Wall clock time and date at job start Tue Mar 31 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21290 * 120.00411 * 2 1 4 4 C 1.46854 * 119.99460 * 179.97438 * 2 1 3 5 5 C 1.40059 * 120.09328 * 186.14091 * 4 2 1 6 6 C 1.37087 * 119.89394 * 179.97438 * 5 4 2 7 7 C 1.39219 * 120.09975 * 359.97438 * 6 5 4 8 8 N 1.39319 * 119.89872 * 180.02562 * 7 6 5 9 9 C 1.34769 * 120.00209 * 145.58432 * 8 7 6 10 10 O 1.21274 * 120.00265 * 354.70198 * 9 8 7 11 11 C 1.50706 * 120.00247 * 174.97164 * 9 8 7 12 12 H 1.09006 * 109.46753 * 299.73078 * 11 9 8 13 13 C 1.52990 * 109.46824 * 59.72451 * 11 9 8 14 14 N 1.46495 * 109.47293 * 179.73005 * 11 9 8 15 15 C 1.46505 * 119.99872 * 300.00006 * 14 11 9 16 16 C 1.36937 * 120.00006 * 119.99894 * 14 11 9 17 17 H 1.08002 * 120.00046 * 30.29634 * 16 14 11 18 18 C 1.38809 * 120.00004 * 210.29357 * 16 14 11 19 19 N 1.31625 * 120.00053 * 356.57474 * 18 16 14 20 20 Si 1.86796 * 120.00165 * 176.57699 * 18 16 14 21 21 H 1.48503 * 109.47044 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47198 * 120.00082 * 20 18 16 23 23 H 1.48503 * 109.47291 * 240.00108 * 20 18 16 24 24 C 1.39208 * 120.20369 * 0.27473 * 7 6 5 25 25 C 1.37091 * 120.10216 * 359.44503 * 24 7 6 26 26 H 1.08995 * 109.47291 * 184.76002 * 1 2 3 27 27 H 1.08999 * 109.46701 * 304.75999 * 1 2 3 28 28 H 1.09000 * 109.46675 * 64.75984 * 1 2 3 29 29 H 1.07994 * 120.05648 * 359.95908 * 5 4 2 30 30 H 1.07992 * 119.95002 * 179.97438 * 6 5 4 31 31 H 0.97005 * 119.99618 * 325.59190 * 8 7 6 32 32 H 1.08998 * 109.47405 * 180.02562 * 13 11 9 33 33 H 1.08997 * 109.47726 * 300.00242 * 13 11 9 34 34 H 1.09003 * 109.47297 * 60.00362 * 13 11 9 35 35 H 1.08997 * 109.47344 * 94.99529 * 15 14 11 36 36 H 1.08995 * 109.46594 * 214.99520 * 15 14 11 37 37 H 1.09001 * 109.46820 * 334.98984 * 15 14 11 38 38 H 0.96996 * 119.99802 * 179.97438 * 19 18 16 39 39 H 1.08001 * 119.95405 * 179.70263 * 24 7 6 40 40 H 1.07998 * 120.05344 * 180.27077 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1136 1.0504 0.0000 4 6 2.2412 -1.2719 0.0006 5 6 3.6358 -1.2777 0.1302 6 6 4.3169 -2.4674 0.1308 7 6 3.6245 -3.6684 0.0033 8 7 4.3209 -4.8750 0.0049 9 6 3.7676 -5.9717 0.5592 10 8 2.7068 -5.8877 1.1410 11 6 4.4699 -7.3016 0.4614 12 1 4.5895 -7.5730 -0.5875 13 6 5.8460 -7.2013 1.1224 14 7 3.6741 -8.3254 1.1430 15 6 3.3721 -8.1887 2.5701 16 6 3.2125 -9.4101 0.4463 17 1 3.7744 -9.7916 -0.3934 18 6 2.0224 -10.0195 0.8194 19 7 1.3722 -9.5975 1.8832 20 14 1.3438 -11.4386 -0.1880 21 1 2.2560 -11.7186 -1.3259 22 1 1.2351 -12.6465 0.6688 23 1 0.0003 -11.0783 -0.7083 24 6 2.2389 -3.6671 -0.1310 25 6 1.5488 -2.4826 -0.1269 26 1 -0.3633 -1.0241 0.0853 27 1 -0.3633 0.5859 0.8443 28 1 -0.3633 0.4382 -0.9296 29 1 4.1737 -0.3465 0.2293 30 1 5.3922 -2.4729 0.2302 31 1 5.2042 -4.9257 -0.3929 32 1 6.3542 -8.1629 1.0513 33 1 6.4381 -6.4395 0.6152 34 1 5.7264 -6.9298 2.1713 35 1 2.3957 -7.7197 2.6916 36 1 3.3622 -9.1743 3.0353 37 1 4.1339 -7.5704 3.0450 38 1 0.5404 -10.0231 2.1436 39 1 1.7063 -4.6010 -0.2345 40 1 0.4735 -2.4828 -0.2267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120734310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:29 Heat of formation + Delta-G solvation = -14.095788 kcal Electronic energy + Delta-G solvation = -22752.101316 eV Core-core repulsion = 19340.219684 eV Total energy + Delta-G solvation = -3411.881632 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.46267 -39.45980 -37.87454 -35.55294 -34.44554 -32.30105 -31.64181 -30.59780 -29.43011 -28.42466 -26.02425 -24.57985 -23.48381 -22.81254 -21.53155 -19.89679 -19.38239 -17.83376 -17.03786 -16.60883 -16.20453 -15.48437 -15.09670 -15.05621 -14.68974 -14.45577 -14.00546 -13.81221 -13.65982 -13.29383 -12.98236 -12.68446 -12.62606 -12.36126 -12.29127 -12.15539 -11.91674 -11.46038 -11.18264 -10.96579 -10.83320 -10.64996 -10.41802 -10.13275 -10.00631 -9.97125 -9.82699 -9.22968 -8.97579 -8.52793 -8.00912 -6.74989 -5.80205 -3.33651 0.62947 1.43532 2.32315 3.20646 3.27713 3.38566 3.40421 3.42073 3.87796 4.03635 4.41074 4.71738 4.90876 4.94812 5.19417 5.21810 5.24899 5.27604 5.34498 5.45191 5.52094 5.64251 5.73641 5.78483 5.84098 6.02826 6.08445 6.26191 6.32605 6.36009 6.42425 6.57159 6.61455 6.88377 7.06868 7.45156 7.46398 7.66015 7.75730 7.99182 8.33885 8.69202 9.17159 9.75233 10.27528 11.22399 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022626 B = 0.003676 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.212932 B = 7614.276035 C = 8382.785648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.401 3.599 3 O -0.474 6.474 4 C -0.211 4.211 5 C -0.038 4.038 6 C -0.174 4.174 7 C 0.203 3.797 8 N -0.688 5.688 9 C 0.483 3.517 10 O -0.487 6.487 11 C 0.158 3.842 12 H 0.092 0.908 13 C -0.158 4.158 14 N -0.569 5.569 15 C 0.167 3.833 16 C -0.274 4.274 17 H 0.070 0.930 18 C 0.019 3.981 19 N -0.888 5.888 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.288 1.288 24 C -0.141 4.141 25 C -0.048 4.048 26 H 0.085 0.915 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.132 0.868 30 H 0.129 0.871 31 H 0.407 0.593 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.043 0.957 36 H 0.043 0.957 37 H -0.008 1.008 38 H 0.254 0.746 39 H 0.142 0.858 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 13.628 -4.670 15.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.281 3.719 3 O -0.351 6.351 4 C -0.213 4.213 5 C -0.057 4.057 6 C -0.195 4.195 7 C 0.105 3.895 8 N -0.335 5.335 9 C 0.269 3.731 10 O -0.357 6.357 11 C 0.044 3.956 12 H 0.110 0.890 13 C -0.218 4.218 14 N -0.289 5.289 15 C 0.023 3.977 16 C -0.404 4.404 17 H 0.088 0.912 18 C -0.182 4.182 19 N -0.530 5.530 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.215 1.215 23 H -0.214 1.214 24 C -0.161 4.161 25 C -0.067 4.067 26 H 0.104 0.896 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.149 0.851 30 H 0.147 0.853 31 H 0.243 0.757 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.010 0.990 38 H 0.065 0.935 39 H 0.160 0.840 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.929 13.962 -4.093 15.071 hybrid contribution -0.160 -0.814 -0.675 1.070 sum 3.769 13.148 -4.768 14.485 Atomic orbital electron populations 1.22247 0.94166 1.04967 1.04645 1.22360 0.91527 0.87649 0.70337 1.90512 1.72169 1.34527 1.37925 1.20361 0.94632 0.94586 1.11696 1.20987 0.92976 0.97875 0.93823 1.20770 1.00320 0.91224 1.07175 1.18257 0.92139 0.86169 0.92943 1.44460 1.21232 1.08121 1.59716 1.23737 0.86897 0.85873 0.76620 1.90707 1.21709 1.84632 1.38641 1.20612 0.91483 0.85090 0.98449 0.89028 1.22248 0.96509 1.01733 1.01294 1.43769 1.60876 1.18686 1.05567 1.20875 0.96574 0.98318 0.81941 1.19198 1.02524 1.04835 1.13816 0.91221 1.25374 0.95917 0.99463 0.97470 1.70100 1.16703 1.41839 1.24319 0.86239 0.79059 0.81597 0.79979 1.20126 1.21507 1.21417 1.21120 0.93168 0.99466 1.02347 1.21245 0.99922 0.90936 0.94624 0.89643 0.89027 0.88890 0.85056 0.85307 0.75728 0.91402 0.93443 0.92562 0.93826 0.93851 0.99002 0.93523 0.83992 0.84854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.70 10.16 36.01 0.37 -1.33 16 2 C 0.40 4.81 7.20 -30.82 -0.22 4.59 16 3 O -0.47 -7.00 17.10 5.55 0.09 -6.91 16 4 C -0.21 -2.67 5.87 -105.05 -0.62 -3.28 16 5 C -0.04 -0.47 9.56 -39.32 -0.38 -0.84 16 6 C -0.17 -2.11 9.92 -39.63 -0.39 -2.50 16 7 C 0.20 2.92 6.25 -83.73 -0.52 2.39 16 8 N -0.69 -9.76 5.23 -9.85 -0.05 -9.81 16 9 C 0.48 9.11 6.77 -10.99 -0.07 9.03 16 10 O -0.49 -11.40 12.61 5.56 0.07 -11.33 16 11 C 0.16 3.00 3.13 -69.09 -0.22 2.78 16 12 H 0.09 1.63 7.89 -51.93 -0.41 1.22 16 13 C -0.16 -2.39 9.07 37.15 0.34 -2.05 16 14 N -0.57 -13.98 2.58 -174.82 -0.45 -14.43 16 15 C 0.17 4.23 7.60 59.85 0.45 4.69 16 16 C -0.27 -7.32 9.52 -15.06 -0.14 -7.47 16 17 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 18 C 0.02 0.51 5.37 -17.43 -0.09 0.42 16 19 N -0.89 -25.84 10.43 55.49 0.58 -25.26 16 20 Si 0.90 21.26 29.55 -169.99 -5.02 16.23 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.14 -2.16 8.60 -39.64 -0.34 -2.50 16 25 C -0.05 -0.62 9.37 -39.32 -0.37 -0.99 16 26 H 0.08 0.62 5.69 -51.93 -0.30 0.32 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.13 1.49 7.65 -52.49 -0.40 1.09 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 31 H 0.41 4.26 8.08 -40.82 -0.33 3.93 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.53 7.44 -51.93 -0.39 0.14 16 34 H 0.06 0.91 6.66 -51.93 -0.35 0.56 16 35 H 0.04 1.25 6.62 -51.93 -0.34 0.90 16 36 H 0.04 1.16 7.38 -51.93 -0.38 0.78 16 37 H -0.01 -0.19 6.44 -51.93 -0.33 -0.53 16 38 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.14 2.54 6.50 -52.49 -0.34 2.20 16 40 H 0.13 1.35 6.03 -52.49 -0.32 1.04 16 LS Contribution 332.25 15.07 5.01 5.01 Total: -1.00 -33.48 332.25 -7.11 -40.59 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -5.12 Total: 2.98 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.21 Total: 2.93 kcal Atomic # 7 Polarization: -49.58 SS G_CDS: 0.08 Total: -49.50 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.17 Total: -18.24 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.48 -7.11 -40.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120734310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.492 kcal (2) G-P(sol) polarization free energy of solvation -33.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds