Wall clock time and date at job start Tue Mar 31 2020 06:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21283 * 119.99444 * 2 1 4 4 N 1.34772 * 120.00275 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00305 * 180.02562 * 4 2 1 6 6 C 1.50693 * 109.47112 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00341 * 359.97438 * 6 5 4 8 8 N 1.34779 * 119.99760 * 179.72587 * 6 5 4 9 9 C 1.46500 * 120.00027 * 175.34956 * 8 6 5 10 10 H 1.08998 * 109.47554 * 38.56949 * 9 8 6 11 11 C 1.53000 * 109.47180 * 158.57509 * 9 8 6 12 12 C 1.50700 * 109.46897 * 294.52856 * 11 9 8 13 13 H 1.08001 * 119.99898 * 355.15357 * 12 11 9 14 14 C 1.37878 * 120.00052 * 175.14830 * 12 11 9 15 15 N 1.31513 * 119.99872 * 179.97438 * 14 12 11 16 16 Si 1.86803 * 119.99987 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.46854 * 89.99624 * 16 14 12 18 18 H 1.48492 * 109.46992 * 209.99634 * 16 14 12 19 19 H 1.48496 * 109.47038 * 329.99731 * 16 14 12 20 20 C 1.50703 * 109.47107 * 278.57087 * 9 8 6 21 21 C 1.38234 * 119.99988 * 319.72676 * 20 9 8 22 22 C 1.38233 * 119.99945 * 179.78480 * 21 20 9 23 23 C 1.38233 * 120.00273 * 0.44618 * 22 21 20 24 24 C 1.38236 * 119.99674 * 359.80494 * 23 22 21 25 25 C 1.38231 * 119.99964 * 139.99976 * 20 9 8 26 26 H 1.08996 * 109.47638 * 270.00114 * 1 2 3 27 27 H 1.08998 * 109.46956 * 30.00698 * 1 2 3 28 28 H 1.09002 * 109.46793 * 149.99703 * 1 2 3 29 29 H 0.97003 * 119.99947 * 0.02562 * 4 2 1 30 30 H 1.08999 * 109.46690 * 59.99999 * 5 4 2 31 31 H 1.09009 * 109.46846 * 300.00398 * 5 4 2 32 32 H 0.97003 * 120.00049 * 355.34918 * 8 6 5 33 33 H 1.08999 * 109.47355 * 54.52944 * 11 9 8 34 34 H 1.09004 * 109.46907 * 174.53019 * 11 9 8 35 35 H 0.97002 * 120.00021 * 180.02562 * 15 14 12 36 36 H 1.08000 * 120.00092 * 0.02562 * 21 20 9 37 37 H 1.08000 * 120.00341 * 180.27636 * 22 21 20 38 38 H 1.07993 * 120.00573 * 179.83713 * 23 22 21 39 39 H 1.08002 * 120.00373 * 180.02562 * 24 23 22 40 40 H 1.07996 * 119.99947 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0011 6 6 4.1483 -2.5879 0.0010 7 8 3.3602 -3.5097 0.0009 8 7 5.4734 -2.8341 -0.0042 9 6 5.9629 -4.2111 0.0986 10 1 5.3151 -4.8711 -0.4783 11 6 7.3888 -4.2877 -0.4510 12 6 7.3744 -3.9895 -1.9281 13 1 6.4349 -3.8447 -2.4407 14 6 8.5607 -3.9013 -2.6252 15 7 8.5482 -3.6416 -3.9144 16 14 10.1858 -4.1523 -1.7388 17 1 10.5556 -5.5899 -1.7806 18 1 11.2424 -3.3498 -2.4055 19 1 10.0511 -3.7168 -0.3255 20 6 5.9578 -4.6395 1.5434 21 6 6.3540 -3.7541 2.5283 22 6 6.3450 -4.1457 3.8540 23 6 5.9489 -5.4256 4.1940 24 6 5.5577 -6.3127 3.2086 25 6 5.5625 -5.9197 1.8833 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6959 -2.0072 0.0005 30 1 4.0089 -0.6531 0.8911 31 1 4.0096 -0.6534 -0.8889 32 1 6.1029 -2.0996 -0.0759 33 1 8.0153 -3.5575 0.0610 34 1 7.7883 -5.2884 -0.2862 35 1 9.3827 -3.5799 -4.4049 36 1 6.6667 -2.7552 2.2624 37 1 6.6503 -3.4525 4.6239 38 1 5.9444 -5.7324 5.2294 39 1 5.2477 -7.3127 3.4742 40 1 5.2568 -6.6127 1.1134 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153124708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:35 Heat of formation + Delta-G solvation = -81.340481 kcal Electronic energy + Delta-G solvation = -22655.580890 eV Core-core repulsion = 19240.783309 eV Total energy + Delta-G solvation = -3414.797581 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.38540 -40.48266 -39.63404 -36.96573 -35.47503 -34.71816 -32.90610 -31.71897 -31.23366 -30.97004 -28.24060 -26.36988 -23.60749 -23.28406 -22.06001 -21.61932 -21.22006 -19.08026 -18.72702 -17.89675 -17.45246 -17.11650 -16.97286 -16.53862 -16.28291 -16.06182 -15.65245 -15.30888 -14.85758 -14.58778 -14.39643 -14.18089 -14.11551 -13.88925 -13.73521 -13.56509 -13.30780 -13.07368 -12.91362 -12.58418 -12.42412 -11.92282 -11.74316 -11.72349 -11.42546 -11.10945 -11.04255 -10.77464 -10.29832 -10.05637 -9.76146 -9.55265 -8.28264 -6.33412 0.48457 0.55531 1.37852 1.39427 1.49456 1.51122 1.61239 1.87432 2.35576 2.52897 2.95460 3.07676 3.64046 3.90477 3.96028 4.02837 4.20710 4.27933 4.32570 4.34335 4.36451 4.54033 4.58211 4.67691 4.72218 4.76247 5.01930 5.05596 5.14419 5.17988 5.22568 5.27157 5.50248 5.55656 5.64827 5.65101 5.84090 6.17272 6.24612 6.47550 6.54380 6.74267 7.15244 7.17539 7.31216 8.87912 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.010503 B = 0.005379 C = 0.003891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2665.206024 B = 5203.899300 C = 7194.937272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.507 3.493 3 O -0.597 6.597 4 N -0.714 5.714 5 C 0.103 3.897 6 C 0.511 3.489 7 O -0.575 6.575 8 N -0.694 5.694 9 C 0.206 3.794 10 H 0.060 0.940 11 C -0.007 4.007 12 C -0.520 4.520 13 H 0.032 0.968 14 C 0.013 3.987 15 N -0.948 5.948 16 Si 0.943 3.057 17 H -0.273 1.273 18 H -0.287 1.287 19 H -0.240 1.240 20 C -0.100 4.100 21 C -0.121 4.121 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.128 4.128 26 H 0.114 0.886 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.417 0.583 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.412 0.588 33 H 0.040 0.960 34 H 0.030 0.970 35 H 0.265 0.735 36 H 0.125 0.875 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.143 0.857 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.938 1.361 16.561 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.296 3.704 3 O -0.478 6.478 4 N -0.369 5.369 5 C -0.024 4.024 6 C 0.297 3.703 7 O -0.455 6.455 8 N -0.343 5.343 9 C 0.101 3.899 10 H 0.078 0.922 11 C -0.044 4.044 12 C -0.558 4.558 13 H 0.051 0.949 14 C -0.185 4.185 15 N -0.588 5.588 16 Si 0.767 3.233 17 H -0.198 1.198 18 H -0.213 1.213 19 H -0.163 1.163 20 C -0.101 4.101 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.147 4.147 26 H 0.133 0.867 27 H 0.118 0.882 28 H 0.120 0.880 29 H 0.255 0.745 30 H 0.130 0.870 31 H 0.116 0.884 32 H 0.248 0.752 33 H 0.058 0.942 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.143 0.857 37 H 0.163 0.837 38 H 0.167 0.833 39 H 0.161 0.839 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.945 1.460 16.415 19.248 hybrid contribution 1.031 -0.273 -0.755 1.307 sum -8.913 1.187 15.660 18.058 Atomic orbital electron populations 1.21895 0.87483 1.06260 1.06495 1.21662 0.92505 0.82115 0.74092 1.90706 1.72101 1.32811 1.52180 1.45906 1.05813 1.10334 1.74885 1.21022 0.82938 0.93020 1.05438 1.20738 0.82799 0.91367 0.75381 1.90628 1.55839 1.47022 1.52017 1.45778 1.06572 1.09600 1.72353 1.19574 0.96275 0.82728 0.91287 0.92219 1.19757 0.92192 0.97941 0.94551 1.21198 0.93077 1.48151 0.93341 0.94935 1.25885 1.03129 0.94208 0.95261 1.70061 1.28452 1.50871 1.09428 0.85767 0.78684 0.78585 0.80249 1.19840 1.21325 1.16295 1.20346 0.99347 0.95196 0.95231 1.21113 0.99924 0.99701 0.93151 1.21436 0.99705 0.97229 0.95867 1.21478 0.99002 0.93626 1.00374 1.21387 0.99784 1.00822 0.92089 1.21177 1.00217 0.95725 0.97548 0.86738 0.88248 0.87998 0.74468 0.87005 0.88444 0.75165 0.94211 0.95215 0.92557 0.85741 0.83733 0.83345 0.83943 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 10.30 71.24 0.73 -1.49 16 2 C 0.51 12.29 7.94 87.66 0.70 12.99 16 3 O -0.60 -19.61 17.10 -3.04 -0.05 -19.66 16 4 N -0.71 -17.56 5.53 -466.79 -2.58 -20.14 16 5 C 0.10 2.78 6.16 85.63 0.53 3.31 16 6 C 0.51 16.77 7.80 87.65 0.68 17.45 16 7 O -0.57 -21.94 15.36 -3.03 -0.05 -21.99 16 8 N -0.69 -23.53 4.09 -446.10 -1.82 -25.36 16 9 C 0.21 7.89 2.11 44.25 0.09 7.99 16 10 H 0.06 2.63 7.49 -2.39 -0.02 2.61 16 11 C -0.01 -0.29 3.56 29.85 0.11 -0.19 16 12 C -0.52 -27.97 9.40 25.60 0.24 -27.73 16 13 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 14 C 0.01 0.70 5.47 84.66 0.46 1.16 16 15 N -0.95 -57.56 13.96 21.45 0.30 -57.26 16 16 Si 0.94 42.00 27.57 68.60 1.89 43.89 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.24 -9.63 6.40 99.48 0.64 -9.00 16 20 C -0.10 -3.30 4.86 -19.87 -0.10 -3.40 16 21 C -0.12 -3.41 9.32 22.27 0.21 -3.21 16 22 C -0.12 -2.89 10.05 22.27 0.22 -2.66 16 23 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 24 C -0.12 -3.01 10.05 22.27 0.22 -2.78 16 25 C -0.13 -3.94 9.67 22.27 0.22 -3.73 16 26 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.42 9.61 7.44 -92.71 -0.69 8.92 16 30 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 32 H 0.41 12.70 8.57 -92.71 -0.79 11.90 16 33 H 0.04 1.62 6.86 -2.39 -0.02 1.61 16 34 H 0.03 1.29 7.81 -2.39 -0.02 1.27 16 35 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 36 H 0.12 3.24 7.73 -2.91 -0.02 3.21 16 37 H 0.14 2.49 8.06 -2.91 -0.02 2.46 16 38 H 0.15 2.22 8.06 -2.91 -0.02 2.19 16 39 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 40 H 0.12 3.54 8.04 -2.91 -0.02 3.52 16 Total: -1.00 -73.97 346.07 1.74 -72.24 By element: Atomic # 1 Polarization: 33.58 SS G_CDS: -0.49 Total: 33.09 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 4.54 Total: -4.81 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.11 Total: -102.76 kcal Atomic # 8 Polarization: -41.55 SS G_CDS: -0.10 Total: -41.65 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 1.89 Total: 43.89 kcal Total: -73.97 1.74 -72.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153124708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.102 kcal (2) G-P(sol) polarization free energy of solvation -73.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds