Wall clock time and date at job start Tue Mar 31 2020 06:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47459 * 2 1 4 4 C 1.52999 * 109.47067 * 239.99720 * 2 1 3 5 5 N 1.46498 * 109.47248 * 184.99798 * 4 2 1 6 6 C 1.34783 * 120.00111 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99717 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99804 * 180.02562 * 6 5 4 9 9 H 1.09003 * 110.66504 * 58.21740 * 8 6 5 10 10 C 1.54699 * 110.75057 * 294.99566 * 8 6 5 11 11 C 1.51648 * 101.92862 * 216.21230 * 10 8 6 12 12 C 1.37740 * 132.16903 * 195.54117 * 11 10 8 13 13 C 1.38355 * 119.97356 * 179.53004 * 12 11 10 14 14 C 1.38285 * 119.76631 * 0.02562 * 13 12 11 15 15 C 1.37933 * 120.35266 * 0.13980 * 14 13 12 16 16 C 1.38877 * 107.04005 * 15.36796 * 11 10 8 17 17 O 1.36139 * 111.23460 * 1.10283 * 16 11 10 18 18 N 1.46498 * 109.47329 * 119.99929 * 2 1 3 19 19 C 1.36938 * 120.00171 * 274.99955 * 18 2 1 20 20 H 1.07999 * 119.99442 * 359.97438 * 19 18 2 21 21 C 1.38815 * 120.00012 * 179.97438 * 19 18 2 22 22 N 1.31614 * 120.00170 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99594 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46938 * 90.00139 * 23 21 19 25 25 H 1.48501 * 109.46747 * 209.99992 * 23 21 19 26 26 H 1.48495 * 109.47313 * 330.00064 * 23 21 19 27 27 H 1.08999 * 109.46746 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46813 * 299.99817 * 1 2 3 29 29 H 1.09002 * 109.46814 * 60.00181 * 1 2 3 30 30 H 1.09006 * 109.47167 * 65.00156 * 4 2 1 31 31 H 1.09000 * 109.47633 * 305.00279 * 4 2 1 32 32 H 0.97005 * 120.00433 * 0.02562 * 5 4 2 33 33 H 1.09003 * 110.93718 * 98.05666 * 10 8 6 34 34 H 1.08998 * 110.94289 * 334.37860 * 10 8 6 35 35 H 1.07997 * 120.01720 * 359.50585 * 12 11 10 36 36 H 1.07997 * 120.11079 * 180.27227 * 13 12 11 37 37 H 1.08002 * 119.82091 * 180.16039 * 14 13 12 38 38 H 1.07993 * 119.87625 * 180.02562 * 15 14 13 39 39 H 0.97001 * 119.99773 * 94.99851 * 18 2 1 40 40 H 0.96993 * 120.00273 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1731 -1.4284 -2.1912 7 8 3.5699 -1.8834 -3.1399 8 6 5.6750 -1.5370 -2.1306 9 1 5.9861 -2.0708 -1.2326 10 6 6.3286 -0.1361 -2.1897 11 6 7.5768 -0.4069 -3.0073 12 6 8.7300 0.3206 -3.2027 13 6 9.7349 -0.1808 -4.0108 14 6 9.5760 -1.4121 -4.6200 15 6 8.4205 -2.1406 -4.4283 16 6 7.4034 -1.6422 -3.6177 17 8 6.1909 -2.1788 -3.3092 18 7 2.0184 -0.6906 1.1961 19 6 2.1492 -0.0075 2.3757 20 1 1.8927 1.0405 2.4241 21 6 2.6115 -0.6620 3.5093 22 7 2.9236 -1.9392 3.4504 23 14 2.7892 0.2698 5.1185 24 1 1.5212 0.1785 5.8860 25 1 3.8935 -0.3235 5.9146 26 1 3.0942 1.6950 4.8342 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7516 -0.1584 -2.1370 31 1 1.6054 -1.7199 -1.2952 32 1 3.9825 -0.4628 -0.4316 33 1 6.5861 0.2160 -1.1907 34 1 5.6778 0.5764 -2.6965 35 1 8.8496 1.2821 -2.7257 36 1 10.6418 0.3857 -4.1621 37 1 10.3609 -1.8055 -5.2489 38 1 8.3047 -3.1015 -4.9074 39 1 2.2491 -1.6317 1.1526 40 1 3.2469 -2.3965 4.2423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752884544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:29 Heat of formation + Delta-G solvation = -30.606435 kcal Electronic energy + Delta-G solvation = -22505.239500 eV Core-core repulsion = 19092.641912 eV Total energy + Delta-G solvation = -3412.597588 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.42987 -39.20915 -37.42594 -36.29478 -33.75475 -32.86660 -31.87923 -30.19505 -29.79568 -28.71761 -26.09645 -24.23785 -23.57105 -22.42804 -21.77470 -20.33819 -20.08416 -17.73975 -17.61741 -17.01181 -16.91069 -16.15517 -15.53824 -15.19047 -14.83828 -14.32847 -14.26889 -13.89730 -13.56480 -13.38381 -13.26479 -13.08444 -12.93684 -12.35403 -12.19390 -12.10279 -11.96026 -11.87757 -11.42985 -11.26995 -10.95350 -10.93010 -10.80629 -10.42232 -10.07995 -9.78156 -9.63709 -9.07609 -9.04952 -8.76437 -8.28246 -7.11284 -5.87641 -3.18435 1.10497 1.21219 2.62409 2.79282 3.35952 3.41712 3.43367 3.47241 3.71097 4.24150 4.39857 4.49105 4.69912 4.81589 4.87227 5.00515 5.09280 5.21353 5.37324 5.40264 5.41583 5.51031 5.55639 5.58039 5.84639 5.87239 6.02003 6.12299 6.13170 6.23623 6.24454 6.29202 6.42234 6.50166 6.66617 6.73720 6.96808 7.03803 7.60068 7.76490 8.29562 8.39019 9.41687 9.95873 10.31566 11.34155 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.003647 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.731472 B = 7674.790240 C = 8645.383097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.160 3.840 3 H 0.054 0.946 4 C 0.116 3.884 5 N -0.704 5.704 6 C 0.516 3.484 7 O -0.531 6.531 8 C 0.064 3.936 9 H 0.117 0.883 10 C -0.099 4.099 11 C -0.172 4.172 12 C -0.068 4.068 13 C -0.152 4.152 14 C -0.086 4.086 15 C -0.138 4.138 16 C 0.109 3.891 17 O -0.275 6.275 18 N -0.724 5.724 19 C -0.245 4.245 20 H 0.071 0.929 21 C -0.009 4.009 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.412 0.588 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.385 0.615 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.057 4.275 -13.383 17.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.050 3.950 3 H 0.072 0.928 4 C -0.008 4.008 5 N -0.358 5.358 6 C 0.300 3.700 7 O -0.407 6.407 8 C 0.004 3.996 9 H 0.135 0.865 10 C -0.136 4.136 11 C -0.173 4.173 12 C -0.086 4.086 13 C -0.171 4.171 14 C -0.104 4.104 15 C -0.157 4.157 16 C 0.063 3.937 17 O -0.187 6.187 18 N -0.367 5.367 19 C -0.376 4.376 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.249 0.751 33 H 0.123 0.877 34 H 0.114 0.886 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.219 0.781 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.486 3.887 -14.020 17.934 hybrid contribution 0.284 0.330 1.525 1.586 sum 10.770 4.218 -12.495 17.027 Atomic orbital electron populations 1.22365 0.98187 1.01365 1.00440 1.20512 0.92766 0.95735 0.86026 0.92760 1.21753 0.78734 1.01434 0.98905 1.45833 1.08460 1.58518 1.22941 1.19877 0.88027 0.78875 0.83219 1.90717 1.69488 1.47158 1.33351 1.23222 0.93180 0.94001 0.89154 0.86517 1.21755 0.93776 0.96243 1.01868 1.20755 0.97010 0.95860 1.03688 1.20322 0.91584 0.99230 0.97452 1.21025 0.99540 0.96931 0.99569 1.20868 0.96366 0.94426 0.98733 1.20265 0.91779 1.01575 1.02097 1.19674 0.86038 0.91782 0.96179 1.86949 1.29158 1.59505 1.43096 1.42491 1.78103 1.10857 1.05264 1.19216 1.37115 0.93901 0.87330 0.91083 1.24746 1.01926 0.95901 0.98017 1.69656 1.50435 1.08620 1.29009 0.86217 0.77349 0.78776 0.83961 1.21718 1.21789 1.20734 0.93147 0.92250 0.94138 0.91601 0.91562 0.75123 0.87668 0.88591 0.85614 0.85501 0.85184 0.85330 0.78063 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.49 37.16 0.35 -2.38 16 2 C 0.16 2.87 3.05 -67.93 -0.21 2.66 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C 0.12 1.91 5.23 -4.04 -0.02 1.88 16 5 N -0.70 -11.21 5.38 -60.29 -0.32 -11.53 16 6 C 0.52 8.65 7.13 -10.98 -0.08 8.57 16 7 O -0.53 -10.85 16.58 -13.40 -0.22 -11.07 16 8 C 0.06 0.91 4.04 -26.99 -0.11 0.80 16 9 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 10 C -0.10 -1.16 6.63 -26.52 -0.18 -1.34 16 11 C -0.17 -2.10 6.27 -104.10 -0.65 -2.75 16 12 C -0.07 -0.68 10.03 -39.72 -0.40 -1.08 16 13 C -0.15 -1.37 10.07 -39.52 -0.40 -1.77 16 14 C -0.09 -0.79 10.02 -39.68 -0.40 -1.19 16 15 C -0.14 -1.58 10.06 -39.31 -0.40 -1.98 16 16 C 0.11 1.50 7.04 -38.96 -0.27 1.23 16 17 O -0.27 -4.42 10.40 -39.14 -0.41 -4.83 16 18 N -0.72 -16.39 4.56 -53.43 -0.24 -16.63 16 19 C -0.24 -6.22 9.93 -15.06 -0.15 -6.37 16 20 H 0.07 1.76 7.83 -52.49 -0.41 1.35 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 22 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 23 Si 0.91 21.20 29.55 -169.99 -5.02 16.18 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.41 6.41 8.14 -40.82 -0.33 6.08 16 33 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.10 1.11 7.92 -51.93 -0.41 0.70 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.39 9.50 7.80 -40.82 -0.32 9.18 16 40 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 342.64 15.07 5.16 5.16 Total: -1.00 -31.38 342.64 -9.01 -40.39 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.68 Total: 12.15 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -3.00 Total: -4.06 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.16 Total: -53.93 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.63 Total: -15.90 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.38 -9.01 -40.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752884544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.786 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds