Wall clock time and date at job start Tue Mar 31 2020 06:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47147 * 2 1 4 4 C 1.53006 * 109.46740 * 119.99924 * 2 1 3 5 5 N 1.46498 * 109.46891 * 175.00001 * 4 2 1 6 6 C 1.36936 * 120.00160 * 179.97438 * 5 4 2 7 7 H 1.08003 * 119.99517 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00501 * 180.02562 * 6 5 4 9 9 N 1.31622 * 119.99764 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 120.00259 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47418 * 89.99593 * 10 8 6 12 12 H 1.48500 * 109.47135 * 210.00139 * 10 8 6 13 13 H 1.48507 * 109.47093 * 329.99792 * 10 8 6 14 14 N 1.46494 * 109.47189 * 239.99658 * 2 1 3 15 15 C 1.34779 * 119.99856 * 85.00645 * 14 2 1 16 16 O 1.21583 * 120.00137 * 359.97438 * 15 14 2 17 17 C 1.47605 * 120.00189 * 180.02562 * 15 14 2 18 18 C 1.39754 * 120.26659 * 359.97438 * 17 15 14 19 19 C 1.37463 * 120.20630 * 180.18387 * 18 17 15 20 20 C 1.39600 * 120.42922 * 0.04442 * 19 18 17 21 21 C 1.39276 * 119.08573 * 359.60079 * 20 19 18 22 22 C 1.37234 * 120.92356 * 0.56375 * 21 20 19 23 23 C 1.51677 * 106.93983 * 180.59031 * 21 20 19 24 24 C 1.54704 * 101.91226 * 15.73608 * 23 21 20 25 25 O 1.35991 * 129.71152 * 179.57991 * 20 19 18 26 26 H 1.09007 * 109.47120 * 60.00316 * 1 2 3 27 27 H 1.09006 * 109.47347 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47925 * 300.00348 * 1 2 3 29 29 H 1.09002 * 109.46816 * 295.00065 * 4 2 1 30 30 H 1.08997 * 109.47268 * 55.00083 * 4 2 1 31 31 H 0.97002 * 120.00004 * 359.97438 * 5 4 2 32 32 H 0.96993 * 120.00254 * 180.02562 * 9 8 6 33 33 H 0.97000 * 120.00281 * 264.99736 * 14 2 1 34 34 H 1.08000 * 119.89847 * 0.20078 * 18 17 15 35 35 H 1.08000 * 119.78974 * 180.02562 * 19 18 17 36 36 H 1.08001 * 120.04135 * 179.61267 * 22 21 20 37 37 H 1.09002 * 110.94940 * 257.56903 * 23 21 20 38 38 H 1.09001 * 110.94488 * 133.89904 * 23 21 20 39 39 H 1.08995 * 110.74237 * 92.89801 * 24 23 21 40 40 H 1.09005 * 110.74064 * 216.04562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.4999 -0.8264 1.1907 6 6 4.1838 -1.4380 2.2073 7 1 3.6466 -1.8431 3.0522 8 6 5.5672 -1.5371 2.1521 9 7 6.2217 -1.0438 1.1222 10 14 6.4999 -2.3720 3.5386 11 1 6.6325 -3.8213 3.2437 12 1 7.8501 -1.7663 3.6619 13 1 5.7584 -2.1919 4.8127 14 7 2.0183 -0.6906 -1.1961 15 6 2.1471 -0.0183 -2.3571 16 8 1.8576 1.1613 -2.4118 17 6 2.6386 -0.7142 -3.5624 18 6 2.9725 -2.0701 -3.5060 19 6 3.4337 -2.7161 -4.6283 20 6 3.5741 -2.0261 -5.8337 21 6 3.2326 -0.6769 -5.8853 22 6 2.7745 -0.0222 -4.7695 23 6 3.4752 -0.2137 -7.3091 24 6 3.5852 -1.5575 -8.0676 25 8 4.0139 -2.4687 -7.0420 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3635 0.5138 0.8899 29 1 1.7515 -0.1583 2.1370 30 1 1.6053 -1.7198 1.2952 31 1 3.9823 -0.4629 0.4317 32 1 7.1884 -1.1134 1.0834 33 1 2.2491 -1.6318 -1.1525 34 1 2.8676 -2.6122 -2.5778 35 1 3.6894 -3.7642 -4.5772 36 1 2.5197 1.0259 -4.8241 37 1 4.4039 0.3522 -7.3819 38 1 2.6335 0.3734 -7.6765 39 1 2.6162 -1.8552 -8.4681 40 1 4.3267 -1.4917 -8.8640 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754285491.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:30 Heat of formation + Delta-G solvation = -54.285196 kcal Electronic energy + Delta-G solvation = -22573.556514 eV Core-core repulsion = 19159.932139 eV Total energy + Delta-G solvation = -3413.624376 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.18783 -40.90371 -38.30661 -37.53113 -35.48296 -33.85430 -33.10089 -31.94168 -30.89319 -30.04964 -27.41990 -25.36963 -24.42651 -24.06760 -22.84939 -22.18728 -21.32082 -19.31194 -18.66584 -18.45265 -17.66033 -17.20076 -16.87446 -16.67876 -16.04605 -15.66433 -15.34634 -15.20358 -15.14422 -14.61072 -14.22115 -14.02281 -13.95061 -13.72678 -13.66344 -13.51483 -13.35266 -13.04856 -12.76987 -12.65764 -12.64182 -12.14538 -11.92346 -11.87335 -11.78086 -11.69212 -11.07596 -10.92349 -10.11296 -10.02771 -9.23026 -9.00838 -7.93256 -5.23362 -0.23326 0.23851 1.49121 1.50468 1.58914 1.75646 2.16833 2.24116 2.57079 2.75108 3.39828 3.41315 3.60938 3.68548 3.82805 3.88211 4.03818 4.13126 4.16427 4.18811 4.31473 4.46384 4.52064 4.62514 4.79014 4.81376 4.85666 4.87660 4.93934 4.98059 5.07323 5.13070 5.21175 5.25850 5.31603 5.40437 5.51631 5.57936 6.06169 6.26918 6.55089 7.20373 7.34301 8.07788 8.31469 9.29736 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015602 B = 0.004019 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.189873 B = 6964.569263 C = 8232.368883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.139 3.861 3 H 0.060 0.940 4 C 0.145 3.855 5 N -0.745 5.745 6 C -0.245 4.245 7 H 0.080 0.920 8 C -0.073 4.073 9 N -0.969 5.969 10 Si 0.973 3.027 11 H -0.285 1.285 12 H -0.300 1.300 13 H -0.269 1.269 14 N -0.702 5.702 15 C 0.561 3.439 16 O -0.584 6.584 17 C -0.179 4.179 18 C -0.044 4.044 19 C -0.151 4.151 20 C 0.123 3.877 21 C -0.192 4.192 22 C -0.021 4.021 23 C -0.107 4.107 24 C 0.047 3.953 25 O -0.316 6.316 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.373 0.627 32 H 0.250 0.750 33 H 0.408 0.592 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.134 0.866 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.300 -2.676 -17.554 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.034 3.966 3 H 0.078 0.922 4 C 0.018 3.982 5 N -0.388 5.388 6 C -0.376 4.376 7 H 0.098 0.902 8 C -0.265 4.265 9 N -0.619 5.619 10 Si 0.802 3.198 11 H -0.212 1.212 12 H -0.227 1.227 13 H -0.194 1.194 14 N -0.352 5.352 15 C 0.350 3.650 16 O -0.466 6.466 17 C -0.183 4.183 18 C -0.062 4.062 19 C -0.169 4.169 20 C 0.076 3.924 21 C -0.193 4.193 22 C -0.040 4.040 23 C -0.143 4.143 24 C -0.027 4.027 25 O -0.230 6.230 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.101 0.899 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.205 0.795 32 H 0.058 0.942 33 H 0.245 0.755 34 H 0.165 0.835 35 H 0.170 0.830 36 H 0.151 0.849 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.392 -2.137 -17.452 20.423 hybrid contribution 1.133 -0.318 0.645 1.342 sum -9.259 -2.455 -16.806 19.344 Atomic orbital electron populations 1.22006 0.92462 1.03238 1.02720 1.21158 0.95522 0.96205 0.83726 0.92168 1.21150 0.84019 0.98134 0.94856 1.42561 1.01884 1.70031 1.24328 1.19645 0.89872 1.28399 0.99696 0.90174 1.25555 0.97530 1.02982 1.00473 1.69839 1.06988 1.52741 1.32355 0.85145 0.77531 0.77843 0.79236 1.21186 1.22710 1.19404 1.45867 1.65958 1.14528 1.08889 1.18376 0.76795 0.86025 0.83779 1.90700 1.53066 1.16940 1.85913 1.19763 1.09228 0.95302 0.93965 1.21192 0.93833 0.92712 0.98513 1.20398 1.05125 1.01640 0.89751 1.20076 0.92263 0.92334 0.87692 1.21006 1.06282 0.94168 0.97863 1.20341 0.93916 1.00023 0.89727 1.21931 1.05124 0.98928 0.88345 1.24215 1.03208 0.85489 0.89768 1.86776 1.71110 1.51077 1.14020 0.92992 0.90748 0.89927 0.94196 0.93927 0.79464 0.94161 0.75513 0.83495 0.82999 0.84859 0.88180 0.86785 0.88643 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 9.48 71.98 0.68 -3.14 16 2 C 0.14 4.72 2.73 44.99 0.12 4.84 16 3 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 4 C 0.15 5.50 5.82 86.38 0.50 6.00 16 5 N -0.74 -37.02 5.43 -343.45 -1.87 -38.89 16 6 C -0.24 -13.33 9.99 84.03 0.84 -12.49 16 7 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 8 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 9 N -0.97 -59.42 13.06 21.65 0.28 -59.13 16 10 Si 0.97 45.69 29.55 68.60 2.03 47.72 16 11 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 12 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 N -0.70 -23.56 4.47 -445.64 -1.99 -25.55 16 15 C 0.56 20.23 7.73 86.72 0.67 20.90 16 16 O -0.58 -24.43 16.02 -3.98 -0.06 -24.50 16 17 C -0.18 -5.60 5.88 -20.06 -0.12 -5.72 16 18 C -0.04 -1.19 9.52 22.45 0.21 -0.98 16 19 C -0.15 -3.76 10.05 22.42 0.23 -3.54 16 20 C 0.12 3.05 7.05 22.85 0.16 3.21 16 21 C -0.19 -4.60 6.26 -19.54 -0.12 -4.72 16 22 C -0.02 -0.60 9.57 22.41 0.21 -0.38 16 23 C -0.11 -1.59 7.12 30.74 0.22 -1.37 16 24 C 0.05 0.60 8.00 72.56 0.58 1.18 16 25 O -0.32 -6.91 11.09 -93.45 -1.04 -7.94 16 26 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.37 20.35 7.33 -92.71 -0.68 19.67 16 32 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 33 H 0.41 12.68 6.64 -92.71 -0.62 12.07 16 34 H 0.15 3.60 6.40 -2.91 -0.02 3.58 16 35 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 36 H 0.13 3.78 7.66 -2.91 -0.02 3.76 16 37 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.88 16 40 H 0.14 0.96 8.14 -2.38 -0.02 0.94 16 Total: -1.00 -72.06 338.74 1.79 -70.28 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: -0.23 Total: 37.90 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 4.66 Total: 0.12 kcal Atomic # 7 Polarization: -120.00 SS G_CDS: -3.57 Total: -123.57 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -1.10 Total: -32.44 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.72 kcal Total: -72.06 1.79 -70.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754285491.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.991 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds