 1 3.2487 -2.3960 -4.2419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752884542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:25 Heat of formation + Delta-G solvation = -30.736409 kcal Electronic energy + Delta-G solvation = -22651.994142 eV Core-core repulsion = 19239.390919 eV Total energy + Delta-G solvation = -3412.603224 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.37449 -39.19164 -37.37361 -36.29312 -33.74211 -32.80117 -31.86979 -30.12942 -29.74931 -28.71293 -26.07371 -24.19899 -23.57099 -22.35199 -21.68430 -20.34179 -20.06408 -17.75362 -17.55707 -16.98479 -16.85094 -16.11051 -15.52454 -15.21582 -14.63484 -14.50946 -14.15253 -13.85497 -13.50480 -13.32509 -13.19067 -13.00121 -12.94715 -12.31901 -12.17727 -12.10054 -11.89154 -11.81439 -11.43243 -11.21701 -10.93177 -10.87671 -10.81958 -10.41369 -10.08850 -9.78600 -9.62541 -9.05499 -8.99277 -8.76205 -8.21980 -7.11696 -5.88400 -3.18950 1.18403 1.28058 2.67776 2.75963 3.35012 3.41823 3.42976 3.54633 3.75362 4.34856 4.45826 4.49303 4.77712 4.85057 4.93924 5.00369 5.17912 5.27858 5.37860 5.41429 5.48224 5.51241 5.66814 5.76995 5.86873 5.94759 6.02233 6.12388 6.20139 6.24335 6.31778 6.37266 6.48301 6.50121 6.66841 6.73824 6.97092 7.08842 7.59831 7.76826 8.28898 8.39441 9.41171 9.95165 10.31071 11.33356 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.004156 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.400635 B = 6735.349736 C = 8275.894614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.055 0.945 4 C 0.116 3.884 5 N -0.705 5.705 6 C 0.516 3.484 7 O -0.531 6.531 8 C 0.065 3.935 9 H 0.112 0.888 10 C -0.100 4.100 11 C -0.168 4.168 12 C -0.067 4.067 13 C -0.151 4.151 14 C -0.088 4.088 15 C -0.139 4.139 16 C 0.105 3.895 17 O -0.276 6.276 18 N -0.724 5.724 19 C -0.244 4.244 20 H 0.071 0.929 21 C -0.009 4.009 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.058 0.942 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.385 0.615 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.520 -0.903 10.499 14.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.049 3.951 3 H 0.073 0.927 4 C -0.008 4.008 5 N -0.358 5.358 6 C 0.299 3.701 7 O -0.407 6.407 8 C 0.006 3.994 9 H 0.130 0.870 10 C -0.137 4.137 11 C -0.168 4.168 12 C -0.085 4.085 13 C -0.169 4.169 14 C -0.106 4.106 15 C -0.158 4.158 16 C 0.060 3.940 17 O -0.188 6.188 18 N -0.367 5.367 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.205 4.205 22 N -0.577 5.577 23 Si 0.736 3.264 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.249 0.751 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.219 0.781 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.955 -1.076 11.252 15.062 hybrid contribution 0.286 0.317 -1.541 1.599 sum 10.241 -0.759 9.711 14.134 Atomic orbital electron populations 1.22360 0.98179 1.01350 1.00453 1.20513 0.92768 0.95756 0.86022 0.92741 1.21751 0.78745 1.01398 0.98932 1.45835 1.08465 1.58517 1.22967 1.19905 0.88086 0.78862 0.83200 1.90716 1.69502 1.47199 1.33304 1.23178 0.93563 0.97710 0.84997 0.87049 1.21772 0.95820 0.98416 0.97668 1.20785 0.98141 1.03861 0.94053 1.20374 0.92454 0.95438 1.00260 1.21034 0.99739 1.02398 0.93758 1.20851 0.97341 0.97390 0.95021 1.20231 0.93168 1.02429 0.99937 1.19658 0.87791 0.93544 0.93016 1.86927 1.39294 1.59369 1.33260 1.42482 1.78111 1.10823 1.05267 1.19220 1.37026 0.93913 0.87350 0.91093 1.24732 1.01939 0.95883 0.97976 1.69660 1.50476 1.08581 1.29021 0.86225 0.77779 0.78634 0.83717 1.21696 1.21799 1.20775 0.92249 0.93165 0.94130 0.91611 0.91566 0.75134 0.87514 0.88087 0.85439 0.85501 0.85249 0.85450 0.78080 0.93426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.49 37.15 0.35 -2.37 16 2 C 0.16 2.86 3.05 -67.93 -0.21 2.65 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C 0.12 1.90 5.23 -4.04 -0.02 1.88 16 5 N -0.70 -11.21 5.38 -60.29 -0.32 -11.53 16 6 C 0.52 8.65 7.13 -10.98 -0.08 8.57 16 7 O -0.53 -10.86 16.58 -13.40 -0.22 -11.08 16 8 C 0.07 0.93 4.04 -26.99 -0.11 0.82 16 9 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 10 C -0.10 -1.35 6.63 -26.52 -0.18 -1.52 16 11 C -0.17 -2.26 6.27 -104.10 -0.65 -2.91 16 12 C -0.07 -0.78 10.03 -39.72 -0.40 -1.18 16 13 C -0.15 -1.51 10.07 -39.52 -0.40 -1.91 16 14 C -0.09 -0.87 10.02 -39.68 -0.40 -1.26 16 15 C -0.14 -1.65 10.06 -39.31 -0.40 -2.04 16 16 C 0.11 1.51 7.04 -38.96 -0.27 1.23 16 17 O -0.28 -4.47 10.40 -39.14 -0.41 -4.87 16 18 N -0.72 -16.25 4.56 -53.43 -0.24 -16.49 16 19 C -0.24 -6.17 9.93 -15.06 -0.15 -6.32 16 20 H 0.07 1.76 7.83 -52.49 -0.41 1.34 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -26.15 13.06 55.49 0.72 -25.43 16 23 Si 0.91 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.41 6.41 8.14 -40.82 -0.33 6.08 16 33 H 0.11 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.10 1.51 7.92 -51.93 -0.41 1.10 16 35 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.39 9.38 7.80 -40.82 -0.32 9.06 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -30.92 342.64 -9.01 -39.93 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -5.68 Total: 12.94 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -3.00 Total: -4.69 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.16 Total: -53.45 kcal Atomic # 8 Polarization: -15.33 SS G_CDS: -0.63 Total: -15.96 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.92 -9.01 -39.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752884542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.198 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds