Wall clock time and date at job start Tue Mar 31 2020 06:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47459 * 2 1 4 4 C 1.52999 * 109.47067 * 239.99720 * 2 1 3 5 5 N 1.46498 * 109.47248 * 184.99798 * 4 2 1 6 6 C 1.34783 * 120.00111 * 180.02562 * 5 4 2 7 7 O 1.21278 * 119.99717 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.99804 * 180.02562 * 6 5 4 9 9 H 1.09003 * 110.66504 * 58.21740 * 8 6 5 10 10 C 1.54699 * 110.75057 * 294.99566 * 8 6 5 11 11 C 1.51648 * 101.92862 * 216.21230 * 10 8 6 12 12 C 1.37740 * 132.16903 * 195.54117 * 11 10 8 13 13 C 1.38355 * 119.97356 * 179.53004 * 12 11 10 14 14 C 1.38285 * 119.76631 * 0.02562 * 13 12 11 15 15 C 1.37933 * 120.35266 * 0.13980 * 14 13 12 16 16 C 1.38877 * 107.04005 * 15.36796 * 11 10 8 17 17 O 1.36139 * 111.23460 * 1.10283 * 16 11 10 18 18 N 1.46498 * 109.47329 * 119.99929 * 2 1 3 19 19 C 1.36938 * 120.00171 * 274.99955 * 18 2 1 20 20 H 1.07999 * 119.99442 * 359.97438 * 19 18 2 21 21 C 1.38815 * 120.00012 * 179.97438 * 19 18 2 22 22 N 1.31614 * 120.00170 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99594 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46938 * 90.00139 * 23 21 19 25 25 H 1.48501 * 109.46747 * 209.99992 * 23 21 19 26 26 H 1.48495 * 109.47313 * 330.00064 * 23 21 19 27 27 H 1.08999 * 109.46746 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46813 * 299.99817 * 1 2 3 29 29 H 1.09002 * 109.46814 * 60.00181 * 1 2 3 30 30 H 1.09006 * 109.47167 * 65.00156 * 4 2 1 31 31 H 1.09000 * 109.47633 * 305.00279 * 4 2 1 32 32 H 0.97005 * 120.00433 * 0.02562 * 5 4 2 33 33 H 1.09003 * 110.93718 * 98.05666 * 10 8 6 34 34 H 1.08998 * 110.94289 * 334.37860 * 10 8 6 35 35 H 1.07997 * 120.01720 * 359.50585 * 12 11 10 36 36 H 1.07997 * 120.11079 * 180.27227 * 13 12 11 37 37 H 1.08002 * 119.82091 * 180.16039 * 14 13 12 38 38 H 1.07993 * 119.87625 * 180.02562 * 15 14 13 39 39 H 0.97001 * 119.99773 * 94.99851 * 18 2 1 40 40 H 0.96993 * 120.00273 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8264 -1.1906 6 6 4.1731 -1.4284 -2.1912 7 8 3.5699 -1.8834 -3.1399 8 6 5.6750 -1.5370 -2.1306 9 1 5.9861 -2.0708 -1.2326 10 6 6.3286 -0.1361 -2.1897 11 6 7.5768 -0.4069 -3.0073 12 6 8.7300 0.3206 -3.2027 13 6 9.7349 -0.1808 -4.0108 14 6 9.5760 -1.4121 -4.6200 15 6 8.4205 -2.1406 -4.4283 16 6 7.4034 -1.6422 -3.6177 17 8 6.1909 -2.1788 -3.3092 18 7 2.0184 -0.6906 1.1961 19 6 2.1492 -0.0075 2.3757 20 1 1.8927 1.0405 2.4241 21 6 2.6115 -0.6620 3.5093 22 7 2.9236 -1.9392 3.4504 23 14 2.7892 0.2698 5.1185 24 1 1.5212 0.1785 5.8860 25 1 3.8935 -0.3235 5.9146 26 1 3.0942 1.6950 4.8342 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7516 -0.1584 -2.1370 31 1 1.6054 -1.7199 -1.2952 32 1 3.9825 -0.4628 -0.4316 33 1 6.5861 0.2160 -1.1907 34 1 5.6778 0.5764 -2.6965 35 1 8.8496 1.2821 -2.7257 36 1 10.6418 0.3857 -4.1621 37 1 10.3609 -1.8055 -5.2489 38 1 8.3047 -3.1015 -4.9074 39 1 2.2491 -1.6317 1.1526 40 1 3.2469 -2.3965 4.2423 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752884544.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:28 Heat of formation + Delta-G solvation = -50.366767 kcal Electronic energy + Delta-G solvation = -22506.096372 eV Core-core repulsion = 19092.641912 eV Total energy + Delta-G solvation = -3413.454460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43399 -40.49360 -38.38481 -37.81197 -35.31657 -34.06242 -33.38765 -31.04199 -30.94110 -30.30625 -27.35747 -25.77086 -25.01511 -23.29346 -22.62193 -21.77474 -21.44029 -19.39029 -18.76384 -18.33900 -17.86786 -17.23535 -16.83930 -16.67560 -16.10198 -15.83117 -15.44575 -15.08147 -14.97058 -14.50775 -14.33210 -14.03815 -14.02630 -13.84970 -13.68125 -13.44812 -13.06707 -13.02341 -12.78389 -12.65690 -12.47988 -12.20871 -12.17325 -11.76628 -11.70584 -11.64842 -11.04020 -10.91611 -10.14796 -9.86448 -9.17278 -9.02055 -7.90337 -5.19596 0.30633 0.39318 1.35801 1.51394 1.52899 1.60303 1.62237 2.48725 2.59188 2.78543 3.25941 3.38356 3.45250 3.73046 3.85944 3.89471 3.96945 3.98907 4.21294 4.30726 4.38549 4.51647 4.56004 4.63222 4.67581 4.70878 4.73151 4.83975 5.07041 5.07084 5.25427 5.32706 5.36730 5.43743 5.53783 5.56250 5.58563 5.64307 6.15465 6.30048 6.44050 7.06094 7.37868 8.09517 8.34078 9.32285 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017653 B = 0.003647 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.731472 B = 7674.790240 C = 8645.383097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.161 3.839 3 H 0.065 0.935 4 C 0.123 3.877 5 N -0.697 5.697 6 C 0.518 3.482 7 O -0.573 6.573 8 C 0.063 3.937 9 H 0.125 0.875 10 C -0.090 4.090 11 C -0.184 4.184 12 C -0.073 4.073 13 C -0.145 4.145 14 C -0.083 4.083 15 C -0.152 4.152 16 C 0.067 3.933 17 O -0.307 6.307 18 N -0.733 5.733 19 C -0.233 4.233 20 H 0.080 0.920 21 C -0.070 4.070 22 N -0.967 5.967 23 Si 0.966 3.034 24 H -0.295 1.295 25 H -0.300 1.300 26 H -0.266 1.266 27 H 0.040 0.960 28 H 0.046 0.954 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.415 0.585 33 H 0.126 0.874 34 H 0.095 0.905 35 H 0.150 0.850 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.132 0.868 39 H 0.373 0.627 40 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.548 6.478 -13.945 19.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.083 0.917 4 C -0.002 4.002 5 N -0.349 5.349 6 C 0.303 3.697 7 O -0.452 6.452 8 C 0.004 3.996 9 H 0.142 0.858 10 C -0.127 4.127 11 C -0.185 4.185 12 C -0.091 4.091 13 C -0.163 4.163 14 C -0.101 4.101 15 C -0.170 4.170 16 C 0.023 3.977 17 O -0.221 6.221 18 N -0.374 5.374 19 C -0.365 4.365 20 H 0.098 0.902 21 C -0.262 4.262 22 N -0.618 5.618 23 Si 0.796 3.204 24 H -0.223 1.223 25 H -0.227 1.227 26 H -0.191 1.191 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.253 0.747 33 H 0.144 0.856 34 H 0.113 0.887 35 H 0.168 0.832 36 H 0.178 0.822 37 H 0.180 0.820 38 H 0.150 0.850 39 H 0.205 0.795 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.969 6.148 -14.600 19.855 hybrid contribution -0.151 -0.320 1.577 1.617 sum 11.819 5.828 -13.023 18.527 Atomic orbital electron populations 1.22253 0.96820 1.01150 1.01470 1.20679 0.93547 0.95794 0.84734 0.91669 1.21662 0.78971 1.00711 0.98817 1.45777 1.08313 1.58065 1.22766 1.20319 0.89152 0.77800 0.82436 1.90686 1.70591 1.48992 1.34957 1.23234 0.91294 0.95909 0.89194 0.85763 1.21731 0.93535 0.94406 1.03066 1.20921 0.97853 0.95731 1.03956 1.20701 0.90895 0.99971 0.97519 1.21496 1.00153 0.96711 0.97909 1.21285 0.96010 0.94320 0.98485 1.20590 0.92222 1.02289 1.01941 1.20072 0.86068 0.93187 0.98399 1.86885 1.30750 1.60593 1.43867 1.42633 1.78327 1.10348 1.06081 1.19574 1.34651 0.94224 0.88017 0.90225 1.25436 1.03123 0.96641 1.01021 1.69807 1.52592 1.10146 1.29229 0.85254 0.76436 0.78346 0.80364 1.22313 1.22747 1.19093 0.94033 0.93492 0.90777 0.89779 0.93021 0.74739 0.85577 0.88668 0.83247 0.82190 0.82039 0.84975 0.79537 0.94257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.99 9.49 71.98 0.68 -4.31 16 2 C 0.16 5.56 3.05 44.99 0.14 5.70 16 3 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 4 C 0.12 3.95 5.23 86.38 0.45 4.40 16 5 N -0.70 -22.06 5.38 -463.05 -2.49 -24.55 16 6 C 0.52 17.67 7.13 87.66 0.63 18.29 16 7 O -0.57 -24.11 16.58 15.11 0.25 -23.86 16 8 C 0.06 1.84 4.04 30.43 0.12 1.96 16 9 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 10 C -0.09 -2.05 6.63 30.73 0.20 -1.85 16 11 C -0.18 -4.31 6.27 -19.53 -0.12 -4.43 16 12 C -0.07 -1.29 10.03 22.18 0.22 -1.06 16 13 C -0.14 -2.11 10.07 22.31 0.22 -1.88 16 14 C -0.08 -1.32 10.02 22.21 0.22 -1.10 16 15 C -0.15 -3.39 10.06 22.45 0.23 -3.17 16 16 C 0.07 1.87 7.04 22.67 0.16 2.03 16 17 O -0.31 -10.31 10.40 -77.00 -0.80 -11.11 16 18 N -0.73 -32.86 4.56 -322.94 -1.47 -34.33 16 19 C -0.23 -11.65 9.93 84.03 0.83 -10.81 16 20 H 0.08 3.80 7.83 -2.91 -0.02 3.77 16 21 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 22 N -0.97 -55.95 13.06 21.65 0.28 -55.67 16 23 Si 0.97 43.47 29.55 68.60 2.03 45.50 16 24 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 27 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.08 2.44 8.14 -2.38 -0.02 2.42 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.42 12.74 8.14 -92.70 -0.75 11.99 16 33 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.10 2.14 7.92 -2.39 -0.02 2.12 16 35 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 36 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.16 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.13 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.37 18.59 7.80 -92.71 -0.72 17.87 16 40 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -68.64 342.64 1.84 -66.80 By element: Atomic # 1 Polarization: 37.12 SS G_CDS: -0.42 Total: 36.70 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 4.46 Total: 0.53 kcal Atomic # 7 Polarization: -110.87 SS G_CDS: -3.68 Total: -114.55 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.55 Total: -34.97 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.64 1.84 -66.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752884544.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.432 kcal (2) G-P(sol) polarization free energy of solvation -68.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds