Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99444 * 2 1 4 4 N 1.34772 * 120.00275 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00305 * 180.02562 * 4 2 1 6 6 C 1.50693 * 109.47112 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00341 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99760 * 179.72587 * 6 5 4 9 9 C 1.46500 * 120.00027 * 175.34956 * 8 6 5 10 10 H 1.08998 * 109.47554 * 38.56949 * 9 8 6 11 11 C 1.53000 * 109.47180 * 158.57509 * 9 8 6 12 12 C 1.50700 * 109.46897 * 294.52856 * 11 9 8 13 13 H 1.08001 * 119.99898 * 355.15357 * 12 11 9 14 14 C 1.37878 * 120.00052 * 175.14830 * 12 11 9 15 15 N 1.31513 * 119.99872 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99987 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46854 * 89.99624 * 16 14 12 18 18 H 1.48492 * 109.46992 * 209.99634 * 16 14 12 19 19 H 1.48496 * 109.47038 * 329.99731 * 16 14 12 20 20 C 1.50703 * 109.47107 * 278.57087 * 9 8 6 21 21 C 1.38234 * 119.99988 * 319.72676 * 20 9 8 22 22 C 1.38233 * 119.99945 * 179.78480 * 21 20 9 23 23 C 1.38233 * 120.00273 * 0.44618 * 22 21 20 24 24 C 1.38236 * 119.99674 * 359.80494 * 23 22 21 25 25 C 1.38231 * 119.99964 * 139.99976 * 20 9 8 26 26 H 1.08996 * 109.47638 * 270.00114 * 1 2 3 27 27 H 1.08998 * 109.46956 * 30.00698 * 1 2 3 28 28 H 1.09002 * 109.46793 * 149.99703 * 1 2 3 29 29 H 0.97003 * 119.99947 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.46690 * 59.99999 * 5 4 2 31 31 H 1.09009 * 109.46846 * 300.00398 * 5 4 2 32 32 H 0.97003 * 120.00049 * 355.34918 * 8 6 5 33 33 H 1.08999 * 109.47355 * 54.52944 * 11 9 8 34 34 H 1.09004 * 109.46907 * 174.53019 * 11 9 8 35 35 H 0.97002 * 120.00021 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.00092 * 0.02562 * 21 20 9 37 37 H 1.08000 * 120.00341 * 180.27636 * 22 21 20 38 38 H 1.07993 * 120.00573 * 179.83713 * 23 22 21 39 39 H 1.08002 * 120.00373 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.99947 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0011 6 6 4.1483 -2.5879 0.0010 7 8 3.3602 -3.5097 0.0009 8 7 5.4734 -2.8341 -0.0042 9 6 5.9629 -4.2111 0.0986 10 1 5.3151 -4.8711 -0.4783 11 6 7.3888 -4.2877 -0.4510 12 6 7.3744 -3.9895 -1.9281 13 1 6.4349 -3.8447 -2.4407 14 6 8.5607 -3.9013 -2.6252 15 7 8.5482 -3.6416 -3.9144 16 14 10.1858 -4.1523 -1.7388 17 1 10.5556 -5.5899 -1.7806 18 1 11.2424 -3.3498 -2.4055 19 1 10.0511 -3.7168 -0.3255 20 6 5.9578 -4.6395 1.5434 21 6 6.3540 -3.7541 2.5283 22 6 6.3450 -4.1457 3.8540 23 6 5.9489 -5.4256 4.1940 24 6 5.5577 -6.3127 3.2086 25 6 5.5625 -5.9197 1.8833 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6959 -2.0072 0.0005 30 1 4.0089 -0.6531 0.8911 31 1 4.0096 -0.6534 -0.8889 32 1 6.1029 -2.0996 -0.0759 33 1 8.0153 -3.5575 0.0610 34 1 7.7883 -5.2884 -0.2862 35 1 9.3827 -3.5799 -4.4049 36 1 6.6667 -2.7552 2.2624 37 1 6.6503 -3.4525 4.6239 38 1 5.9444 -5.7324 5.2294 39 1 5.2477 -7.3127 3.4742 40 1 5.2568 -6.6127 1.1134 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153124708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -58.179030 kcal Electronic energy + Delta-G solvation = -22654.576534 eV Core-core repulsion = 19240.783309 eV Total energy + Delta-G solvation = -3413.793225 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.13255 -39.36665 -38.45008 -35.53534 -34.31491 -32.76071 -31.54881 -30.65155 -30.35525 -29.39328 -27.07445 -24.82892 -22.41042 -21.84546 -20.75503 -20.51707 -19.87661 -17.61587 -17.18165 -16.62416 -16.25626 -15.90093 -15.85063 -15.25106 -15.03007 -14.53540 -14.39344 -14.06662 -13.51127 -13.29427 -13.15255 -12.93470 -12.72468 -12.69711 -12.61422 -12.45371 -12.04357 -11.87042 -11.44365 -11.17638 -10.79597 -10.73655 -10.20797 -10.02883 -9.90434 -9.67210 -9.39646 -9.19831 -8.71699 -8.66730 -8.63466 -8.37934 -6.16283 -4.17011 1.60046 1.63929 2.56361 2.86055 2.98044 3.22353 3.30903 3.32019 3.69445 4.07401 4.33222 4.73804 4.93374 5.09249 5.11722 5.13098 5.17360 5.21657 5.22901 5.35717 5.39863 5.46617 5.67498 5.74192 5.76486 5.94307 6.14998 6.22978 6.28134 6.34931 6.64004 6.68861 6.70141 6.85269 6.97674 7.21667 7.24246 7.46315 7.58517 7.87134 8.15736 8.37467 8.49198 8.88430 9.44043 10.96341 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.005379 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.206024 B = 5203.899300 C = 7194.937272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.511 3.489 3 O -0.552 6.552 4 N -0.715 5.715 5 C 0.097 3.903 6 C 0.509 3.491 7 O -0.548 6.548 8 N -0.694 5.694 9 C 0.195 3.805 10 H 0.092 0.908 11 C -0.015 4.015 12 C -0.524 4.524 13 H 0.076 0.924 14 C 0.072 3.928 15 N -0.896 5.896 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.264 1.264 20 C -0.078 4.078 21 C -0.110 4.110 22 C -0.125 4.125 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.106 4.106 26 H 0.093 0.907 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.412 0.588 30 H 0.096 0.904 31 H 0.100 0.900 32 H 0.406 0.594 33 H 0.027 0.973 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.023 1.416 13.272 16.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.298 3.702 3 O -0.431 6.431 4 N -0.371 5.371 5 C -0.031 4.031 6 C 0.294 3.706 7 O -0.426 6.426 8 N -0.343 5.343 9 C 0.091 3.909 10 H 0.110 0.890 11 C -0.053 4.053 12 C -0.562 4.562 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.702 3.298 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.189 1.189 20 C -0.080 4.080 21 C -0.128 4.128 22 C -0.143 4.143 23 C -0.150 4.150 24 C -0.140 4.140 25 C -0.125 4.125 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.100 0.900 29 H 0.250 0.750 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.241 0.759 33 H 0.045 0.955 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.134 0.866 38 H 0.133 0.867 39 H 0.135 0.865 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.009 1.524 13.105 16.560 hybrid contribution 1.157 -0.246 0.271 1.213 sum -8.852 1.279 13.376 16.091 Atomic orbital electron populations 1.21852 0.91410 1.04980 1.04755 1.20804 0.90705 0.83141 0.75584 1.90727 1.70836 1.31440 1.50048 1.45823 1.06290 1.09841 1.75148 1.21097 0.82019 0.95176 1.04805 1.20351 0.83345 0.90529 0.76349 1.90648 1.55304 1.45863 1.50821 1.45821 1.06025 1.10117 1.72353 1.19981 0.98841 0.82227 0.89828 0.88982 1.19895 0.89860 0.97926 0.97591 1.20999 0.94845 1.49317 0.90991 0.90634 1.24985 0.99009 0.94361 0.94663 1.69902 1.27404 1.48709 1.07413 0.86858 0.83863 0.78660 0.80383 1.20192 1.21300 1.18915 1.20546 0.96790 0.94104 0.96516 1.20950 0.99717 0.99634 0.92508 1.21066 1.00704 0.96354 0.96147 1.21033 1.00916 0.94191 0.98905 1.21072 1.00539 0.99362 0.93050 1.21038 0.99242 0.95974 0.96244 0.88864 0.88832 0.89997 0.74994 0.88638 0.88186 0.75902 0.95526 0.95186 0.92552 0.86418 0.86606 0.86713 0.86456 0.85988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.30 36.01 0.37 -0.98 16 2 C 0.51 6.42 7.94 -10.99 -0.09 6.33 16 3 O -0.55 -9.15 17.10 5.55 0.09 -9.05 16 4 N -0.72 -8.99 5.53 -61.47 -0.34 -9.33 16 5 C 0.10 1.30 6.16 -5.20 -0.03 1.27 16 6 C 0.51 8.20 7.80 -10.99 -0.09 8.11 16 7 O -0.55 -10.20 15.36 5.56 0.09 -10.11 16 8 N -0.69 -11.52 4.09 -54.93 -0.22 -11.74 16 9 C 0.20 3.64 2.11 -69.08 -0.15 3.50 16 10 H 0.09 1.90 7.49 -51.93 -0.39 1.51 16 11 C -0.02 -0.33 3.56 -27.88 -0.10 -0.42 16 12 C -0.52 -13.63 9.40 -34.44 -0.32 -13.95 16 13 H 0.08 2.17 7.99 -52.49 -0.42 1.75 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 15 N -0.90 -26.33 13.96 55.43 0.77 -25.55 16 16 Si 0.88 20.43 27.57 -169.99 -4.69 15.74 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.26 -5.86 6.40 56.52 0.36 -5.50 16 20 C -0.08 -1.31 4.86 -104.62 -0.51 -1.82 16 21 C -0.11 -1.66 9.32 -39.58 -0.37 -2.03 16 22 C -0.12 -1.67 10.05 -39.58 -0.40 -2.06 16 23 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 24 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 25 C -0.11 -1.67 9.67 -39.58 -0.38 -2.05 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.41 4.87 7.44 -40.82 -0.30 4.57 16 30 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.10 1.36 8.14 -51.92 -0.42 0.94 16 32 H 0.41 6.17 8.57 -40.82 -0.35 5.82 16 33 H 0.03 0.56 6.86 -51.93 -0.36 0.20 16 34 H 0.03 0.66 7.81 -51.93 -0.41 0.25 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.12 1.64 7.73 -52.49 -0.41 1.24 16 37 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.11 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.12 1.82 8.04 -52.49 -0.42 1.40 16 LS Contribution 346.07 15.07 5.22 5.22 Total: -1.00 -33.03 346.07 -7.64 -40.67 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.61 Total: 10.53 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -2.95 Total: -6.37 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: 0.21 Total: -46.62 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: 0.18 Total: -19.16 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.69 Total: 15.74 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.03 -7.64 -40.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153124708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.510 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds