Wall clock time and date at job start Tue Mar 31 2020 06:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47285 * 2 1 4 4 C 1.52999 * 109.47152 * 119.99962 * 2 1 3 5 5 N 1.46498 * 109.47248 * 174.99690 * 4 2 1 6 6 C 1.34783 * 120.00111 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99717 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99804 * 180.02562 * 6 5 4 9 9 H 1.09003 * 110.66504 * 58.21740 * 8 6 5 10 10 C 1.54699 * 110.75057 * 294.99566 * 8 6 5 11 11 C 1.51648 * 101.92862 * 216.21230 * 10 8 6 12 12 C 1.37740 * 132.16903 * 195.54117 * 11 10 8 13 13 C 1.38355 * 119.97356 * 179.53004 * 12 11 10 14 14 C 1.38285 * 119.76631 * 0.02562 * 13 12 11 15 15 C 1.37933 * 120.35266 * 0.13980 * 14 13 12 16 16 C 1.38877 * 107.04005 * 15.36796 * 11 10 8 17 17 O 1.36139 * 111.23460 * 1.10283 * 16 11 10 18 18 N 1.46500 * 109.47231 * 239.99797 * 2 1 3 19 19 C 1.36942 * 119.99342 * 85.00130 * 18 2 1 20 20 H 1.07992 * 120.00291 * 359.97438 * 19 18 2 21 21 C 1.38815 * 119.99460 * 179.97438 * 19 18 2 22 22 N 1.31620 * 120.00061 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00020 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47044 * 90.00152 * 23 21 19 25 25 H 1.48499 * 109.47323 * 210.00426 * 23 21 19 26 26 H 1.48506 * 109.46903 * 330.00503 * 23 21 19 27 27 H 1.09000 * 109.47177 * 60.00010 * 1 2 3 28 28 H 1.08995 * 109.47285 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47172 * 299.99753 * 1 2 3 30 30 H 1.09006 * 109.47167 * 55.00048 * 4 2 1 31 31 H 1.09000 * 109.47633 * 295.00171 * 4 2 1 32 32 H 0.97005 * 120.00433 * 0.02562 * 5 4 2 33 33 H 1.09003 * 110.93718 * 98.05666 * 10 8 6 34 34 H 1.08998 * 110.94289 * 334.37860 * 10 8 6 35 35 H 1.07997 * 120.01720 * 359.50585 * 12 11 10 36 36 H 1.07997 * 120.11079 * 180.27227 * 13 12 11 37 37 H 1.08002 * 119.82091 * 180.16039 * 14 13 12 38 38 H 1.07993 * 119.87625 * 180.02562 * 15 14 13 39 39 H 0.96993 * 120.00315 * 265.00224 * 18 2 1 40 40 H 0.97002 * 119.99935 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8264 1.1905 6 6 4.1730 -1.4293 2.1907 7 8 3.5698 -1.8842 3.1395 8 6 5.6749 -1.5369 2.1305 9 1 6.1286 -0.5489 2.0531 10 6 6.1132 -2.4355 0.9500 11 6 7.3200 -3.1479 1.5294 12 6 8.3375 -3.8685 0.9442 13 6 9.3383 -4.4137 1.7287 14 6 9.3117 -4.2324 3.0993 15 6 8.2918 -3.5140 3.6877 16 6 7.2796 -2.9635 2.9053 17 8 6.1848 -2.2434 3.2743 18 7 2.0183 -0.6906 -1.1961 19 6 2.1491 -0.0074 -2.3757 20 1 1.8918 1.0403 -2.4243 21 6 2.6123 -0.6617 -3.5090 22 7 2.9253 -1.9387 -3.4499 23 14 2.7901 0.2700 -5.1183 24 1 4.1519 0.8561 -5.2031 25 1 2.5803 -0.6616 -6.2554 26 1 1.7793 1.3565 -5.1755 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6053 -1.7198 1.2952 31 1 1.7516 -0.1584 2.1370 32 1 3.9825 -0.4623 0.4319 33 1 6.3940 -1.8335 0.0857 34 1 5.3290 -3.1463 0.6894 35 1 8.3540 -4.0083 -0.1266 36 1 10.1396 -4.9754 1.2717 37 1 10.0939 -4.6554 3.7123 38 1 8.2789 -3.3768 4.7589 39 1 2.2490 -1.6317 -1.1526 40 1 3.2487 -2.3960 -4.2419 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752884542.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:24 Heat of formation + Delta-G solvation = -49.957131 kcal Electronic energy + Delta-G solvation = -22652.827615 eV Core-core repulsion = 19239.390919 eV Total energy + Delta-G solvation = -3413.436697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43740 -40.49604 -38.38849 -37.81206 -35.31361 -34.06324 -33.38797 -31.05247 -30.94324 -30.30419 -27.36441 -25.76165 -25.02999 -23.29133 -22.62560 -21.78235 -21.42966 -19.40259 -18.74153 -18.34596 -17.87059 -17.22901 -16.93171 -16.57181 -16.09095 -15.87659 -15.43524 -15.08958 -14.97848 -14.46658 -14.34721 -14.12160 -14.00021 -13.84808 -13.66208 -13.44522 -13.10357 -13.00437 -12.76144 -12.66568 -12.50290 -12.21716 -12.16662 -11.77329 -11.71044 -11.65511 -11.03431 -10.91132 -10.14888 -9.87519 -9.17941 -9.01222 -7.89808 -5.18852 0.29754 0.38523 1.37210 1.51356 1.53094 1.58316 1.60209 2.50106 2.59272 2.76919 3.26711 3.38646 3.45502 3.72606 3.85984 3.89034 3.93883 3.97840 4.21118 4.29686 4.38339 4.50848 4.54668 4.63335 4.67254 4.71993 4.73578 4.83753 5.06160 5.07060 5.25356 5.32432 5.35932 5.43665 5.53315 5.55877 5.58994 5.62679 6.14496 6.30610 6.43658 7.05793 7.38681 8.09799 8.34904 9.32615 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015644 B = 0.004156 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.400635 B = 6735.349736 C = 8275.894614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.160 3.840 3 H 0.064 0.936 4 C 0.123 3.877 5 N -0.697 5.697 6 C 0.517 3.483 7 O -0.572 6.572 8 C 0.069 3.931 9 H 0.140 0.860 10 C -0.094 4.094 11 C -0.185 4.185 12 C -0.078 4.078 13 C -0.144 4.144 14 C -0.081 4.081 15 C -0.147 4.147 16 C 0.072 3.928 17 O -0.303 6.303 18 N -0.732 5.732 19 C -0.234 4.234 20 H 0.078 0.922 21 C -0.066 4.066 22 N -0.965 5.965 23 Si 0.964 3.036 24 H -0.286 1.286 25 H -0.303 1.303 26 H -0.274 1.274 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.415 0.585 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.140 0.860 36 H 0.159 0.841 37 H 0.166 0.834 38 H 0.139 0.861 39 H 0.373 0.627 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.965 -0.241 10.793 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.082 0.918 4 C -0.002 4.002 5 N -0.350 5.350 6 C 0.302 3.698 7 O -0.452 6.452 8 C 0.010 3.990 9 H 0.157 0.843 10 C -0.132 4.132 11 C -0.186 4.186 12 C -0.096 4.096 13 C -0.162 4.162 14 C -0.099 4.099 15 C -0.166 4.166 16 C 0.027 3.973 17 O -0.217 6.217 18 N -0.373 5.373 19 C -0.366 4.366 20 H 0.096 0.904 21 C -0.259 4.259 22 N -0.615 5.615 23 Si 0.794 3.206 24 H -0.213 1.213 25 H -0.231 1.231 26 H -0.199 1.199 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.252 0.748 33 H 0.137 0.863 34 H 0.096 0.904 35 H 0.157 0.843 36 H 0.177 0.823 37 H 0.183 0.817 38 H 0.156 0.844 39 H 0.205 0.795 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 11.389 -0.365 11.557 16.230 hybrid contribution -0.142 0.094 -1.552 1.561 sum 11.247 -0.272 10.006 15.056 Atomic orbital electron populations 1.22247 0.96811 1.01155 1.01444 1.20675 0.93561 0.95770 0.84795 0.91789 1.21662 0.78964 1.00697 0.98833 1.45784 1.08339 1.58054 1.22791 1.20343 0.89212 0.77806 0.82430 1.90687 1.70590 1.48991 1.34887 1.23232 0.91658 0.99125 0.85031 0.84262 1.21686 0.95556 0.98088 0.97827 1.20884 0.98711 1.05042 0.93940 1.20681 0.92421 0.95238 1.01261 1.21471 0.99603 1.01266 0.93852 1.21300 0.97153 0.95982 0.95468 1.20598 0.93057 1.02275 1.00624 1.20017 0.88346 0.94990 0.93919 1.86868 1.40494 1.60208 1.34113 1.42609 1.78340 1.10330 1.06027 1.19555 1.34787 0.94182 0.88091 0.90405 1.25393 1.03056 0.96605 1.00854 1.69805 1.52481 1.10010 1.29224 0.85285 0.77854 0.77380 0.80051 1.21328 1.23062 1.19872 0.93532 0.93991 0.90805 0.93014 0.89757 0.74768 0.86274 0.90361 0.84256 0.82341 0.81698 0.84352 0.79471 0.94229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.49 71.98 0.68 -4.31 16 2 C 0.16 5.57 3.05 44.99 0.14 5.70 16 3 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 4 C 0.12 3.96 5.23 86.38 0.45 4.41 16 5 N -0.70 -22.14 5.38 -463.05 -2.49 -24.63 16 6 C 0.52 17.60 7.13 87.66 0.63 18.23 16 7 O -0.57 -23.98 16.58 15.11 0.25 -23.73 16 8 C 0.07 1.99 4.04 30.43 0.12 2.11 16 9 H 0.14 3.15 8.14 -2.39 -0.02 3.13 16 10 C -0.09 -2.61 6.63 30.73 0.20 -2.41 16 11 C -0.18 -4.96 6.27 -19.53 -0.12 -5.08 16 12 C -0.08 -1.70 10.03 22.18 0.22 -1.48 16 13 C -0.14 -2.46 10.07 22.31 0.22 -2.23 16 14 C -0.08 -1.37 10.02 22.21 0.22 -1.14 16 15 C -0.15 -3.30 10.06 22.45 0.23 -3.08 16 16 C 0.07 2.06 7.04 22.67 0.16 2.22 16 17 O -0.30 -10.04 10.40 -77.00 -0.80 -10.84 16 18 N -0.73 -32.68 4.56 -322.95 -1.47 -34.15 16 19 C -0.23 -11.70 9.93 84.03 0.83 -10.86 16 20 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 21 C -0.07 -3.51 5.50 84.86 0.47 -3.04 16 22 N -0.96 -55.05 13.06 21.65 0.28 -54.77 16 23 Si 0.96 43.28 29.55 68.60 2.03 45.30 16 24 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.42 12.81 8.14 -92.70 -0.75 12.05 16 33 H 0.12 2.88 8.14 -2.39 -0.02 2.86 16 34 H 0.08 2.48 7.92 -2.39 -0.02 2.46 16 35 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 36 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.37 18.45 7.80 -92.71 -0.72 17.72 16 40 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -67.16 342.64 1.84 -65.32 By element: Atomic # 1 Polarization: 38.89 SS G_CDS: -0.42 Total: 38.47 kcal Atomic # 6 Polarization: -5.43 SS G_CDS: 4.46 Total: -0.97 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -3.68 Total: -113.55 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.55 Total: -34.58 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -67.16 1.84 -65.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752884542.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.362 kcal (2) G-P(sol) polarization free energy of solvation -67.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds