Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47147 * 2 1 4 4 C 1.53006 * 109.46740 * 119.99924 * 2 1 3 5 5 N 1.46498 * 109.46891 * 175.00001 * 4 2 1 6 6 C 1.36936 * 120.00160 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99517 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00501 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99764 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00259 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47418 * 89.99593 * 10 8 6 12 12 H 1.48500 * 109.47135 * 210.00139 * 10 8 6 13 13 H 1.48507 * 109.47093 * 329.99792 * 10 8 6 14 14 N 1.46494 * 109.47189 * 239.99658 * 2 1 3 15 15 C 1.34779 * 119.99856 * 85.00645 * 14 2 1 16 16 O 1.21583 * 120.00137 * 359.97438 * 15 14 2 17 17 C 1.47605 * 120.00189 * 180.02562 * 15 14 2 18 18 C 1.39754 * 120.26659 * 359.97438 * 17 15 14 19 19 C 1.37463 * 120.20630 * 180.18387 * 18 17 15 20 20 C 1.39600 * 120.42922 * 0.04442 * 19 18 17 21 21 C 1.39276 * 119.08573 * 359.60079 * 20 19 18 22 22 C 1.37234 * 120.92356 * 0.56375 * 21 20 19 23 23 C 1.51677 * 106.93983 * 180.59031 * 21 20 19 24 24 C 1.54704 * 101.91226 * 15.73608 * 23 21 20 25 25 O 1.35991 * 129.71152 * 179.57991 * 20 19 18 26 26 H 1.09007 * 109.47120 * 60.00316 * 1 2 3 27 27 H 1.09006 * 109.47347 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47925 * 300.00348 * 1 2 3 29 29 H 1.09002 * 109.46816 * 295.00065 * 4 2 1 30 30 H 1.08997 * 109.47268 * 55.00083 * 4 2 1 31 31 H 0.97002 * 120.00004 * 359.97438 * 5 4 2 32 32 H 0.96993 * 120.00254 * 180.02562 * 9 8 6 33 33 H 0.97000 * 120.00281 * 264.99736 * 14 2 1 34 34 H 1.08000 * 119.89847 * 0.20078 * 18 17 15 35 35 H 1.08000 * 119.78974 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.04135 * 179.61267 * 22 21 20 37 37 H 1.09002 * 110.94940 * 257.56903 * 23 21 20 38 38 H 1.09001 * 110.94488 * 133.89904 * 23 21 20 39 39 H 1.08995 * 110.74237 * 92.89801 * 24 23 21 40 40 H 1.09005 * 110.74064 * 216.04562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.1838 -1.4380 2.2073 7 1 3.6466 -1.8431 3.0522 8 6 5.5672 -1.5371 2.1521 9 7 6.2217 -1.0438 1.1222 10 14 6.4999 -2.3720 3.5386 11 1 6.6325 -3.8213 3.2437 12 1 7.8501 -1.7663 3.6619 13 1 5.7584 -2.1919 4.8127 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8576 1.1613 -2.4118 17 6 2.6386 -0.7142 -3.5624 18 6 2.9725 -2.0701 -3.5060 19 6 3.4337 -2.7161 -4.6283 20 6 3.5741 -2.0261 -5.8337 21 6 3.2326 -0.6769 -5.8853 22 6 2.7745 -0.0222 -4.7695 23 6 3.4752 -0.2137 -7.3091 24 6 3.5852 -1.5575 -8.0676 25 8 4.0139 -2.4687 -7.0420 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.7515 -0.1583 2.1370 30 1 1.6053 -1.7198 1.2952 31 1 3.9823 -0.4629 0.4317 32 1 7.1884 -1.1134 1.0834 33 1 2.2491 -1.6318 -1.1525 34 1 2.8676 -2.6122 -2.5778 35 1 3.6894 -3.7642 -4.5772 36 1 2.5197 1.0259 -4.8241 37 1 4.4039 0.3522 -7.3819 38 1 2.6335 0.3734 -7.6765 39 1 2.6162 -1.8552 -8.4681 40 1 4.3267 -1.4917 -8.8640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754285491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = -31.885412 kcal Electronic energy + Delta-G solvation = -22572.585187 eV Core-core repulsion = 19159.932139 eV Total energy + Delta-G solvation = -3412.653048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26884 -39.60717 -37.19672 -36.02695 -33.67274 -32.92154 -31.55914 -30.38616 -29.75264 -29.09645 -25.69395 -24.24435 -23.21359 -22.57250 -21.93142 -20.82184 -20.01136 -17.73563 -17.54839 -17.07515 -16.54273 -16.25679 -15.72601 -14.81936 -14.70201 -14.34861 -14.14961 -13.69148 -13.57441 -13.35736 -13.21848 -13.12645 -12.68704 -12.61978 -12.31031 -12.19608 -12.08967 -11.96339 -11.58709 -11.00800 -10.93168 -10.85918 -10.83313 -10.44424 -10.05414 -9.74375 -9.64503 -9.03043 -8.92184 -8.72065 -8.22988 -6.96372 -5.77764 -3.08050 0.85917 1.25106 2.91047 3.10569 3.42135 3.46818 3.48318 3.49829 3.89100 4.19957 4.38576 4.57178 4.67064 4.74876 4.93400 5.06731 5.12295 5.18073 5.30808 5.43542 5.49699 5.51459 5.53661 5.55162 5.67142 5.89581 6.02297 6.08020 6.12588 6.20020 6.22037 6.30076 6.38732 6.41665 6.49110 6.70682 6.94747 6.99763 7.67872 7.88577 8.39758 8.55020 9.51577 10.07541 10.42955 11.44374 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.004019 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.189873 B = 6964.569263 C = 8232.368883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.088 0.912 4 C 0.144 3.856 5 N -0.732 5.732 6 C -0.244 4.244 7 H 0.071 0.929 8 C -0.011 4.011 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.706 5.706 15 C 0.564 3.436 16 O -0.549 6.549 17 C -0.157 4.157 18 C -0.042 4.042 19 C -0.144 4.144 20 C 0.126 3.874 21 C -0.189 4.189 22 C -0.010 4.010 23 C -0.108 4.108 24 C 0.051 3.949 25 O -0.303 6.303 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.024 0.976 31 H 0.386 0.614 32 H 0.256 0.744 33 H 0.403 0.597 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.137 0.863 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.077 0.923 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.565 -1.512 -16.880 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.029 3.971 3 H 0.106 0.894 4 C 0.016 3.984 5 N -0.377 5.377 6 C -0.375 4.375 7 H 0.089 0.911 8 C -0.207 4.207 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.208 1.208 14 N -0.356 5.356 15 C 0.352 3.648 16 O -0.428 6.428 17 C -0.160 4.160 18 C -0.061 4.061 19 C -0.162 4.162 20 C 0.080 3.920 21 C -0.190 4.190 22 C -0.029 4.029 23 C -0.145 4.145 24 C -0.024 4.024 25 O -0.216 6.216 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.220 0.780 32 H 0.065 0.935 33 H 0.239 0.761 34 H 0.157 0.843 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -9.603 -0.947 -16.794 19.369 hybrid contribution 0.951 -0.683 0.516 1.280 sum -8.652 -1.630 -16.277 18.506 Atomic orbital electron populations 1.22102 0.95449 1.01876 1.02170 1.21265 0.93373 0.98080 0.84420 0.89406 1.20992 0.86887 0.96965 0.93579 1.42371 0.99729 1.70335 1.25285 1.19212 0.89429 1.29632 0.99259 0.91138 1.24752 0.96439 1.01493 0.98053 1.69670 1.07279 1.50616 1.30217 0.86194 0.79423 0.78984 0.81583 1.21712 1.21785 1.20766 1.45895 1.66206 1.14371 1.09166 1.18005 0.77421 0.86344 0.83058 1.90735 1.51314 1.15498 1.85295 1.19824 1.07315 0.94458 0.94385 1.21111 0.93896 0.93325 0.97744 1.20171 1.05449 1.00724 0.89893 1.19858 0.92935 0.92043 0.87124 1.20645 1.07650 0.94142 0.96574 1.20283 0.93248 1.00037 0.89345 1.21783 1.03864 0.98040 0.90821 1.23851 1.01246 0.86925 0.90354 1.86788 1.71115 1.49858 1.13874 0.92407 0.92570 0.91614 0.94806 0.95782 0.77955 0.93461 0.76132 0.84296 0.84736 0.84492 0.88967 0.88905 0.90434 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.48 37.16 0.35 -1.82 16 2 C 0.13 2.27 2.73 -67.93 -0.19 2.08 16 3 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 4 C 0.14 2.79 5.82 -4.04 -0.02 2.77 16 5 N -0.73 -18.17 5.43 -59.91 -0.33 -18.49 16 6 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 7 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 8 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 9 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 10 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 14 N -0.71 -11.68 4.47 -54.83 -0.24 -11.93 16 15 C 0.56 9.84 7.73 -12.44 -0.10 9.74 16 16 O -0.55 -11.03 16.02 5.29 0.08 -10.94 16 17 C -0.16 -2.38 5.88 -104.92 -0.62 -3.00 16 18 C -0.04 -0.57 9.52 -39.30 -0.37 -0.94 16 19 C -0.14 -1.84 10.05 -39.36 -0.40 -2.24 16 20 C 0.13 1.64 7.05 -38.69 -0.27 1.36 16 21 C -0.19 -2.34 6.26 -104.12 -0.65 -2.99 16 22 C -0.01 -0.14 9.57 -39.36 -0.38 -0.52 16 23 C -0.11 -0.93 7.12 -26.50 -0.19 -1.12 16 24 C 0.05 0.40 8.00 38.05 0.30 0.70 16 25 O -0.30 -3.61 11.09 -19.71 -0.22 -3.83 16 26 H 0.06 0.83 8.14 -51.92 -0.42 0.40 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.39 10.30 7.33 -40.82 -0.30 10.00 16 32 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 33 H 0.40 6.23 6.64 -40.82 -0.27 5.96 16 34 H 0.14 1.69 6.40 -52.49 -0.34 1.36 16 35 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.14 1.87 7.66 -52.49 -0.40 1.47 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -33.28 338.74 -8.15 -41.43 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.48 Total: 12.00 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.77 Total: -3.24 kcal Atomic # 7 Polarization: -57.89 SS G_CDS: 0.15 Total: -57.74 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.13 Total: -14.77 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.28 -8.15 -41.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754285491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.541 kcal (2) G-P(sol) polarization free energy of solvation -33.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds