Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29808 * 120.00080 * 2 1 4 4 N 1.40095 * 119.99896 * 4.24198 * 3 2 1 5 5 C 1.47155 * 120.97982 * 293.72866 * 4 3 2 6 6 C 1.53295 * 108.38555 * 230.51210 * 5 4 3 7 7 O 1.42959 * 109.22687 * 307.70488 * 6 5 4 8 8 C 1.42959 * 114.16584 * 62.57531 * 7 6 5 9 9 C 1.47149 * 120.98537 * 113.70991 * 4 3 2 10 10 C 1.47395 * 120.00062 * 180.02562 * 2 1 3 11 11 C 1.39788 * 120.08767 * 179.72467 * 10 2 1 12 12 C 1.37736 * 119.91369 * 179.81294 * 11 10 2 13 13 C 1.39071 * 120.08322 * 0.44022 * 12 11 10 14 14 O 1.35669 * 119.90931 * 179.76540 * 13 12 11 15 15 C 1.34814 * 116.99570 * 174.13317 * 14 13 12 16 16 H 1.07998 * 120.00163 * 5.09581 * 15 14 13 17 17 C 1.38622 * 119.99829 * 185.09056 * 15 14 13 18 18 N 1.31577 * 119.99872 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46717 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47055 * 120.00197 * 19 17 15 22 22 H 1.48494 * 109.47088 * 240.00260 * 19 17 15 23 23 C 1.39062 * 120.17459 * 359.78995 * 13 12 11 24 24 C 1.37739 * 120.09009 * 0.02562 * 23 13 12 25 25 H 1.09001 * 109.47039 * 94.84232 * 1 2 3 26 26 H 1.09001 * 109.47076 * 214.83793 * 1 2 3 27 27 H 1.08997 * 109.46941 * 334.84116 * 1 2 3 28 28 H 1.09001 * 109.67751 * 110.79048 * 5 4 3 29 29 H 1.09002 * 109.68317 * 350.24355 * 5 4 3 30 30 H 1.08997 * 109.51174 * 187.77323 * 6 5 4 31 31 H 1.09004 * 109.55211 * 67.65547 * 6 5 4 32 32 H 1.08996 * 109.51311 * 57.34956 * 8 7 6 33 33 H 1.09007 * 109.50850 * 177.49949 * 8 7 6 34 34 H 1.08991 * 109.68296 * 249.21110 * 9 4 3 35 35 H 1.09004 * 109.68068 * 9.76098 * 9 4 3 36 36 H 1.08001 * 120.04468 * 359.97438 * 11 10 2 37 37 H 1.07995 * 119.96057 * 180.20898 * 12 11 10 38 38 H 0.97001 * 120.00203 * 179.97438 * 18 17 15 39 39 H 1.08007 * 119.95703 * 179.97438 * 23 13 12 40 40 H 1.07994 * 120.04505 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1242 0.0000 4 7 1.4585 2.3358 0.0897 5 6 0.5682 2.7794 -0.9948 6 6 0.9343 4.2221 -1.3612 7 8 0.9391 5.0221 -0.1764 8 6 1.9102 4.6243 0.7944 9 6 1.5939 3.2022 1.2714 10 6 2.2440 -1.2765 -0.0006 11 6 3.6419 -1.2786 -0.0064 12 6 4.3269 -2.4735 -0.0030 13 6 3.6297 -3.6768 -0.0031 14 8 4.3081 -4.8517 -0.0045 15 6 3.5794 -5.9793 0.1183 16 1 2.5007 -5.9266 0.1292 17 6 4.2146 -7.2062 0.2304 18 7 5.5287 -7.2703 0.2175 19 14 3.2049 -8.7687 0.3999 20 1 1.7596 -8.4279 0.3867 21 1 3.5086 -9.6795 -0.7329 22 1 3.5438 -9.4407 1.6800 23 6 2.2391 -3.6789 -0.0021 24 6 1.5467 -2.4881 -0.0017 25 1 -0.3633 -0.0867 -1.0240 26 1 -0.3633 -0.8435 0.5871 27 1 -0.3633 0.9302 0.4369 28 1 -0.4680 2.7375 -0.6593 29 1 0.6994 2.1351 -1.8642 30 1 0.2005 4.6166 -2.0640 31 1 1.9237 4.2426 -1.8183 32 1 2.9033 4.6455 0.3458 33 1 1.8783 5.3083 1.6426 34 1 0.6610 3.2029 1.8350 35 1 2.4045 2.8379 1.9027 36 1 4.1840 -0.3445 -0.0109 37 1 5.4069 -2.4760 -0.0041 38 1 5.9733 -8.1288 0.2963 39 1 1.7012 -4.6154 -0.0026 40 1 0.4668 -2.4906 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000916616632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = 10.376931 kcal Electronic energy + Delta-G solvation = -22202.521649 eV Core-core repulsion = 18791.701233 eV Total energy + Delta-G solvation = -3410.820416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.39564 -39.07397 -37.38642 -35.90670 -33.16499 -32.31145 -31.49670 -30.53731 -29.20271 -28.17484 -25.84767 -25.42590 -24.17125 -22.36233 -21.81908 -20.73155 -18.82369 -18.08839 -17.20296 -16.36499 -16.27365 -15.50573 -15.30062 -15.20447 -14.89416 -14.61454 -14.28910 -13.99577 -13.84359 -13.57350 -13.36482 -12.83702 -12.83470 -12.55447 -11.99538 -11.89432 -11.79629 -11.58237 -11.51583 -11.21020 -11.09611 -11.04578 -10.70461 -10.52221 -10.48970 -9.90487 -9.57357 -9.39437 -8.90966 -8.29776 -7.62521 -7.07260 -6.58752 -4.15618 1.49650 2.19285 2.81876 2.93814 3.06725 3.10955 3.12822 3.67326 3.86313 4.54561 4.71326 4.78513 4.89733 4.93782 4.98637 5.07758 5.12809 5.16824 5.29728 5.34331 5.39162 5.42777 5.50164 5.58040 5.61637 5.73704 5.79508 5.81336 6.02219 6.11334 6.29636 6.60738 6.63694 6.80784 6.93700 7.01270 7.16545 7.22644 7.28376 7.34346 7.69619 7.86480 8.71334 8.86335 9.54111 10.58359 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044777 B = 0.002725 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.177286 B =10271.000741 C =10609.936740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.187 3.813 3 N -0.278 5.278 4 N -0.584 5.584 5 C 0.101 3.899 6 C 0.051 3.949 7 O -0.386 6.386 8 C 0.049 3.951 9 C 0.127 3.873 10 C -0.168 4.168 11 C -0.025 4.025 12 C -0.202 4.202 13 C 0.169 3.831 14 O -0.167 6.167 15 C -0.392 4.392 16 H 0.096 0.904 17 C 0.040 3.960 18 N -0.855 5.855 19 Si 0.944 3.056 20 H -0.265 1.265 21 H -0.275 1.275 22 H -0.274 1.274 23 C -0.241 4.241 24 C -0.038 4.038 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.272 0.728 39 H 0.131 0.869 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.914 16.356 -0.302 19.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.000 4.000 3 N -0.081 5.081 4 N -0.405 5.405 5 C -0.024 4.024 6 C -0.027 4.027 7 O -0.304 6.304 8 C -0.029 4.029 9 C 0.003 3.997 10 C -0.172 4.172 11 C -0.045 4.045 12 C -0.221 4.221 13 C 0.113 3.887 14 O -0.068 6.068 15 C -0.468 4.468 16 H 0.114 0.886 17 C -0.165 4.165 18 N -0.489 5.489 19 Si 0.768 3.232 20 H -0.189 1.189 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.260 4.260 24 C -0.059 4.059 25 H 0.092 0.908 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.082 0.918 39 H 0.149 0.851 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.763 16.791 -0.307 18.943 hybrid contribution -1.301 -1.325 -0.056 1.858 sum -10.064 15.466 -0.363 18.456 Atomic orbital electron populations 1.21467 0.93569 1.03426 1.02773 1.24116 0.93071 0.93198 0.89575 1.75697 1.22252 0.90579 1.19539 1.49707 1.54643 1.16566 1.19623 1.22115 0.93285 0.95527 0.91495 1.22946 1.01685 0.90786 0.87266 1.87897 1.58466 1.55506 1.28546 1.23015 0.92047 0.95570 0.92283 1.21755 1.01076 0.89392 0.87486 1.17801 0.92814 0.89333 1.17221 1.20843 0.92789 0.96832 0.94050 1.20195 0.99740 0.89914 1.12295 1.19578 0.90712 0.87365 0.91091 1.83951 1.35403 1.11162 1.76327 1.21460 0.91399 0.81993 1.51972 0.88632 1.25360 0.96178 0.98781 0.96200 1.70056 1.07645 1.26505 1.44688 0.85601 0.79215 0.79962 0.78413 1.18947 1.20014 1.19993 1.21060 0.94032 0.98407 1.12544 1.20874 0.98419 0.91199 0.95381 0.90760 0.90553 0.91146 0.93318 0.90656 0.88573 0.92734 0.92584 0.88393 0.93329 0.89810 0.85850 0.86154 0.91789 0.85136 0.86927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 8.39 36.01 0.30 -1.57 16 2 C 0.19 2.87 7.01 -79.72 -0.56 2.31 16 3 N -0.28 -4.36 10.40 35.10 0.37 -4.00 16 4 N -0.58 -7.75 2.79 -113.06 -0.32 -8.07 16 5 C 0.10 1.13 5.35 -3.53 -0.02 1.11 16 6 C 0.05 0.51 6.98 37.31 0.26 0.78 16 7 O -0.39 -4.38 10.74 -35.23 -0.38 -4.76 16 8 C 0.05 0.48 6.98 37.31 0.26 0.74 16 9 C 0.13 1.43 7.01 -3.54 -0.02 1.41 16 10 C -0.17 -2.93 5.87 -105.01 -0.62 -3.55 16 11 C -0.03 -0.46 9.57 -39.19 -0.37 -0.84 16 12 C -0.20 -4.19 9.97 -39.46 -0.39 -4.59 16 13 C 0.17 3.92 6.65 -38.97 -0.26 3.66 16 14 O -0.17 -4.59 9.75 0.34 0.00 -4.59 16 15 C -0.39 -10.50 9.48 30.87 0.29 -10.20 16 16 H 0.10 2.34 5.19 -52.49 -0.27 2.07 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 18 N -0.86 -24.25 13.67 55.48 0.76 -23.50 16 19 Si 0.94 19.67 29.55 -169.99 -5.02 14.65 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 C -0.24 -4.95 9.15 -39.46 -0.36 -5.31 16 24 C -0.04 -0.67 9.35 -39.18 -0.37 -1.03 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.08 0.88 6.73 -51.93 -0.35 0.53 16 27 H 0.07 0.85 6.07 -51.93 -0.32 0.53 16 28 H 0.05 0.52 7.55 -51.93 -0.39 0.12 16 29 H 0.07 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.95 8.13 -51.93 -0.42 0.53 16 36 H 0.12 2.12 7.55 -52.49 -0.40 1.72 16 37 H 0.12 2.41 8.06 -52.49 -0.42 1.98 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 39 H 0.13 2.65 5.62 -52.48 -0.30 2.35 16 40 H 0.11 1.61 6.46 -52.49 -0.34 1.27 16 LS Contribution 332.16 15.07 5.01 5.01 Total: -1.00 -30.16 332.16 -6.84 -37.00 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -5.30 Total: 4.37 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.95 Total: -16.11 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.81 Total: -35.56 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.38 Total: -9.35 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.16 -6.84 -37.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916616632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.380 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.003 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds