Wall clock time and date at job start Tue Mar 31 2020 06:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.29808 * 120.00080 * 2 1 4 4 N 1.40095 * 119.99896 * 4.24198 * 3 2 1 5 5 C 1.47155 * 120.97982 * 293.72866 * 4 3 2 6 6 C 1.53295 * 108.38555 * 230.51210 * 5 4 3 7 7 O 1.42959 * 109.22687 * 307.70488 * 6 5 4 8 8 C 1.42959 * 114.16584 * 62.57531 * 7 6 5 9 9 C 1.47149 * 120.98537 * 113.70991 * 4 3 2 10 10 C 1.47395 * 120.00062 * 180.02562 * 2 1 3 11 11 C 1.39788 * 120.08767 * 179.72467 * 10 2 1 12 12 C 1.37736 * 119.91369 * 179.81294 * 11 10 2 13 13 C 1.39071 * 120.08322 * 0.44022 * 12 11 10 14 14 O 1.35669 * 119.90931 * 179.76540 * 13 12 11 15 15 C 1.34814 * 116.99570 * 174.13317 * 14 13 12 16 16 H 1.07998 * 120.00163 * 5.09581 * 15 14 13 17 17 C 1.38622 * 119.99829 * 185.09056 * 15 14 13 18 18 N 1.31577 * 119.99872 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00068 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.46717 * 0.02562 * 19 17 15 21 21 H 1.48493 * 109.47055 * 120.00197 * 19 17 15 22 22 H 1.48494 * 109.47088 * 240.00260 * 19 17 15 23 23 C 1.39062 * 120.17459 * 359.78995 * 13 12 11 24 24 C 1.37739 * 120.09009 * 0.02562 * 23 13 12 25 25 H 1.09001 * 109.47039 * 94.84232 * 1 2 3 26 26 H 1.09001 * 109.47076 * 214.83793 * 1 2 3 27 27 H 1.08997 * 109.46941 * 334.84116 * 1 2 3 28 28 H 1.09001 * 109.67751 * 110.79048 * 5 4 3 29 29 H 1.09002 * 109.68317 * 350.24355 * 5 4 3 30 30 H 1.08997 * 109.51174 * 187.77323 * 6 5 4 31 31 H 1.09004 * 109.55211 * 67.65547 * 6 5 4 32 32 H 1.08996 * 109.51311 * 57.34956 * 8 7 6 33 33 H 1.09007 * 109.50850 * 177.49949 * 8 7 6 34 34 H 1.08991 * 109.68296 * 249.21110 * 9 4 3 35 35 H 1.09004 * 109.68068 * 9.76098 * 9 4 3 36 36 H 1.08001 * 120.04468 * 359.97438 * 11 10 2 37 37 H 1.07995 * 119.96057 * 180.20898 * 12 11 10 38 38 H 0.97001 * 120.00203 * 179.97438 * 18 17 15 39 39 H 1.08007 * 119.95703 * 179.97438 * 23 13 12 40 40 H 1.07994 * 120.04505 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1561 1.1242 0.0000 4 7 1.4585 2.3358 0.0897 5 6 0.5682 2.7794 -0.9948 6 6 0.9343 4.2221 -1.3612 7 8 0.9391 5.0221 -0.1764 8 6 1.9102 4.6243 0.7944 9 6 1.5939 3.2022 1.2714 10 6 2.2440 -1.2765 -0.0006 11 6 3.6419 -1.2786 -0.0064 12 6 4.3269 -2.4735 -0.0030 13 6 3.6297 -3.6768 -0.0031 14 8 4.3081 -4.8517 -0.0045 15 6 3.5794 -5.9793 0.1183 16 1 2.5007 -5.9266 0.1292 17 6 4.2146 -7.2062 0.2304 18 7 5.5287 -7.2703 0.2175 19 14 3.2049 -8.7687 0.3999 20 1 1.7596 -8.4279 0.3867 21 1 3.5086 -9.6795 -0.7329 22 1 3.5438 -9.4407 1.6800 23 6 2.2391 -3.6789 -0.0021 24 6 1.5467 -2.4881 -0.0017 25 1 -0.3633 -0.0867 -1.0240 26 1 -0.3633 -0.8435 0.5871 27 1 -0.3633 0.9302 0.4369 28 1 -0.4680 2.7375 -0.6593 29 1 0.6994 2.1351 -1.8642 30 1 0.2005 4.6166 -2.0640 31 1 1.9237 4.2426 -1.8183 32 1 2.9033 4.6455 0.3458 33 1 1.8783 5.3083 1.6426 34 1 0.6610 3.2029 1.8350 35 1 2.4045 2.8379 1.9027 36 1 4.1840 -0.3445 -0.0109 37 1 5.4069 -2.4760 -0.0041 38 1 5.9733 -8.1288 0.2963 39 1 1.7012 -4.6154 -0.0026 40 1 0.4668 -2.4906 -0.0014 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000916616632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:28 Heat of formation + Delta-G solvation = -8.192663 kcal Electronic energy + Delta-G solvation = -22203.326887 eV Core-core repulsion = 18791.701233 eV Total energy + Delta-G solvation = -3411.625654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86459 -40.17423 -38.82465 -37.23523 -34.51902 -33.95302 -32.32668 -32.06066 -30.54375 -29.44371 -27.38336 -26.76959 -25.01442 -23.72396 -23.43434 -21.82832 -20.18488 -19.72799 -18.86339 -17.44713 -17.20000 -16.69430 -16.37722 -16.23530 -16.16344 -15.99718 -15.65480 -15.58446 -15.38235 -14.79914 -14.47705 -14.45357 -14.25575 -13.55324 -13.42398 -13.15733 -13.05859 -12.79087 -12.62850 -12.61004 -12.46022 -12.29147 -12.07613 -11.98947 -11.47474 -11.23259 -11.08479 -10.71401 -10.53195 -9.85901 -9.01248 -8.49444 -8.37357 -6.16656 0.07341 0.59867 1.37680 1.40338 1.56011 1.59430 1.85803 2.17284 2.86443 2.91422 3.18469 3.44694 3.64463 3.86188 3.89920 4.10088 4.15696 4.17271 4.23410 4.29268 4.36589 4.45388 4.51240 4.57127 4.65972 4.67090 4.70680 4.78750 4.85963 4.96081 4.98406 5.08237 5.12732 5.26183 5.39988 5.62741 5.64865 5.83145 6.00259 6.10606 6.14773 6.28471 6.95166 7.57089 7.72845 8.73443 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044777 B = 0.002725 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.177286 B =10271.000741 C =10609.936740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 N -0.290 5.290 4 N -0.591 5.591 5 C 0.100 3.900 6 C 0.052 3.948 7 O -0.397 6.397 8 C 0.052 3.948 9 C 0.124 3.876 10 C -0.146 4.146 11 C -0.026 4.026 12 C -0.211 4.211 13 C 0.134 3.866 14 O -0.224 6.224 15 C -0.413 4.413 16 H 0.109 0.891 17 C -0.022 4.022 18 N -0.918 5.918 19 Si 1.020 2.980 20 H -0.247 1.247 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.244 4.244 24 C -0.029 4.029 25 H 0.090 0.910 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.123 0.877 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.274 0.726 39 H 0.131 0.869 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.284 18.517 -0.255 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.011 4.011 3 N -0.093 5.093 4 N -0.413 5.413 5 C -0.024 4.024 6 C -0.025 4.025 7 O -0.316 6.316 8 C -0.026 4.026 9 C 0.000 4.000 10 C -0.149 4.149 11 C -0.045 4.045 12 C -0.230 4.230 13 C 0.082 3.918 14 O -0.129 6.129 15 C -0.489 4.489 16 H 0.127 0.873 17 C -0.220 4.220 18 N -0.556 5.556 19 Si 0.839 3.161 20 H -0.170 1.170 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.263 4.263 24 C -0.049 4.049 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.139 0.861 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.155 0.845 37 H 0.133 0.867 38 H 0.083 0.917 39 H 0.149 0.851 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.167 19.030 -0.263 22.589 hybrid contribution -0.362 -1.450 -0.089 1.497 sum -12.529 17.580 -0.352 21.591 Atomic orbital electron populations 1.21462 0.90844 1.04232 1.04052 1.24053 0.94694 0.91961 0.90407 1.75538 1.24211 0.91766 1.17774 1.49879 1.54911 1.15674 1.20800 1.22231 0.93393 0.96033 0.90780 1.23028 1.02103 0.90127 0.87291 1.87892 1.58782 1.55881 1.29015 1.23076 0.91446 0.95233 0.92813 1.21899 1.01378 0.89719 0.86982 1.18163 0.92494 0.90834 1.13420 1.21016 0.93673 0.96281 0.93579 1.20349 0.99881 0.90257 1.12539 1.20067 0.92253 0.87018 0.92476 1.83932 1.36834 1.12321 1.79769 1.21959 0.92182 0.82465 1.52312 0.87332 1.26641 0.97379 1.02314 0.95657 1.70201 1.09847 1.27413 1.48107 0.84501 0.78220 0.74941 0.78404 1.16980 1.19501 1.19520 1.21206 0.92995 0.99828 1.12279 1.21219 1.00403 0.89688 0.93570 0.89167 0.89337 0.90715 0.92159 0.90836 0.86130 0.93474 0.93207 0.85942 0.92445 0.90255 0.84524 0.86659 0.91725 0.85127 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 8.39 71.24 0.60 -2.35 16 2 C 0.18 4.83 7.01 45.27 0.32 5.15 16 3 N -0.29 -8.32 10.40 -42.86 -0.45 -8.77 16 4 N -0.59 -13.91 2.79 -511.62 -1.43 -15.34 16 5 C 0.10 1.91 5.35 86.35 0.46 2.37 16 6 C 0.05 0.89 6.98 72.08 0.50 1.40 16 7 O -0.40 -7.81 10.74 -148.98 -1.60 -9.41 16 8 C 0.05 0.89 6.98 72.08 0.50 1.39 16 9 C 0.12 2.45 7.01 86.35 0.60 3.06 16 10 C -0.15 -4.74 5.87 -20.11 -0.12 -4.85 16 11 C -0.03 -0.92 9.57 22.53 0.22 -0.71 16 12 C -0.21 -9.02 9.97 22.35 0.22 -8.79 16 13 C 0.13 6.47 6.65 22.67 0.15 6.62 16 14 O -0.22 -13.05 9.75 -21.68 -0.21 -13.26 16 15 C -0.41 -23.12 9.48 67.91 0.64 -22.47 16 16 H 0.11 5.46 5.19 -2.91 -0.02 5.44 16 17 C -0.02 -1.20 5.49 84.82 0.47 -0.74 16 18 N -0.92 -55.16 13.67 21.61 0.30 -54.87 16 19 Si 1.02 41.23 29.55 68.60 2.03 43.26 16 20 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 21 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 22 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 23 C -0.24 -9.93 9.15 22.35 0.20 -9.72 16 24 C -0.03 -0.93 9.35 22.53 0.21 -0.72 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.09 1.58 6.73 -2.39 -0.02 1.56 16 27 H 0.07 1.47 6.07 -2.39 -0.01 1.46 16 28 H 0.06 1.03 7.55 -2.39 -0.02 1.02 16 29 H 0.07 1.42 8.13 -2.39 -0.02 1.40 16 30 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.63 8.13 -2.39 -0.02 1.61 16 36 H 0.14 4.54 7.55 -2.91 -0.02 4.52 16 37 H 0.12 4.91 8.06 -2.91 -0.02 4.88 16 38 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 39 H 0.13 5.26 5.62 -2.91 -0.02 5.25 16 40 H 0.16 3.69 6.46 -2.91 -0.02 3.67 16 Total: -1.00 -69.21 332.16 4.67 -64.54 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 1.05 Total: 24.22 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 4.99 Total: -30.37 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -1.58 Total: -78.98 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -1.81 Total: -22.67 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -69.21 4.67 -64.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000916616632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.349 kcal (2) G-P(sol) polarization free energy of solvation -69.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds